Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p48930 Brassica napus HOM05D011861 ORTHO05D032220 9.1e-104 380.2 183 100.0
BcaC04g20003 Brassica carinata HOM05D011861 ORTHO05D032220 8.5e-94 347.1 165 100.0
BolC9t57743H Brassica oleracea HOM05D011861 ORTHO05D032220 2.4e-72 275.8 140 96.4
BcaB08g35994 Brassica carinata HOM05D011861 ORTHO05D011036 7.8e-39 164.5 83 92.8
BcaB08g35996 Brassica carinata HOM05D011861 ORTHO05D027663 1.9e-29 133.3 85 72.9
C09p48910 Brassica napus HOM05D011861 ORTHO05D027663 3.0e-22 109.4 89 59.6
C01p31410 Brassica napus HOM05D011861 ORTHO05D032435 1.9e-21 106.7 120 50.8
BolC9t57740H Brassica oleracea HOM05D011861 ORTHO05D027663 4.0e-19 99.0 75 66.7
BcaC09g49909 Brassica carinata HOM05D011861 ORTHO05D032435 2.0e-18 96.7 104 54.8
BolC1t03077H Brassica oleracea HOM05D011861 ORTHO05D032435 6.5e-17 91.7 111 49.5
CARHR113000 Cardamine hirsuta HOM05D001456 ORTHO05D011036 1.2e-15 87.4 76 59.2
C01p32090 Brassica napus HOM05D011861 ORTHO05D023701 1.8e-14 83.6 43 86.0
Carub.0007s3604 Capsella rubella HOM05D001456 ORTHO05D023701 1.6e-12 77.0 75 56.0
C01p32130 Brassica napus HOM05D011861 ORTHO05D023701 1.2e-10 70.9 54 64.8
BolC1t03141H Brassica oleracea HOM05D011861 ORTHO05D023701 1.2e-10 70.9 54 64.8
AL1G14200 Arabidopsis lyrata HOM05D001636 ORTHO05D013186 2.6e-10 69.7 82 46.3
BcaB06g29167 Brassica carinata HOM05D001636 ORTHO05D009134 1.3e-09 67.4 107 40.2
Carub.0002s0629 Capsella rubella HOM05D001636 ORTHO05D013186 1.1e-08 64.3 93 43.0
Carub.0007s3606 Capsella rubella HOM05D001456 ORTHO05D011036 4.2e-08 62.4 79 44.3
Thhalv10017769m.g Eutrema salsugineum HOM05D001456 ORTHO05D011036 4.2e-08 62.4 74 45.9
AT5G39640 Arabidopsis thaliana HOM05D001636 ORTHO05D023701 5.5e-08 62.0 58 56.9
AT5G61180 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 5.5e-08 62.0 83 43.4
C07p43040 Brassica napus HOM05D001636 ORTHO05D009134 5.5e-08 62.0 115 33.0
CARHR179320 Cardamine hirsuta HOM05D001456 ORTHO05D011036 7.2e-08 61.6 75 40.0
BcaC02g09873 Brassica carinata HOM05D001456 ORTHO05D032772 9.4e-08 61.2 77 49.4
BolC4t25235H Brassica oleracea HOM05D001456 ORTHO05D011036 9.4e-08 61.2 77 49.4
AT4G20480 Arabidopsis thaliana HOM05D001636 ORTHO05D018439 1.2e-07 60.8 71 47.9
C08p49410 Brassica napus HOM05D001456 ORTHO05D011036 1.6e-07 60.5 88 39.8
BolC8t52477H Brassica oleracea HOM05D001456 ORTHO05D011036 1.6e-07 60.5 88 39.8
CARHR005160 Cardamine hirsuta HOM05D001456 ORTHO05D011036 1.6e-07 60.5 74 44.6
C01p00030 Brassica napus HOM05D001456 ORTHO05D031996 2.7e-07 59.7 75 42.7
Thhalv10017693m.g Eutrema salsugineum HOM05D001456 ORTHO05D011317 2.7e-07 59.7 73 45.2
AL3G38360 Arabidopsis lyrata HOM05D001636 ORTHO05D018456 3.6e-07 59.3 81 44.4
BcaC01g00880 Brassica carinata HOM05D001456 ORTHO05D011036 3.6e-07 59.3 85 38.8
C03p85540 Brassica napus HOM05D001456 ORTHO05D002799 3.6e-07 59.3 85 38.8
Thhalv10017671m.g Eutrema salsugineum HOM05D001636 ORTHO05D011317 4.6e-07 58.9 73 43.8
Sc05g0000120 Simmondsia chinensis HOM05D001456 ORTHO05D002799 4.6e-07 58.9 75 41.3
BraA05t18996Z Brassica rapa HOM05D001636 ORTHO05D018456 6.1e-07 58.5 92 39.1
Aa31LG11G2180 Aethionema arabicum HOM05D001456 ORTHO05D002799 7.9e-07 58.2 76 42.1
AL6G52880 Arabidopsis lyrata HOM05D001636 ORTHO05D013186 7.9e-07 58.2 82 40.2
BNapus_Darmor_BZH_scaffold_188p00110 Brassica napus HOM05D001636 ORTHO05D018456 7.9e-07 58.2 92 39.1
C04p00350 Brassica napus HOM05D001636 ORTHO05D018456 7.9e-07 58.2 92 39.1
BolC4t21677H Brassica oleracea HOM05D001636 ORTHO05D018456 7.9e-07 58.2 92 39.1
BolSC55t61225H Brassica oleracea HOM05D001636 ORTHO05D018456 7.9e-07 58.2 92 39.1
BcaB03g11817 Brassica carinata HOM05D001456 ORTHO05D002799 1.0e-06 57.8 82 39.0
C01p02860 Brassica napus HOM05D002637 ORTHO05D016052 1.0e-06 57.8 70 45.7
AL1G45330 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 1.4e-06 57.4 77 45.5
CARHR274910 Cardamine hirsuta HOM05D001456 ORTHO05D002799 1.4e-06 57.4 85 38.8
BolC3t20841H Brassica oleracea HOM05D001456 ORTHO05D002799 1.8e-06 57.0 85 37.6
Carub.0001s4175 Capsella rubella HOM05D001636 ORTHO05D013186 1.8e-06 57.0 88 40.9
Thhalv10024069m.g Eutrema salsugineum HOM05D001636 ORTHO05D009134 2.3e-06 56.6 88 44.3
Manes.08G107800 Manihot esculenta HOM05D001456 ORTHO05D002799 2.3e-06 56.6 75 38.7
Oeu000099.1 Olea europaea HOM05D001456 ORTHO05D002799 2.3e-06 56.6 71 42.3
Sp5g22790 Schrenkiella parvula HOM05D001456 ORTHO05D002799 2.3e-06 56.6 84 38.1
Actinidia01663 Actinidia chinensis HOM05D001456 ORTHO05D002799 3.0e-06 56.2 91 36.3
BcaNung01309 Brassica carinata HOM05D001456 ORTHO05D031996 3.0e-06 56.2 72 41.7
BolC1t00009H Brassica oleracea HOM05D001456 ORTHO05D031996 3.0e-06 56.2 72 41.7
FAN28G1216 Fragaria x ananassa HOM05D001456 ORTHO05D002799 3.0e-06 56.2 93 33.3
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 3.9e-06 55.8 76 43.4
BcaC02g12798 Brassica carinata HOM05D001636 ORTHO05D018456 3.9e-06 55.8 72 44.4
Sed0015340 Sechium edule HOM05D001456 ORTHO05D002799 3.9e-06 55.8 75 38.7
AL1G10300 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 5.1e-06 55.5 80 38.8
C05p29980 Brassica napus HOM05D001636 ORTHO05D027512 5.1e-06 55.5 68 51.5
BolC5t31733H Brassica oleracea HOM05D001636 ORTHO05D027512 5.1e-06 55.5 68 51.5
Carub.0008s0675 Capsella rubella HOM05D001636 ORTHO05D013186 6.7e-06 55.1 115 33.0
SalBow4G0536 Salvia bowleyana HOM05D001456 ORTHO05D002799 6.7e-06 55.1 75 40.0
SalBow4G1768 Salvia bowleyana HOM05D001456 ORTHO05D002799 6.7e-06 55.1 75 40.0
Aa31LG11G2170 Aethionema arabicum HOM05D001456 ORTHO05D002799 8.8e-06 54.7 75 42.7
BcaNung02002 Brassica carinata HOM05D001636 ORTHO05D009134 8.8e-06 54.7 94 35.1
A01p01530 Brassica napus HOM05D002637 ORTHO05D016052 8.8e-06 54.7 73 43.8
A06p35510 Brassica napus HOM05D001636 ORTHO05D009134 8.8e-06 54.7 94 35.1
BolC7t44832H Brassica oleracea HOM05D001636 ORTHO05D009134 8.8e-06 54.7 94 35.1
BraA01t00146Z Brassica rapa HOM05D002637 ORTHO05D016052 8.8e-06 54.7 73 43.8
BraA06t26475Z Brassica rapa HOM05D001636 ORTHO05D009134 8.8e-06 54.7 94 35.1
CSS0023005 Camellia sinensis var. sinensis HOM05D001456 ORTHO05D002799 8.8e-06 54.7 75 38.7
COL.COLO4_23147 Corchorus olitorius HOM05D001456 ORTHO05D002799 8.8e-06 54.7 75 38.7
Duzib138G0531 Durio zibethinus HOM05D001456 ORTHO05D002799 8.8e-06 54.7 75 38.7
Duzib211G0259 Durio zibethinus HOM05D001456 ORTHO05D002799 8.8e-06 54.7 75 38.7
Migut.N00970 Erythranthe guttata HOM05D001456 ORTHO05D002799 8.8e-06 54.7 74 40.5
Gohir.A12G120700 Gossypium hirsutum HOM05D001456 ORTHO05D002799 8.8e-06 54.7 75 38.7
Gohir.D12G124500 Gossypium hirsutum HOM05D001456 ORTHO05D002799 8.8e-06 54.7 75 38.7
Gorai.008G135500 Gossypium raimondii HOM05D001456 ORTHO05D002799 8.8e-06 54.7 75 38.7
Oeu036643.2 Olea europaea HOM05D001456 ORTHO05D002799 8.8e-06 54.7 71 42.3


User provided reference genes

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