Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 1.4e-105 386.3 199 100.0
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 9.9e-104 380.2 204 97.5
C03p50580 Brassica napus HOM05D004811 ORTHO05D017514 1.9e-94 349.4 199 92.5
BolC3t17347H Brassica oleracea HOM05D004811 ORTHO05D017514 1.5e-88 329.7 204 87.7
BcaC04g19678 Brassica carinata HOM05D004811 ORTHO05D017514 2.0e-80 302.8 191 85.3
BcaC02g08049 Brassica carinata HOM05D004811 ORTHO05D017514 2.0e-59 233.0 133 91.7
C04p59020 Brassica napus HOM05D004811 ORTHO05D017514 2.9e-47 192.6 100 96.0
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 3.6e-37 159.1 104 84.6
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 2.0e-35 153.3 104 81.7
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 2.0e-35 153.3 104 81.7
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 4.8e-34 148.7 104 79.8
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 4.8e-34 148.7 104 79.8
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 7.7e-32 141.4 102 75.5
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 2.9e-31 139.4 102 74.5
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 3.8e-31 139.0 102 75.5
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 4.2e-30 135.6 102 73.5
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 1.6e-29 133.7 110 70.0
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 2.8e-29 132.9 110 65.5
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 3.6e-29 132.5 102 72.5
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 1.5e-19 100.5 51 98.0
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 2.6e-19 99.8 102 53.9
BolC4t27414H Brassica oleracea HOM05D004811 ORTHO05D017514 1.3e-18 97.4 51 96.1
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 2.3e-15 86.7 54 85.2
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 5.0e-15 85.5 54 81.5
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 6.6e-15 85.1 54 81.5
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 6.6e-15 85.1 54 87.0
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 1.5e-14 84.0 43 93.0
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 3.3e-14 82.8 53 83.0
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 5.6e-14 82.0 53 83.0
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 5.6e-14 82.0 53 83.0
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 5.6e-14 82.0 53 83.0
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 5.6e-14 82.0 53 81.1
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 1.6e-13 80.5 53 83.0
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 3.6e-13 79.3 54 81.5
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 8.0e-13 78.2 43 86.0
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 8.0e-13 78.2 113 44.2
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 1.5e-11 73.9 49 73.5
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 2.6e-11 73.2 102 42.2
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 2.6e-11 73.2 113 39.8
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 3.4e-11 72.8 113 41.6
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 4.4e-11 72.4 165 32.7
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.3e-10 70.9 110 40.9
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 1.3e-10 70.9 102 44.1
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 1.7e-10 70.5 103 42.7
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 1.7e-10 70.5 116 39.7
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 2.2e-10 70.1 112 42.0
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 2.2e-10 70.1 109 41.3
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.2e-10 70.1 158 35.4
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 2.2e-10 70.1 112 42.9
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 2.2e-10 70.1 102 43.1
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 2.9e-10 69.7 113 38.9
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 3.7e-10 69.3 112 40.2
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 3.7e-10 69.3 112 40.2
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 4.9e-10 68.9 109 40.4
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 4.9e-10 68.9 112 38.4
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 6.4e-10 68.6 102 43.1
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 8.3e-10 68.2 113 38.1
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 1.1e-09 67.8 113 38.1
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 1.1e-09 67.8 109 41.3
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 1.4e-09 67.4 125 35.2
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 1.9e-09 67.0 107 39.3
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 2.4e-09 66.6 126 37.3
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.4e-09 66.6 117 41.0
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 2.4e-09 66.6 125 36.8
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 3.2e-09 66.2 125 34.4
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 3.2e-09 66.2 107 36.4
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 4.1e-09 65.9 102 41.2
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 5.4e-09 65.5 109 41.3
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 7.0e-09 65.1 109 38.5
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 7.0e-09 65.1 109 41.3
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 7.0e-09 65.1 125 36.8
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 9.2e-09 64.7 107 38.3
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 1.2e-08 64.3 107 38.3
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 1.2e-08 64.3 107 43.0
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 1.2e-08 64.3 107 42.1
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.6e-08 63.9 104 39.4
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 1.6e-08 63.9 119 37.8
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 2.0e-08 63.5 112 36.6
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 2.0e-08 63.5 112 34.8
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 2.7e-08 63.2 109 41.3
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 3.5e-08 62.8 88 44.3
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 3.5e-08 62.8 109 37.6
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 4.6e-08 62.4 107 39.3
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 6.0e-08 62.0 116 35.3
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 1.0e-07 61.2 107 36.4
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 1.3e-07 60.8 83 45.8
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 1.3e-07 60.8 76 44.7
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 1.7e-07 60.5 115 37.4
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 2.3e-07 60.1 102 37.3
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 3.0e-07 59.7 107 38.3
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 3.0e-07 59.7 109 33.9
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 5.0e-07 58.9 113 33.6
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 6.6e-07 58.5 107 34.6
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 8.6e-07 58.2 112 37.5
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 1.1e-06 57.8 46 60.9
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 1.5e-06 57.4 77 42.9
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 5.6e-06 55.5 104 32.7
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 5.6e-06 55.5 115 32.2
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 9.5e-06 54.7 117 37.6


User provided reference genes

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