Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 1.0e-216 756.5 407 100.0
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 1.0e-200 703.4 411 94.4
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 3.8e-195 684.9 380 97.9
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 1.5e-194 682.9 411 91.5
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 8.3e-182 640.6 411 88.3
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 3.4e-167 592.0 398 82.7
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 3.2e-165 585.5 307 96.4
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 1.2e-161 573.5 399 82.0
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 6.4e-158 561.2 381 84.0
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 3.9e-155 552.0 398 78.6
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 1.2e-151 540.4 312 87.5
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 4.9e-150 535.0 310 86.8
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 1.1e-136 490.7 313 79.2
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 2.1e-132 476.5 301 77.4
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 1.3e-131 473.8 314 74.2
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 2.3e-131 473.0 314 73.9
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 8.7e-131 471.1 307 76.2
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 1.9e-130 469.9 315 73.3
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 5.6e-130 468.4 312 74.7
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 1.3e-129 467.2 317 73.2
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 3.7e-129 465.7 314 73.9
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 6.2e-129 464.9 313 73.5
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 8.2e-129 464.5 311 75.2
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 1.1e-128 464.2 314 72.6
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 3.1e-128 462.6 306 75.2
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 6.9e-128 461.5 308 74.0
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 2.0e-127 459.9 382 65.4
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 2.0e-127 459.9 311 74.0
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 2.6e-127 459.5 311 73.3
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 3.4e-127 459.1 323 72.1
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 5.8e-127 458.4 301 75.1
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 1.3e-126 457.2 309 72.5
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 2.2e-126 456.4 316 72.2
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 4.9e-126 455.3 302 75.5
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 1.9e-125 453.4 304 74.0
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 4.2e-125 452.2 302 74.2
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 9.3e-125 451.1 311 72.3
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 1.2e-124 450.7 307 72.6
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 1.2e-124 450.7 311 72.3
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 1.2e-124 450.7 303 74.6
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 2.1e-124 449.9 312 70.8
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 2.7e-124 449.5 304 74.0
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 2.7e-124 449.5 315 71.4
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 6.0e-124 448.4 301 74.1
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 1.0e-123 447.6 306 70.6
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 2.3e-123 446.4 307 71.3
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 2.3e-123 446.4 304 72.4
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 6.7e-123 444.9 307 71.3
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 8.7e-123 444.5 302 72.8
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 7.4e-122 441.4 299 72.9
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 1.3e-121 440.7 379 63.1
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 1.6e-121 440.3 378 62.2
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 2.8e-121 439.5 314 69.1
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 4.8e-121 438.7 292 75.3
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 6.3e-121 438.3 305 71.8
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 1.4e-120 437.2 311 67.8
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 5.3e-120 435.3 302 72.8
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 5.3e-120 435.3 306 71.9
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 6.9e-120 434.9 313 67.7
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 1.5e-119 433.7 309 70.2
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 1.5e-119 433.7 386 58.3
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 2.0e-119 433.3 302 72.2
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 3.4e-119 432.6 386 58.0
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 5.9e-119 431.8 307 69.4
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 5.9e-119 431.8 306 69.6
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 1.7e-118 430.3 304 72.0
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 1.7e-118 430.3 303 71.0
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 3.8e-118 429.1 305 70.2
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 3.8e-118 429.1 310 69.0
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 1.1e-117 427.6 317 69.4
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 1.9e-117 426.8 314 69.4
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 7.2e-117 424.9 298 72.5
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 1.0e-115 421.0 305 71.1
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 1.4e-115 420.6 302 66.9
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 3.9e-115 419.1 304 67.8
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 3.9e-115 419.1 347 60.8
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 5.1e-115 418.7 305 70.5
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 5.1e-115 418.7 308 69.5
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 6.7e-115 418.3 279 71.7
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 1.5e-114 417.2 306 69.3
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 4.3e-114 415.6 309 67.3
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 1.1e-112 411.0 301 68.8
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 5.3e-112 408.7 307 66.4
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 2.0e-111 406.8 311 64.6
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 1.3e-110 404.1 287 69.7
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 4.2e-109 399.1 250 75.6
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 1.6e-108 397.1 298 68.8
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 4.7e-108 395.6 312 63.5
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 7.0e-104 381.7 264 71.6
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 7.7e-103 378.3 291 64.9
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 1.8e-99 367.1 263 66.5
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 5.2e-99 365.5 306 60.5
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 8.8e-99 364.8 289 65.1
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 2.2e-97 360.1 245 73.9
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 6.3e-97 358.6 238 75.6
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 2.0e-90 337.0 304 57.2
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 2.2e-89 333.6 269 63.2
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 2.2e-89 333.6 300 58.3
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 1.4e-88 330.9 304 56.6
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 5.0e-86 322.4 302 53.3
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 5.5e-85 318.9 310 58.4
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 3.5e-79 299.7 306 56.9
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 1.1e-77 294.7 307 56.7
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 3.0e-75 286.6 323 48.6
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 4.5e-71 272.7 279 52.0
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 6.6e-70 268.9 207 66.7
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 1.1e-61 241.5 238 55.0
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 3.3e-61 240.0 166 74.1
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 5.6e-61 239.2 239 54.4
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 7.1e-56 222.2 167 70.1
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 2.6e-50 203.8 368 37.2
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 3.4e-50 203.4 145 71.0
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 8.3e-49 198.7 340 35.0
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 2.1e-47 194.1 196 55.6
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 7.3e-45 185.7 199 53.8
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 3.8e-41 173.3 120 73.3
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 1.3e-38 164.9 181 50.8
QL06p003531 Quercus lobata HOM05D006587 ORTHO05D008487 1.8e-27 127.9 79 75.9
Lalb_Chr02g0144651 Lupinus albus HOM05D006587 ORTHO05D008487 3.3e-13 80.5 61 60.7
Lsat_1_v5_gn_9_31900 Lactuca sativa HOM05D006587 ORTHO05D011576 2.8e-12 77.4 71 50.7
Gorai.012G092500 Gossypium raimondii HOM05D006587 ORTHO05D008487 9.0e-11 72.4 49 73.5
SEGI_15408 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 1.2e-10 72.0 76 47.4
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 4.5e-10 70.1 73 47.9
Gorai.004G106600 Gossypium raimondii HOM05D006587 ORTHO05D008487 5.8e-10 69.7 49 73.5
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 1.3e-09 68.6 60 61.7
arahy.Tifrunner.gnm1.ann1.Y836FI Arachis hypogaea HOM05D000158 ORTHO05D000197 1.4e-08 65.1 36 80.6
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 9.3e-08 62.4 91 39.6
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 1.2e-07 62.0 46 71.7


User provided reference genes

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