Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 1.3e-165 586.6 378 100.0
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 3.8e-165 585.1 378 99.7
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 8.9e-146 520.8 387 92.0
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 1.6e-142 510.0 279 90.7
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 9.6e-132 474.2 279 86.4
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 1.4e-127 460.3 283 82.3
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 1.5e-116 423.7 282 75.2
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 8.7e-109 397.9 278 73.0
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 1.9e-108 396.7 281 73.7
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 1.3e-101 374.0 273 71.8
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 2.3e-101 373.2 313 65.2
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 6.5e-96 355.1 299 62.9
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 7.5e-60 235.3 265 49.4
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 1.3e-56 224.6 278 45.7
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 7.2e-55 218.8 295 45.4
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 1.6e-54 217.6 311 41.5
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 6.1e-54 215.7 274 45.6
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 1.4e-53 214.5 327 40.4
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 5.2e-53 212.6 284 43.3
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 4.4e-52 209.5 185 54.6
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 5.7e-52 209.1 185 53.5
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 9.8e-52 208.4 233 48.9
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 1.7e-51 207.6 185 54.6
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 2.2e-51 207.2 323 41.2
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 2.8e-51 206.8 290 43.4
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 4.9e-51 206.1 188 53.7
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 4.9e-51 206.1 288 43.1
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 4.1e-50 203.0 301 41.9
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 2.0e-49 200.7 178 53.9
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 1.7e-48 197.6 278 41.0
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 5.6e-47 192.6 282 42.2
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 1.2e-46 191.4 187 46.5
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 8.0e-46 188.7 285 40.4
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 1.4e-45 188.0 263 44.5
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 8.9e-45 185.3 289 38.4
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 1.2e-44 184.9 282 40.8
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 1.1e-42 178.3 191 45.5
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 5.4e-42 176.0 284 39.1
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 4.6e-41 172.9 328 37.5
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 1.0e-40 171.8 291 37.5
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 2.3e-40 170.6 259 42.9
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 5.6e-39 166.0 313 35.8
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 7.3e-39 165.6 256 38.3
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.2e-36 158.3 233 43.8
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 3.4e-36 156.8 213 43.7
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 2.2e-35 154.1 111 59.5
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 2.9e-35 153.7 229 42.4
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 8.3e-35 152.1 200 42.0
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 2.8e-30 137.1 281 38.1
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 2.3e-29 134.0 280 35.0
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 3.1e-29 133.7 281 34.9
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 4.0e-29 133.3 215 40.0
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 1.2e-28 131.7 160 39.4
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 1.5e-28 131.3 125 51.2
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 1.7e-27 127.9 204 39.2
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 4.9e-27 126.3 264 36.7
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 9.2e-26 122.1 177 40.7
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 6.0e-25 119.4 127 48.8
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 1.5e-23 114.8 176 38.1
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 4.3e-23 113.2 302 29.8
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 4.0e-21 106.7 348 29.6
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 1.2e-20 105.1 136 41.2
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 7.6e-20 102.4 198 28.8
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 7.6e-20 102.4 120 41.7
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.9e-19 100.5 151 33.8
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 4.9e-19 99.8 198 28.3
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 1.4e-18 98.2 101 42.6
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 1.9e-18 97.8 119 41.2
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 2.4e-18 97.4 155 33.5
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 3.2e-18 97.1 120 40.0
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 4.1e-18 96.7 115 40.0
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 1.6e-17 94.7 118 39.8
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 1.6e-17 94.7 118 39.8
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 1.6e-17 94.7 150 37.3
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 1.6e-17 94.7 182 32.4
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 2.1e-17 94.4 174 32.8
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 2.7e-17 94.0 147 36.1
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 4.6e-17 93.2 136 37.5
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 6.0e-17 92.8 166 39.2
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 7.8e-17 92.4 136 37.5
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 1.0e-16 92.0 147 35.4
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 1.7e-16 91.3 118 41.5
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 5.1e-16 89.7 136 36.8
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 5.1e-16 89.7 136 36.8
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 5.1e-16 89.7 118 39.8
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 5.1e-16 89.7 106 43.4
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.1e-15 88.6 146 33.6
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 1.5e-15 88.2 154 31.8
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 1.9e-15 87.8 118 39.8
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 1.9e-15 87.8 118 39.8
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 1.9e-15 87.8 118 39.8
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 1.9e-15 87.8 160 31.9
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 2.5e-15 87.4 118 39.0
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 4.3e-15 86.7 116 38.8
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 9.6e-15 85.5 128 38.3
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 1.2e-14 85.1 156 34.0
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.2e-14 85.1 141 36.9
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 1.2e-14 85.1 114 41.2
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 8.1e-14 82.4 127 36.2
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 4.4e-12 76.6 122 45.9
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 4.4e-12 76.6 132 36.4
AUR62037803 Chenopodium quinoa HOM05D007742 ORTHO05D004072 1.7e-11 74.7 114 36.0
Haze_16000 Corylus avellana HOM05D013106 ORTHO05D017812 1.7e-11 74.7 164 28.0
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 1.7e-11 74.7 129 34.1
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 2.2e-11 74.3 129 34.1
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 3.8e-11 73.6 128 35.9
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 3.8e-11 73.6 109 36.7
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 4.9e-11 73.2 124 33.9
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 4.9e-11 73.2 134 35.1
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 6.4e-11 72.8 47 57.4
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 2.1e-09 67.8 118 33.9
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 2.1e-09 67.8 137 31.4
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 4.6e-09 66.6 150 29.3
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 4.6e-09 66.6 129 34.9
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 1.0e-08 65.5 187 27.8
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.7e-08 64.7 48 54.2
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 1.7e-08 64.7 114 32.5
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 6.6e-08 62.8 48 50.0
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 8.7e-08 62.4 171 29.2
PRCOL_00006794 Prasinoderma coloniale HOM05D008124 ORTHO05D004072 8.7e-08 62.4 108 34.3
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 2.5e-07 60.8 158 29.1
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 3.3e-07 60.5 64 37.5
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 4.3e-07 60.1 183 26.2
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 9.6e-07 58.9 38 63.2
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 9.6e-07 58.9 38 63.2
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 1.3e-06 58.5 104 36.5
Lsat_1_v5_gn_4_63641 Lactuca sativa HOM05D010091 ORTHO05D012356 1.3e-06 58.5 44 56.8
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 2.1e-06 57.8 114 35.1
CSS0002164 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.8e-06 57.4 58 39.7
CSS0011273 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.8e-06 57.4 58 39.7
Hma1.2p1_2779F.1_g328290 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.8e-06 57.4 64 42.2
Lsat_1_v5_gn_2_55560 Lactuca sativa HOM05D010091 ORTHO05D012356 2.8e-06 57.4 44 54.5
Hma1.2p1_0211F.1_g089820 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.6e-06 57.0 64 42.2
Lsat_1_v5_gn_0_12581 Lactuca sativa HOM05D010091 ORTHO05D012356 3.6e-06 57.0 44 54.5
Lsat_1_v5_gn_1_98500 Lactuca sativa HOM05D010091 ORTHO05D012356 3.6e-06 57.0 44 54.5
Lsat_1_v5_gn_3_18240 Lactuca sativa HOM05D010091 ORTHO05D012356 3.6e-06 57.0 44 54.5
Lsat_1_v5_gn_7_32160 Lactuca sativa HOM05D010091 ORTHO05D012356 3.6e-06 57.0 44 54.5
Lsat_1_v5_gn_7_32200 Lactuca sativa HOM05D010091 ORTHO05D012356 3.6e-06 57.0 44 54.5
Solyc03g096303.1 Solanum lycopersicum HOM05D009408 ORTHO05D000309 3.6e-06 57.0 63 39.7
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 3.6e-06 57.0 72 44.4
Lsat_1_v5_gn_9_80080 Lactuca sativa HOM05D010091 ORTHO05D012356 4.8e-06 56.6 44 54.5
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 6.2e-06 56.2 58 43.1
Lsat_1_v5_gn_3_56760 Lactuca sativa HOM05D010091 ORTHO05D000529 6.2e-06 56.2 70 38.6
Lsat_1_v5_gn_2_74380 Lactuca sativa HOM05D010091 ORTHO05D012356 8.1e-06 55.8 44 54.5
Solyc09g072730.2 Solanum lycopersicum HOM05D009408 ORTHO05D000309 8.1e-06 55.8 42 52.4
Solyc10g055427.1 Solanum lycopersicum HOM05D009408 ORTHO05D000309 8.1e-06 55.8 42 52.4
Solyc10g080784.1 Solanum lycopersicum HOM05D008169 ORTHO05D004497 8.1e-06 55.8 42 52.4


User provided reference genes

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