Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 0.0e+00 1165.2 715 100.0
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 0.0e+00 1099.0 733 94.5
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 0.0e+00 1079.3 735 92.9
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 4.9e-312 1074.3 770 86.4
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 7.7e-308 1060.1 732 90.7
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 1.8e-304 1048.9 734 89.2
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 2.3e-304 1048.5 732 89.3
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 1.5e-303 1045.8 734 89.9
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 2.2e-302 1042.0 732 87.4
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 2.0e-300 1035.4 732 85.8
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 7.7e-300 1033.5 734 88.6
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 1.0e-299 1033.1 734 89.0
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 1.0e-299 1033.1 734 87.3
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 2.3e-296 1021.9 759 82.7
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 1.3e-291 1006.1 761 75.4
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 3.3e-290 1001.5 732 86.3
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 1.2e-279 966.5 735 85.0
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 2.6e-279 965.3 735 83.1
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 3.7e-270 934.9 735 79.2
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 8.4e-254 880.6 769 76.1
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 1.5e-223 780.0 752 67.2
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 5.9e-223 778.1 749 67.2
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 6.5e-222 774.6 754 67.2
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 9.7e-218 760.8 748 67.0
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 2.2e-217 759.6 758 68.2
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.8e-217 759.2 748 70.6
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 2.8e-217 759.2 750 66.3
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.2e-217 757.7 748 70.5
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.8e-216 756.5 749 70.5
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.8e-216 756.5 750 68.3
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.8e-216 756.5 750 68.3
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.3e-216 755.0 749 70.4
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 9.1e-216 754.2 739 68.6
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 1.0e-214 750.7 633 64.6
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 1.1e-213 747.3 768 65.6
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 1.9e-213 746.5 749 67.2
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 2.1e-212 743.0 753 66.5
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 6.1e-212 741.5 753 65.6
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 1.1e-210 737.3 797 52.8
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 2.0e-210 736.5 641 62.2
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 4.8e-209 731.9 746 66.6
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 4.5e-207 725.3 775 63.9
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 4.5e-207 725.3 744 66.1
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 5.9e-207 724.9 756 65.1
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 5.9e-207 724.9 771 64.1
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 5.9e-207 724.9 747 65.3
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 1.0e-206 724.2 740 65.1
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 1.0e-206 724.2 747 66.0
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 2.9e-206 722.6 757 64.9
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 2.9e-206 722.6 743 65.5
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.1e-205 720.7 761 65.3
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 2.1e-204 716.5 746 64.5
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 2.7e-204 716.1 742 65.1
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 6.1e-204 714.9 755 65.2
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 7.9e-204 714.5 761 63.7
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 7.9e-204 714.5 762 65.4
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.0e-203 714.1 754 64.6
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.4e-203 713.8 741 65.6
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 1.8e-203 713.4 767 64.5
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 3.9e-203 712.2 747 66.9
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 3.9e-203 712.2 755 65.3
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 5.2e-203 711.8 741 64.2
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 6.7e-203 711.4 754 64.6
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 8.8e-203 711.1 754 68.0
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 4.4e-202 708.8 756 64.2
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 9.7e-202 707.6 751 63.9
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 1.7e-201 706.8 752 67.0
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 2.2e-201 706.4 754 67.8
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 2.2e-201 706.4 764 63.0
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 2.2e-201 706.4 826 60.0
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 2.8e-201 706.1 764 62.8
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 2.8e-201 706.1 754 66.8
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 4.8e-201 705.3 742 65.6
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 8.2e-201 704.5 752 66.9
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 1.1e-200 704.1 755 63.4
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 1.8e-200 703.4 769 63.8
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 5.3e-200 701.8 779 63.3
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 1.2e-199 700.7 760 64.5
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 7.7e-199 698.0 787 61.2
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 1.7e-198 696.8 776 61.9
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 5.0e-198 695.3 760 62.4
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 8.5e-198 694.5 738 62.9
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 9.4e-197 691.0 749 65.0
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 3.6e-196 689.1 749 65.3
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 1.0e-195 687.6 751 64.2
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 1.4e-195 687.2 755 64.8
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.5e-194 683.7 749 65.2
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 2.2e-193 679.9 741 66.1
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.4e-192 677.2 786 51.5
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 3.1e-192 676.0 759 61.5
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 1.6e-191 673.7 732 66.1
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.7e-190 670.2 639 60.7
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 8.5e-190 667.9 680 68.2
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 1.5e-189 667.2 844 57.2
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 7.2e-189 664.8 842 60.2
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 5.2e-187 658.7 790 52.5
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 3.1e-184 649.4 747 60.8
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 7.0e-184 648.3 780 59.6
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 8.6e-182 641.3 748 62.3
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 1.1e-181 641.0 781 58.8
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 2.3e-171 606.7 752 61.4
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 6.6e-166 588.6 808 57.2
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 3.3e-165 586.3 792 55.3
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 1.9e-157 560.5 751 56.5
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 3.3e-157 559.7 772 46.2
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 3.3e-157 559.7 567 60.8
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 3.9e-150 536.2 546 68.3
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 7.3e-149 531.9 764 53.7
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 2.2e-145 520.4 774 54.9
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 6.4e-145 518.8 544 59.4
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 2.1e-143 513.8 718 56.5
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 6.0e-135 485.7 750 54.3
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 7.8e-135 485.3 748 54.5
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 1.7e-134 484.2 762 53.7
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 2.4e-131 473.8 753 54.1
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 7.6e-130 468.8 451 57.6
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 2.3e-110 404.1 441 52.6
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 2.6e-106 390.6 538 46.1
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 3.6e-103 380.2 604 43.4
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.8e-92 344.0 383 52.0
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 8.2e-92 342.4 483 46.4
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 1.7e-89 334.7 311 80.4
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 6.5e-89 332.8 386 68.9
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 9.4e-88 328.9 338 76.3
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 8.2e-84 315.8 304 80.9
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 4.4e-77 293.5 382 48.7
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 2.8e-76 290.8 477 42.1
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 2.9e-65 254.2 745 31.7
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 2.5e-64 251.1 333 47.1
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 6.8e-62 243.0 184 63.0
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 8.9e-62 242.7 848 38.1
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.8e-54 216.5 126 84.1
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 1.3e-49 202.2 711 28.8
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.0e-41 176.0 181 54.7
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.1e-39 166.4 98 83.7
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.8e-37 160.2 90 85.6
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 6.4e-36 156.8 96 76.0
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.3e-32 143.3 226 40.7
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 9.5e-32 142.9 233 40.3
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 5.2e-30 137.1 93 80.6
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.9e-30 136.3 76 86.8
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.8e-29 133.7 84 79.8
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.8e-28 131.0 83 74.7
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.2e-27 127.5 68 88.2
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.5e-26 124.4 66 84.8
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 6.0e-26 123.6 166 48.8
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.6e-24 116.3 104 58.7
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 8.1e-23 113.2 70 77.1
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.3e-22 110.5 61 83.6
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-21 109.4 77 71.4
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 1.2e-21 109.4 141 47.5
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 2.6e-21 108.2 119 60.5
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 1.9e-19 102.1 155 91.6
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.4e-19 101.7 60 81.7
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 1.0e-17 96.3 123 48.0
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 5.6e-16 90.5 146 39.7
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 2.1e-15 88.6 89 60.7
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 3.6e-15 87.8 154 85.1
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.2e-12 78.6 100 56.0
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 3.2e-11 74.7 182 33.0
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 3.2e-11 74.7 105 48.6
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-10 72.4 60 66.7
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 3.5e-10 71.2 190 29.5
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 6.7e-09 67.0 33 93.9
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 8.7e-09 66.6 109 42.2
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 4.3e-08 64.3 41 73.2
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 9.6e-08 63.2 96 45.8
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.4e-06 59.3 33 78.8
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 5.3e-06 57.4 32 78.1
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 5.3e-06 57.4 33 75.8
Gohir.A10G243600 Gossypium hirsutum HOM05D004098 ORTHO05D005454 6.9e-06 57.0 25 96.0


User provided reference genes

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