Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p54510 Brassica napus HOM05D014544 ORTHO05D013645 5.5e-87 324.3 169 100.0
BolC9t58318H Brassica oleracea HOM05D014544 ORTHO05D013645 1.2e-49 200.3 108 97.2
A09p48730 Brassica napus HOM05D014544 ORTHO05D013645 5.0e-48 194.9 108 92.6
BraA09t40325Z Brassica rapa HOM05D014544 ORTHO05D013645 5.0e-48 194.9 108 92.6
A06p01540 Brassica napus HOM05D014544 ORTHO05D013645 5.5e-47 191.4 108 93.5
A06p36700 Brassica napus HOM05D014544 ORTHO05D013645 5.5e-47 191.4 108 93.5
BraA06t26591Z Brassica rapa HOM05D014544 ORTHO05D013645 5.5e-47 191.4 108 93.5
BcaC07g40800 Brassica carinata HOM05D014544 ORTHO05D013645 6.6e-40 167.9 95 91.6
BcaB08g37148 Brassica carinata HOM05D000033 ORTHO05D001614 3.7e-19 99.0 52 96.2
BcaC04g19354 Brassica carinata HOM05D000033 ORTHO05D001614 2.4e-18 96.3 51 96.1
A10p27470 Brassica napus HOM05D000033 ORTHO05D001614 2.4e-18 96.3 51 96.1
C09p67540 Brassica napus HOM05D000033 ORTHO05D001614 2.4e-18 96.3 51 96.1
BolC9t59515H Brassica oleracea HOM05D000033 ORTHO05D001614 2.4e-18 96.3 51 96.1
BraA10t44799Z Brassica rapa HOM05D000033 ORTHO05D001614 2.4e-18 96.3 51 96.1
THA.LOC104799205 Tarenaya hassleriana HOM05D000033 ORTHO05D001614 4.6e-17 92.0 53 88.7
Thhalv10012534m.g Eutrema salsugineum HOM05D000033 ORTHO05D001614 7.8e-17 91.3 49 93.9
Sp6g33380 Schrenkiella parvula HOM05D000033 ORTHO05D001614 1.3e-16 90.5 50 90.0
Carub.0006s0848 Capsella rubella HOM05D000033 ORTHO05D001614 5.1e-16 88.6 50 90.0
CARHR203290 Cardamine hirsuta HOM05D000033 ORTHO05D001614 8.6e-16 87.8 48 91.7
Aa31LG1G17010 Aethionema arabicum HOM05D000033 ORTHO05D001614 1.9e-15 86.7 52 82.7
C03p04820 Brassica napus HOM05D000033 ORTHO05D001614 1.9e-15 86.7 54 81.5
BolC3t13016H Brassica oleracea HOM05D000033 ORTHO05D001614 1.9e-15 86.7 54 81.5
Aa31LG3G17110 Aethionema arabicum HOM05D000033 ORTHO05D001614 4.3e-15 85.5 52 82.7
AL6G20460 Arabidopsis lyrata HOM05D000033 ORTHO05D001614 7.3e-15 84.7 49 87.8
AT5G10020 Arabidopsis thaliana HOM05D000033 ORTHO05D001614 7.3e-15 84.7 49 87.8
A03p04370 Brassica napus HOM05D000033 ORTHO05D001614 7.3e-15 84.7 54 79.6
BraA03t09781Z Brassica rapa HOM05D000033 ORTHO05D001614 1.6e-14 83.6 53 79.2
Ciclev10024775m.g Citrus clementina HOM05D000033 ORTHO05D001614 5.2e-13 78.6 54 68.5
Actinidia08333 Actinidia chinensis HOM05D000033 ORTHO05D013645 8.9e-13 77.8 53 69.8
MELO3C007800.2 Cucumis melo HOM05D000033 ORTHO05D001614 5.8e-12 75.1 53 67.9
Actinidia33366 Actinidia chinensis HOM05D000033 ORTHO05D001614 9.9e-12 74.3 50 70.0
Gohir.D11G226100 Gossypium hirsutum HOM05D000033 ORTHO05D001614 1.3e-11 73.9 54 64.8
Gorai.007G244000 Gossypium raimondii HOM05D000033 ORTHO05D001614 1.3e-11 73.9 54 64.8
Atru.chr4.390 Acer truncatum HOM05D000033 ORTHO05D001614 2.2e-11 73.2 52 61.5
Gohir.A02G133900 Gossypium hirsutum HOM05D000033 ORTHO05D001614 2.2e-11 73.2 54 63.0
Gohir.D03G045300 Gossypium hirsutum HOM05D000033 ORTHO05D001614 2.2e-11 73.2 54 63.0
Gorai.003G046400 Gossypium raimondii HOM05D000033 ORTHO05D001614 2.2e-11 73.2 54 63.0
SGA_v2.0_scaffold47G17724 Striga asiatica HOM05D000033 ORTHO05D001614 2.2e-11 73.2 52 67.3
Thecc.01G111100 Theobroma cacao HOM05D000033 ORTHO05D001614 2.2e-11 73.2 54 64.8
EL10Ac6g14731 Beta vulgaris HOM05D000033 ORTHO05D001614 2.9e-11 72.8 54 66.7
ClCG01G019240 Citrullus lanatus HOM05D000033 ORTHO05D001614 2.9e-11 72.8 49 71.4
CsaV3_6G045930 Cucumis sativus L. HOM05D000033 ORTHO05D001614 2.9e-11 72.8 53 66.0
COL.COLO4_11029 Corchorus olitorius HOM05D000033 ORTHO05D001614 6.4e-11 71.6 54 61.1
Potri.007G082800 Populus trichocarpa HOM05D000033 ORTHO05D001614 6.4e-11 71.6 53 64.2
GSVIVG01022212001 Vitis vinifera HOM05D000033 ORTHO05D001614 6.4e-11 71.6 52 65.4
Gohir.A11G198600 Gossypium hirsutum HOM05D000033 ORTHO05D001614 8.3e-11 71.2 54 63.0
Peaxi162Scf01006g00001 Petunia axillaris HOM05D000033 ORTHO05D001614 8.3e-11 71.2 55 63.6
Sed0020699 Sechium edule HOM05D000033 ORTHO05D001614 8.3e-11 71.2 52 67.3
Cc07_g16010 Coffea canephora HOM05D000033 ORTHO05D001614 1.1e-10 70.9 64 57.8
DCAR_011441 Daucus carota HOM05D000033 ORTHO05D001614 1.4e-10 70.5 52 65.4
Nn5g28948 Nelumbo nucifera HOM05D000033 ORTHO05D001614 1.4e-10 70.5 53 64.2
Hund19667 Selenicereus undatus HOM05D000033 ORTHO05D001614 2.4e-10 69.7 52 65.4
AUR62003320 Chenopodium quinoa HOM05D000033 ORTHO05D001614 4.1e-10 68.9 53 62.3
Duzib264G0199 Durio zibethinus HOM05D000033 ORTHO05D001614 5.4e-10 68.6 56 60.7
HanXRQChr15g0471911 Helianthus annuus HOM05D000033 ORTHO05D001614 5.4e-10 68.6 55 56.4
Nitab4.5_0000156g0130 Nicotiana tabacum HOM05D000033 ORTHO05D001614 5.4e-10 68.6 67 52.2
SHI11673 Sapria himalayana HOM05D000033 ORTHO05D001614 5.4e-10 68.6 59 54.2
Aqoxy6G00499 Aquilegia oxysepala HOM05D000033 ORTHO05D001614 7.1e-10 68.2 53 66.0
ECA238G1165 Erigeron canadensis HOM05D000033 ORTHO05D001614 7.1e-10 68.2 55 60.0
Nn1g05202 Nelumbo nucifera HOM05D000033 ORTHO05D001614 7.1e-10 68.2 53 64.2
Potri.005G083000 Populus trichocarpa HOM05D000033 ORTHO05D001614 7.1e-10 68.2 51 60.8
Lj2A560T65 Lonicera japonica HOM05D000033 ORTHO05D001614 9.2e-10 67.8 54 66.7
MD01G1018100 Malus domestica HOM05D000033 ORTHO05D013645 9.2e-10 67.8 50 64.0
SalBow6G1912 Salvia bowleyana HOM05D000033 ORTHO05D001614 9.2e-10 67.8 49 67.3
SalBow6G6313 Salvia bowleyana HOM05D000033 ORTHO05D001614 9.2e-10 67.8 49 67.3
Ah.02g119230 Amaranthus hybridus HOM05D000033 ORTHO05D001614 1.2e-09 67.4 50 66.0
Hund03548 Selenicereus undatus HOM05D000033 ORTHO05D001614 1.2e-09 67.4 54 63.0
FvH4_1g22060 Fragaria vesca HOM05D000033 ORTHO05D001614 1.6e-09 67.0 51 60.8
FAN19G3167 Fragaria x ananassa HOM05D000033 ORTHO05D001614 1.6e-09 67.0 51 60.8
FAN26G0225 Fragaria x ananassa HOM05D000033 ORTHO05D001614 1.6e-09 67.0 51 60.8
PGR004G1442 Punica granatum HOM05D000033 ORTHO05D001614 1.6e-09 67.0 55 58.2
RcHm_v2.0_Chr2g0116131 Rosa chinensis HOM05D000033 ORTHO05D001614 1.6e-09 67.0 52 57.7
CSS0001371 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D001614 2.1e-09 66.6 55 60.0
AUR62016262 Chenopodium quinoa HOM05D000033 ORTHO05D001614 2.1e-09 66.6 52 61.5
FAN19G0193 Fragaria x ananassa HOM05D014544 ORTHO05D013645 2.1e-09 66.6 52 59.6
Hma1.2p1_0375F.1_g138640 Hydrangea macrophylla HOM05D000033 ORTHO05D001614 2.1e-09 66.6 52 59.6
MBI02_g13015_MAGBIO Magnolia biondii HOM05D000033 ORTHO05D001614 2.1e-09 66.6 53 62.3
Oeu002110.2 Olea europaea HOM05D000033 ORTHO05D001614 2.7e-09 66.2 69 56.5
PSO541G5239 Papaver somniferum HOM05D000033 ORTHO05D001614 2.7e-09 66.2 52 63.5
PSO675G8394 Papaver somniferum HOM05D000033 ORTHO05D001614 2.7e-09 66.2 52 63.5
Solyc04g054200.3 Solanum lycopersicum HOM05D000033 ORTHO05D001614 2.7e-09 66.2 70 48.6
Sopen04g023670 Solanum pennellii HOM05D000033 ORTHO05D001614 2.7e-09 66.2 70 48.6
Dinv00902 Davidia involucrata HOM05D000033 ORTHO05D001614 3.5e-09 65.9 51 64.7
Haze_25027 Corylus avellana HOM05D000033 ORTHO05D001614 4.6e-09 65.5 53 60.4
Dinv19507 Davidia involucrata HOM05D000033 ORTHO05D001614 4.6e-09 65.5 51 64.7
FAN23G2681 Fragaria x ananassa HOM05D000033 ORTHO05D001614 4.6e-09 65.5 50 60.0
FAN28G0439 Fragaria x ananassa HOM05D000033 ORTHO05D001614 4.6e-09 65.5 50 60.0
Glyma.04G220400 Glycine max HOM05D000033 ORTHO05D001614 4.6e-09 65.5 52 61.5
Phvul.009G140500 Phaseolus vulgaris HOM05D000033 ORTHO05D001614 4.6e-09 65.5 53 62.3
VMungo1309G0168 Vigna mungo HOM05D000033 ORTHO05D001614 4.6e-09 65.5 53 62.3
Glyma.06G145500 Glycine max HOM05D000033 ORTHO05D001614 6.0e-09 65.1 53 62.3
Nitab4.5_0000689g0010 Nicotiana tabacum HOM05D000033 ORTHO05D001614 6.0e-09 65.1 66 51.5
Sabra05G0068100 Salix brachista HOM05D000033 ORTHO05D001614 6.0e-09 65.1 51 58.8
CAN.G267.8 Capsicum annuum HOM05D000033 ORTHO05D001614 7.8e-09 64.7 54 57.4
Migut.H02415 Erythranthe guttata HOM05D000033 ORTHO05D001614 7.8e-09 64.7 50 64.0
TAR628G0245 Trochodendron aralioides HOM05D000033 ORTHO05D001614 7.8e-09 64.7 51 64.7
CSS0006075 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D001614 1.0e-08 64.3 48 62.5
Eucgr.I00330 Eucalyptus grandis HOM05D000033 ORTHO05D001614 1.0e-08 64.3 49 61.2
PGSC0003DMG400012955 Solanum tuberosum HOM05D000033 ORTHO05D001614 1.0e-08 64.3 51 60.8
FvH4_1g25730 Fragaria vesca HOM05D000033 ORTHO05D013645 1.7e-08 63.5 51 58.8
QL06p032455 Quercus lobata HOM05D000033 ORTHO05D013645 1.7e-08 63.5 53 60.4
TWI74G1470 Tripterygium wilfordii HOM05D000033 ORTHO05D001614 1.7e-08 63.5 48 64.6
vmacro12913 Vaccinium macrocarpon HOM05D000033 ORTHO05D001614 1.7e-08 63.5 54 55.6
Lalb_Chr23g0272331 Lupinus albus HOM05D000033 ORTHO05D001614 2.3e-08 63.2 52 61.5
Manes.02G167850 Manihot esculenta HOM05D014544 ORTHO05D013645 2.3e-08 63.2 48 64.6
Manes.12G141100 Manihot esculenta HOM05D000033 ORTHO05D001614 2.3e-08 63.2 47 66.0
Rhsim10G0151900 Rhododendron simsii HOM05D000033 ORTHO05D001614 2.3e-08 63.2 55 56.4
arahy.Tifrunner.gnm1.ann1.WWX9VA Arachis hypogaea HOM05D000033 ORTHO05D001614 3.0e-08 62.8 52 61.5
TWI77G0786 Tripterygium wilfordii HOM05D000033 ORTHO05D001614 3.0e-08 62.8 50 58.0
HPP92_027260 Vanilla planifolia HOM05D001408 ORTHO05D001312 3.0e-08 62.8 52 50.0
Zm00001eb327990 Zea mays HOM05D000033 ORTHO05D001614 3.0e-08 62.8 53 50.9
Zm00001eb109780 Zea mays HOM05D000033 ORTHO05D001614 3.9e-08 62.4 53 50.9
Medtr3g094710 Medicago truncatula HOM05D000033 ORTHO05D001614 5.1e-08 62.0 52 57.7
Lsat_1_v5_gn_2_67640 Lactuca sativa HOM05D000033 ORTHO05D001614 8.6e-08 61.2 54 59.3
Os07g0626500 Oryza sativa ssp. japonica HOM05D000033 ORTHO05D001614 1.1e-07 60.8 53 50.9
DCAR_000997 Daucus carota HOM05D000033 ORTHO05D001614 1.5e-07 60.5 51 54.9
SGA_v2.0_scaffold51G18735 Striga asiatica HOM05D000033 ORTHO05D001614 1.5e-07 60.5 52 55.8
Psat5g066800 Pisum sativum HOM05D000033 ORTHO05D001614 2.5e-07 59.7 53 56.6
Sc07g0001500 Simmondsia chinensis HOM05D000033 ORTHO05D001614 2.5e-07 59.7 64 48.4
TPR.G23735 Trifolium pratense HOM05D000033 ORTHO05D001614 2.5e-07 59.7 52 57.7
Lj1g0003526 Lotus japonicus HOM05D000033 ORTHO05D001614 4.3e-07 58.9 52 57.7
BcaB01g05551 Brassica carinata HOM05D000033 ORTHO05D001614 5.6e-07 58.5 35 82.9
BcaB08g36641 Brassica carinata HOM05D000159 ORTHO05D005826 5.6e-07 58.5 33 87.9
BcaC04g18642 Brassica carinata HOM05D000159 ORTHO05D005826 5.6e-07 58.5 33 87.9
A10p20800 Brassica napus HOM05D000159 ORTHO05D005826 5.6e-07 58.5 33 87.9
C09p57670 Brassica napus HOM05D000159 ORTHO05D005826 5.6e-07 58.5 33 87.9
BolC9t58634H Brassica oleracea HOM05D000159 ORTHO05D005826 5.6e-07 58.5 33 87.9
BraA10t44145Z Brassica rapa HOM05D000159 ORTHO05D005826 5.6e-07 58.5 33 87.9
CiPaw.03G135200 Carya illinoinensis HOM05D000033 ORTHO05D001614 5.6e-07 58.5 52 53.8
Lalb_Chr08g0238911 Lupinus albus HOM05D000033 ORTHO05D001614 5.6e-07 58.5 53 50.9
SGA_v2.0_scaffold2G01302 Striga asiatica HOM05D000033 ORTHO05D001614 5.6e-07 58.5 50 58.0
TAR625G0820 Trochodendron aralioides HOM05D000033 ORTHO05D001614 9.5e-07 57.8 51 56.9
ATR0564G181 Amborella trichopoda HOM05D000033 ORTHO05D001614 1.2e-06 57.4 54 51.9
MBI01_g13076_MAGBIO Magnolia biondii HOM05D002583 ORTHO05D002776 1.2e-06 57.4 41 65.9
Ca_16885_v3 Cicer arietinum L. HOM05D000033 ORTHO05D001614 1.6e-06 57.0 51 54.9
Carub.0006s1715 Capsella rubella HOM05D000159 ORTHO05D005826 2.1e-06 56.6 33 78.8
CDE03G0068 Ceratophyllum demersum HOM05D000033 ORTHO05D001614 2.1e-06 56.6 47 59.6
Sp6g25540 Schrenkiella parvula HOM05D000159 ORTHO05D005826 2.1e-06 56.6 33 81.8
BolC2t06918H Brassica oleracea HOM05D000159 ORTHO05D005826 3.6e-06 55.8 33 78.8
CARHR194170 Cardamine hirsuta HOM05D000159 ORTHO05D005826 3.6e-06 55.8 33 78.8
ClCG03G014120 Citrullus lanatus HOM05D000033 ORTHO05D001614 3.6e-06 55.8 100 38.0
Thhalv10012721m.g Eutrema salsugineum HOM05D000159 ORTHO05D005826 3.6e-06 55.8 33 78.8
TAR381G0123 Trochodendron aralioides HOM05D000033 ORTHO05D001614 3.6e-06 55.8 47 59.6
AL6G30190 Arabidopsis lyrata HOM05D000159 ORTHO05D005826 4.7e-06 55.5 33 75.8
AT5G18830 Arabidopsis thaliana HOM05D000159 ORTHO05D005826 4.7e-06 55.5 33 75.8
BcaB05g23345 Brassica carinata HOM05D000159 ORTHO05D005826 4.7e-06 55.5 33 78.8
BcaC03g13620 Brassica carinata HOM05D000159 ORTHO05D005826 4.7e-06 55.5 33 78.8
C02p10160 Brassica napus HOM05D000159 ORTHO05D005826 4.7e-06 55.5 33 78.8


User provided reference genes

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