Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p58230 Brassica napus HOM05D003690 ORTHO05D028013 7.0e-108 394.0 210 100.0
BolC9t58687H Brassica oleracea HOM05D003690 ORTHO05D028013 1.9e-97 359.4 210 93.3
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 2.1e-75 286.2 156 94.2
BolC3t16532H Brassica oleracea HOM05D003690 ORTHO05D004920 1.4e-28 130.6 95 76.8
BraA03t12684Z Brassica rapa HOM05D003690 ORTHO05D004920 3.2e-28 129.4 98 74.5
C03p42620 Brassica napus HOM05D003690 ORTHO05D004920 7.1e-28 128.3 95 75.8
A03p35040 Brassica napus HOM05D003690 ORTHO05D004920 9.3e-28 127.9 98 73.5
Thhalv10020356m.g Eutrema salsugineum HOM05D003690 ORTHO05D004920 1.2e-27 127.5 87 82.8
Sp3g05990 Schrenkiella parvula HOM05D003690 ORTHO05D004920 1.2e-27 127.5 87 82.8
BcaB04g21307 Brassica carinata HOM05D003690 ORTHO05D004920 2.1e-27 126.7 87 81.6
Thhalv10002456m.g Eutrema salsugineum HOM05D003690 ORTHO05D004920 2.7e-27 126.3 87 81.6
AL3G18270 Arabidopsis lyrata HOM05D003690 ORTHO05D004920 1.8e-26 123.6 87 80.5
AT3G07050 Arabidopsis thaliana HOM05D003690 ORTHO05D004920 3.9e-26 122.5 98 71.4
BraA01t04401Z Brassica rapa HOM05D003690 ORTHO05D004920 1.5e-25 120.6 87 79.3
Solyc09g061430.3 Solanum lycopersicum HOM05D003690 ORTHO05D004920 1.9e-25 120.2 116 58.6
Sopen09g024250 Solanum pennellii HOM05D003690 ORTHO05D004920 1.9e-25 120.2 116 58.6
PGSC0003DMG400028012 Solanum tuberosum HOM05D003690 ORTHO05D004920 3.3e-25 119.4 92 70.7
BolC1t05572H Brassica oleracea HOM05D003690 ORTHO05D004920 4.3e-25 119.0 87 78.2
BcaC09g47936 Brassica carinata HOM05D003690 ORTHO05D004920 5.7e-25 118.6 99 69.7
CARHR081630 Cardamine hirsuta HOM05D003690 ORTHO05D004920 7.4e-25 118.2 92 72.8
vmacro14761 Vaccinium macrocarpon HOM05D003690 ORTHO05D004920 7.4e-25 118.2 87 75.9
Aa31LG5G17610 Aethionema arabicum HOM05D003690 ORTHO05D004920 9.7e-25 117.9 87 75.9
Lsat_1_v5_gn_5_179901 Lactuca sativa HOM05D003690 ORTHO05D004920 9.7e-25 117.9 87 74.7
PGSC0003DMG400020159 Solanum tuberosum HOM05D003690 ORTHO05D004920 1.3e-24 117.5 92 70.7
CANSAT01G2208 Cannabis sativa HOM05D003690 ORTHO05D004920 1.6e-24 117.1 87 73.6
Gohir.A07G156300 Gossypium hirsutum HOM05D003690 ORTHO05D004920 1.6e-24 117.1 87 77.0
Nitab4.5_0000866g0120 Nicotiana tabacum HOM05D003690 ORTHO05D004920 2.2e-24 116.7 103 63.1
CSS0014117 Camellia sinensis var. sinensis HOM05D003690 ORTHO05D004920 2.8e-24 116.3 87 73.6
CSS0044814 Camellia sinensis var. sinensis HOM05D003690 ORTHO05D004920 2.8e-24 116.3 87 73.6
Duzib133G1322 Durio zibethinus HOM05D003690 ORTHO05D004920 2.8e-24 116.3 92 71.7
Duzib138G1284 Durio zibethinus HOM05D003690 ORTHO05D004920 2.8e-24 116.3 92 71.7
Gohir.D07G162600 Gossypium hirsutum HOM05D003690 ORTHO05D004920 2.8e-24 116.3 87 75.9
Gorai.001G186200 Gossypium raimondii HOM05D003690 ORTHO05D004920 2.8e-24 116.3 87 75.9
Nitab4.5_0003790g0010 Nicotiana tabacum HOM05D003690 ORTHO05D004920 2.8e-24 116.3 92 69.6
Rhsim01G0256500 Rhododendron simsii HOM05D003690 ORTHO05D004920 2.8e-24 116.3 92 68.5
COL.COLO4_09004 Corchorus olitorius HOM05D003690 ORTHO05D004920 3.7e-24 115.9 87 75.9
Peaxi162Scf00107g01320 Petunia axillaris HOM05D003690 ORTHO05D004920 3.7e-24 115.9 109 60.6
Sopen06g034900 Solanum pennellii HOM05D003690 ORTHO05D004920 3.7e-24 115.9 92 69.6
THA.LOC104820116 Tarenaya hassleriana HOM05D003690 ORTHO05D004920 3.7e-24 115.9 95 69.5
Thecc.01G227500 Theobroma cacao HOM05D003690 ORTHO05D004920 6.3e-24 115.2 92 70.7
DCAR_012635 Daucus carota HOM05D003690 ORTHO05D004920 1.4e-23 114.0 87 73.6
CiPaw.04G105900 Carya illinoinensis HOM05D003690 ORTHO05D004920 1.8e-23 113.6 92 69.6
CAN.G771.63 Capsicum annuum HOM05D003690 ORTHO05D004920 3.1e-23 112.8 86 72.1
MELO3C015809.2 Cucumis melo HOM05D003690 ORTHO05D004920 3.1e-23 112.8 111 61.3
CsaV3_3G006620 Cucumis sativus L. HOM05D003690 ORTHO05D004920 3.1e-23 112.8 107 59.8
Sabra02G0183700 Salix brachista HOM05D003690 ORTHO05D004920 3.1e-23 112.8 92 67.4
ClCG10G007380 Citrullus lanatus HOM05D003690 ORTHO05D004920 4.1e-23 112.5 102 62.7
CsaV3_7G027900 Cucumis sativus L. HOM05D003690 ORTHO05D004920 4.1e-23 112.5 111 61.3
Sed0007747 Sechium edule HOM05D003690 ORTHO05D004920 5.3e-23 112.1 111 60.4
ClCG09G007250 Citrullus lanatus HOM05D003690 ORTHO05D004920 6.9e-23 111.7 119 58.8
Gohir.A11G136700 Gossypium hirsutum HOM05D003690 ORTHO05D004920 6.9e-23 111.7 87 73.6
Gohir.D11G143000 Gossypium hirsutum HOM05D003690 ORTHO05D004920 6.9e-23 111.7 87 73.6
Gorai.007G153300 Gossypium raimondii HOM05D003690 ORTHO05D004920 6.9e-23 111.7 87 73.6
Sed0008284 Sechium edule HOM05D003690 ORTHO05D004920 6.9e-23 111.7 102 61.8
Sc09g0009180 Simmondsia chinensis HOM05D003690 ORTHO05D004920 6.9e-23 111.7 100 62.0
Dinv04660 Davidia involucrata HOM05D003690 ORTHO05D004920 9.0e-23 111.3 115 58.3
Actinidia09489 Actinidia chinensis HOM05D003690 ORTHO05D004920 1.2e-22 110.9 89 69.7
ECA248G3114 Erigeron canadensis HOM05D003690 ORTHO05D004920 1.2e-22 110.9 87 71.3
THA.LOC104802677 Tarenaya hassleriana HOM05D003690 ORTHO05D004920 1.2e-22 110.9 98 64.3
Cc01_g17200 Coffea canephora HOM05D003690 ORTHO05D004920 1.5e-22 110.5 92 67.4
Nitab4.5_0002085g0010 Nicotiana tabacum HOM05D003690 ORTHO05D004920 1.5e-22 110.5 92 66.3
ATR0315G112 Amborella trichopoda HOM05D003690 ORTHO05D004920 2.0e-22 110.2 93 63.4
Hund18351 Selenicereus undatus HOM05D003690 ORTHO05D004920 2.0e-22 110.2 114 55.3
BcaC05g29835 Brassica carinata HOM05D003690 ORTHO05D004920 2.6e-22 109.8 87 72.4
C05p60340 Brassica napus HOM05D003690 ORTHO05D004920 2.6e-22 109.8 87 72.4
BolC5t34681H Brassica oleracea HOM05D003690 ORTHO05D004920 2.6e-22 109.8 87 72.4
BraA05t22841Z Brassica rapa HOM05D003690 ORTHO05D004920 3.4e-22 109.4 87 72.4
Eucgr.K03607 Eucalyptus grandis HOM05D003690 ORTHO05D004920 3.4e-22 109.4 87 71.3
Sc01g0007050 Simmondsia chinensis HOM05D003690 ORTHO05D004920 3.4e-22 109.4 100 60.0
Solyc06g083520.3 Solanum lycopersicum HOM05D003690 ORTHO05D004920 3.4e-22 109.4 92 68.5
arahy.Tifrunner.gnm1.ann1.27DWCJ Arachis hypogaea HOM05D003690 ORTHO05D004920 4.5e-22 109.0 92 65.2
Lj2C1133T2 Lonicera japonica HOM05D003690 ORTHO05D004920 4.5e-22 109.0 119 57.1
Nn3g19439 Nelumbo nucifera HOM05D003690 ORTHO05D004920 4.5e-22 109.0 117 54.7
Potri.002G241100 Populus trichocarpa HOM05D003690 ORTHO05D004920 4.5e-22 109.0 125 52.8
Hund18349 Selenicereus undatus HOM05D003690 ORTHO05D004920 4.5e-22 109.0 92 64.1
Aqoxy5G01520 Aquilegia oxysepala HOM05D003690 ORTHO05D004920 5.9e-22 108.6 92 63.0
A05p41150 Brassica napus HOM05D003690 ORTHO05D004920 5.9e-22 108.6 110 60.0
SGA_v2.0_scaffold1G00720 Striga asiatica HOM05D003690 ORTHO05D004920 5.9e-22 108.6 102 58.8
arahy.Tifrunner.gnm1.ann1.0Y3V4L Arachis hypogaea HOM05D003690 ORTHO05D004920 7.7e-22 108.2 92 65.2
QL07p005142 Quercus lobata HOM05D003690 ORTHO05D004920 1.0e-21 107.8 120 54.2
RcHm_v2.0_Chr6g0285031 Rosa chinensis HOM05D003690 ORTHO05D004920 1.0e-21 107.8 87 72.4
Atru.chr3.3177 Acer truncatum HOM05D003690 ORTHO05D004920 1.3e-21 107.5 100 61.0
CDE11G0127 Ceratophyllum demersum HOM05D003690 ORTHO05D004920 1.7e-21 107.1 92 64.1
Ciclev10019400m.g Citrus clementina HOM05D003690 ORTHO05D004920 2.9e-21 106.3 92 64.1
FvH4_3g29200 Fragaria vesca HOM05D003690 ORTHO05D004920 2.9e-21 106.3 87 71.3
FAN16G3655 Fragaria x ananassa HOM05D003690 ORTHO05D004920 2.9e-21 106.3 87 71.3
FAN21G1197 Fragaria x ananassa HOM05D003690 ORTHO05D004920 2.9e-21 106.3 87 71.3
Prupe.8G204300 Prunus persica HOM05D003690 ORTHO05D004920 2.9e-21 106.3 100 63.0
GSVIVG01028584001 Vitis vinifera HOM05D003690 ORTHO05D004920 2.9e-21 106.3 92 65.2
EL10Ac7g17783 Beta vulgaris HOM05D003690 ORTHO05D004920 3.8e-21 105.9 107 59.8
Manes.13G044800 Manihot esculenta HOM05D003690 ORTHO05D004920 3.8e-21 105.9 114 52.6
QL12p004452 Quercus lobata HOM05D003690 ORTHO05D004920 5.0e-21 105.5 87 67.8
SalBow2G1746 Salvia bowleyana HOM05D003690 ORTHO05D004920 5.0e-21 105.5 99 59.6
BcaC05g29759 Brassica carinata HOM05D003690 ORTHO05D004920 6.5e-21 105.1 82 74.4
Lalb_Chr03g0036581 Lupinus albus HOM05D003690 ORTHO05D004920 8.5e-21 104.8 87 70.1
Phvul.007G235000 Phaseolus vulgaris HOM05D003690 ORTHO05D004920 8.5e-21 104.8 92 63.0
unitig_8.g3755 Utricularia gibba HOM05D003690 ORTHO05D004920 8.5e-21 104.8 87 65.5
FAN25G2487 Fragaria x ananassa HOM05D003690 ORTHO05D004920 2.5e-20 103.2 87 69.0
Nn3g19937 Nelumbo nucifera HOM05D003690 ORTHO05D004920 2.5e-20 103.2 92 63.0
Ah.08g213950 Amaranthus hybridus HOM05D003690 ORTHO05D004920 3.2e-20 102.8 114 53.5
Oeu020378.1 Olea europaea HOM05D003690 ORTHO05D004920 4.2e-20 102.4 87 65.5
Dinv19210 Davidia involucrata HOM05D003690 ORTHO05D004920 5.5e-20 102.1 92 64.1
FAN11G3512 Fragaria x ananassa HOM05D003690 ORTHO05D004920 7.2e-20 101.7 82 72.0
Haze_24784 Corylus avellana HOM05D003690 ORTHO05D004920 9.4e-20 101.3 87 63.2
TPR.G19744 Trifolium pratense HOM05D003690 ORTHO05D004920 1.2e-19 100.9 92 60.9
MSTRG.18384 Avicennia marina HOM05D003690 ORTHO05D004920 1.6e-19 100.5 92 59.8
Zm00001eb049610 Zea mays HOM05D003690 ORTHO05D004920 1.6e-19 100.5 88 64.8
PGR044G2123 Punica granatum HOM05D003690 ORTHO05D004920 2.1e-19 100.1 92 59.8
SEGI_02950 Sequoiadendron giganteum HOM05D003690 ORTHO05D004920 2.7e-19 99.8 87 62.1
Cpa.g.sc8.169 Carica papaya HOM05D003690 ORTHO05D004920 1.0e-18 97.8 92 60.9
TWI18G0354 Tripterygium wilfordii HOM05D003690 ORTHO05D004920 8.8e-18 94.7 92 60.9
Os01g0375000 Oryza sativa ssp. japonica HOM05D003690 ORTHO05D004920 2.0e-17 93.6 92 56.5
HanXRQChr10g0287311 Helianthus annuus HOM05D003690 ORTHO05D004920 2.5e-17 93.2 87 57.5
Lj6g0012707 Lotus japonicus HOM05D003690 ORTHO05D004920 3.3e-17 92.8 100 54.0
Pp3c12_9000 Physcomitrium patens HOM05D003690 ORTHO05D004920 5.7e-17 92.0 98 56.1
VMungo0720G3088 Vigna mungo HOM05D003690 ORTHO05D004920 7.4e-17 91.7 92 57.6
Lj5g0003167 Lotus japonicus HOM05D003690 ORTHO05D004920 9.7e-17 91.3 92 57.6
TAR362G0926 Trochodendron aralioides HOM05D003690 ORTHO05D004920 1.3e-16 90.9 116 46.6
AagrBONN_evm.TU.Sc2ySwM_344.4000 Anthoceros agrestis HOM05D003690 ORTHO05D004920 2.2e-16 90.1 87 56.3
AUR62031840 Chenopodium quinoa HOM05D003690 ORTHO05D004920 2.8e-16 89.7 92 54.3
AUR62008870 Chenopodium quinoa HOM05D003690 ORTHO05D004920 3.7e-16 89.4 92 54.3
Zm00001eb219390 Zea mays HOM05D003690 ORTHO05D004920 3.7e-16 89.4 99 55.6
SGA_v2.0_scaffold8G04649 Striga asiatica HOM05D003690 ORTHO05D004920 6.3e-16 88.6 102 52.0
Glyma.10G122200 Glycine max HOM05D003690 ORTHO05D004920 8.2e-16 88.2 116 45.7
HanXRQChr01g0014631 Helianthus annuus HOM05D003690 ORTHO05D004920 1.1e-15 87.8 87 59.8
SHI08009 Sapria himalayana HOM05D003690 ORTHO05D004920 1.1e-15 87.8 80 58.8
Glyma.20G073900 Glycine max HOM05D003690 ORTHO05D004920 1.8e-15 87.0 112 47.3
Nitab4.5_0004922g0050 Nicotiana tabacum HOM05D003690 ORTHO05D004920 3.1e-15 86.3 81 56.8
Mapoly0030s0053 Marchantia polymorpha HOM05D003690 ORTHO05D004920 5.3e-15 85.5 99 49.5
TWI36G0757 Tripterygium wilfordii HOM05D003690 ORTHO05D004920 6.9e-15 85.1 92 55.4
Migut.N02264 Erythranthe guttata HOM05D003690 ORTHO05D004920 9.1e-15 84.7 95 53.7
MD05G1177400 Malus domestica HOM05D003690 ORTHO05D004920 9.1e-15 84.7 76 63.2
MD10G1165800 Malus domestica HOM05D003690 ORTHO05D004920 1.2e-14 84.3 71 67.6
TPR.G21886 Trifolium pratense HOM05D003690 ORTHO05D028013 3.4e-14 82.8 87 54.0
Ca_13246_v3 Cicer arietinum L. HOM05D003690 ORTHO05D004920 1.0e-13 81.3 73 58.9
Psat4g007640 Pisum sativum HOM05D003690 ORTHO05D004920 1.7e-13 80.5 87 52.9
HPP92_023533 Vanilla planifolia HOM05D003690 ORTHO05D004920 1.1e-12 77.8 100 47.0
Medtr1g048030 Medicago truncatula HOM05D003690 ORTHO05D004920 1.9e-12 77.0 87 54.0
Medtr7g056733 Medicago truncatula HOM05D003690 ORTHO05D028013 2.5e-12 76.6 82 54.9
Migut.D00526 Erythranthe guttata HOM05D003690 ORTHO05D004920 6.1e-11 72.0 84 51.2
PSO210G6754 Papaver somniferum HOM05D003690 ORTHO05D004920 7.9e-11 71.6 71 59.2
PSO170G2973 Papaver somniferum HOM05D003690 ORTHO05D004920 1.8e-10 70.5 71 59.2
BcaC01g00704 Brassica carinata HOM05D004923 ORTHO05D032366 2.6e-09 66.6 69 60.9
BolC3t20618H Brassica oleracea HOM05D004923 ORTHO05D032366 2.6e-09 66.6 69 60.9
ECA236G1159 Erigeron canadensis HOM05D003690 ORTHO05D004920 4.4e-09 65.9 87 47.1
BcaC01g00705 Brassica carinata HOM05D001612 ORTHO05D019994 4.8e-08 62.4 122 41.8
SMO147G0351 Selaginella moellendorffii HOM05D003690 ORTHO05D004920 4.8e-08 62.4 50 64.0
Cre12.g533050 Chlamydomonas reinhardtii HOM05D003690 ORTHO05D004920 7.0e-07 58.5 85 40.0
SalBow7G4783 Salvia bowleyana HOM05D003690 ORTHO05D004920 7.0e-07 58.5 102 39.2
DCAR_000534 Daucus carota HOM05D003690 ORTHO05D004920 1.5e-06 57.4 97 43.3
DCAR_010523 Daucus carota HOM05D000103 ORTHO05D003225 1.5e-06 57.4 81 44.4
BcaB02g10025 Brassica carinata HOM05D004950 ORTHO05D032427 3.5e-06 56.2 87 42.5
Pp3c16_1080 Physcomitrium patens HOM05D003690 ORTHO05D004920 3.5e-06 56.2 89 38.2
MCO01G731 Micromonas commoda HOM05D003690 ORTHO05D004920 5.9e-06 55.5 89 39.3


User provided reference genes

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