Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 1.6e-61 239.2 119 100.0
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 2.2e-58 228.8 119 95.8
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 2.1e-56 222.2 111 98.2
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 2.1e-56 222.2 111 98.2
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 2.1e-56 222.2 111 98.2
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 2.1e-56 222.2 111 98.2
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 2.1e-56 222.2 111 98.2
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 2.1e-56 222.2 111 98.2
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.0e-55 219.9 111 97.3
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.7e-55 219.2 111 96.4
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 1.1e-54 216.5 111 95.5
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 3.3e-54 214.9 111 94.6
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 3.3e-54 214.9 111 94.6
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 1.6e-53 212.6 106 98.1
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.6e-53 212.6 111 92.8
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 2.8e-53 211.8 111 93.7
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 2.0e-51 205.7 111 90.1
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 5.8e-51 204.1 106 94.3
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 9.9e-51 203.4 111 89.2
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 1.3e-50 203.0 111 88.3
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 4.9e-50 201.1 111 87.4
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 4.9e-50 201.1 111 88.3
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 8.4e-50 200.3 111 87.4
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 8.4e-50 200.3 111 87.4
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 8.4e-50 200.3 111 86.5
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 1.1e-49 199.9 111 87.4
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 1.1e-49 199.9 111 87.4
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.1e-49 199.9 111 87.4
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 1.9e-49 199.1 111 87.4
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 1.9e-49 199.1 111 87.4
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.9e-49 199.1 111 87.4
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 2.4e-49 198.7 111 86.5
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 3.2e-49 198.4 111 86.5
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 4.2e-49 198.0 111 86.5
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 4.2e-49 198.0 111 86.5
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 4.2e-49 198.0 111 86.5
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 4.2e-49 198.0 111 85.6
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 5.4e-49 197.6 111 85.6
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 5.4e-49 197.6 111 85.6
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 5.4e-49 197.6 111 86.5
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 5.4e-49 197.6 111 86.5
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 7.1e-49 197.2 111 85.6
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 9.3e-49 196.8 111 84.7
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 9.3e-49 196.8 111 86.5
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 1.6e-48 196.1 111 84.7
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.6e-48 196.1 111 84.7
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 1.6e-48 196.1 111 84.7
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 1.6e-48 196.1 111 84.7
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 1.6e-48 196.1 111 85.6
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 2.1e-48 195.7 111 83.8
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 2.1e-48 195.7 111 85.6
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 2.1e-48 195.7 111 83.8
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 2.1e-48 195.7 111 83.8
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 2.1e-48 195.7 111 86.5
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 2.1e-48 195.7 111 84.7
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 2.1e-48 195.7 111 84.7
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 2.7e-48 195.3 111 84.7
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 2.7e-48 195.3 111 83.8
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 4.6e-48 194.5 111 83.8
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 4.6e-48 194.5 111 83.8
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 4.6e-48 194.5 111 82.9
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 4.6e-48 194.5 111 85.6
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 7.9e-48 193.7 111 85.6
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 1.0e-47 193.4 111 85.6
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 1.0e-47 193.4 111 85.6
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 1.0e-47 193.4 111 83.8
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 1.3e-47 193.0 111 83.8
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.7e-47 192.6 111 83.8
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.7e-47 192.6 111 82.9
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 1.7e-47 192.6 106 88.7
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.3e-47 192.2 111 83.8
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 2.3e-47 192.2 111 82.0
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 3.0e-47 191.8 111 82.0
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 3.0e-47 191.8 111 82.9
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 3.0e-47 191.8 111 84.7
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 3.9e-47 191.4 111 82.9
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 5.1e-47 191.0 111 82.9
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 5.1e-47 191.0 111 83.8
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 5.1e-47 191.0 111 82.9
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 5.1e-47 191.0 111 81.1
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 6.6e-47 190.7 111 82.9
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 6.6e-47 190.7 111 82.9
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 8.7e-47 190.3 107 86.9
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 8.7e-47 190.3 111 82.0
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.1e-46 189.9 111 82.0
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.1e-46 189.9 111 82.9
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 1.1e-46 189.9 111 83.8
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.1e-46 189.9 111 83.8
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.5e-46 189.5 111 83.8
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 2.5e-46 188.7 111 82.0
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 2.5e-46 188.7 111 82.0
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 3.3e-46 188.3 111 82.9
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 4.3e-46 188.0 111 81.1
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 5.6e-46 187.6 111 82.0
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 5.6e-46 187.6 111 81.1
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 5.6e-46 187.6 111 82.0
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 7.3e-46 187.2 111 82.9
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 9.6e-46 186.8 111 83.8
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 9.6e-46 186.8 111 79.3
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 9.6e-46 186.8 111 80.2
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 9.6e-46 186.8 111 81.1
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 1.3e-45 186.4 111 82.0
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 2.1e-45 185.7 111 81.1
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 2.8e-45 185.3 111 82.9
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 2.8e-45 185.3 106 84.0
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 6.2e-45 184.1 111 79.3
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 8.1e-45 183.7 111 80.2
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 8.1e-45 183.7 111 79.3
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 1.1e-44 183.3 94 96.8
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 3.1e-44 181.8 111 80.2
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 3.1e-44 181.8 111 80.2
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 5.3e-44 181.0 111 78.4
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 9.0e-44 180.3 111 78.4
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 5.8e-43 177.6 98 87.8
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.3e-42 176.4 103 83.5
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.9e-42 175.3 111 76.6
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.9e-41 172.6 111 73.0
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 1.9e-41 172.6 111 73.9
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.9e-41 172.6 111 73.9
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 5.4e-41 171.0 111 75.7
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 7.9e-40 167.2 93 86.0
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 7.9e-40 167.2 96 83.3
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 1.3e-39 166.4 111 69.4
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 1.8e-39 166.0 111 73.0
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 2.3e-39 165.6 111 74.8
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 3.1e-36 155.2 111 67.6
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 6.9e-36 154.1 111 66.7
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 1.1e-33 146.7 110 65.5
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.0e-31 140.2 111 57.7
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 2.3e-31 139.0 111 56.8
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 3.0e-31 138.7 111 65.8
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 1.5e-30 136.3 111 57.7
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 7.4e-30 134.0 110 56.4
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 1.3e-29 133.3 111 60.4
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.8e-29 132.1 110 54.5
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 3.1e-28 128.6 111 56.8
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 3.8e-26 121.7 84 65.5
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 6.5e-26 120.9 111 59.5
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 7.9e-24 114.0 91 62.6
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.5e-22 109.0 113 55.8
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 3.1e-12 75.5 41 75.6
BcaC06g36318 Brassica carinata HOM05D003766 ORTHO05D091022 1.4e-07 60.1 29 93.1
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-07 58.9 67 43.3
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 8.8e-07 57.4 34 79.4
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.6e-06 55.8 34 76.5
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.6e-06 55.8 34 76.5
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 5.7e-06 54.7 42 64.3


User provided reference genes

Program Settings