Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p45800 Brassica napus HOM05D010848 ORTHO05D024476 5.2e-125 451.1 225 100.0
BolC2t09132H Brassica oleracea HOM05D010848 ORTHO05D000427 4.2e-111 404.8 208 97.1
C06p33930 Brassica napus HOM05D010848 ORTHO05D024476 4.3e-79 298.5 154 95.5
BcaC01g01669 Brassica carinata HOM05D010848 ORTHO05D024476 2.2e-75 286.2 143 97.2
BolC1t05606H Brassica oleracea HOM05D010848 ORTHO05D024476 9.2e-74 280.8 144 95.1
BolC6t38506H Brassica oleracea HOM05D010848 ORTHO05D024476 3.5e-65 252.3 127 97.6
BcaC09g48750 Brassica carinata HOM05D010848 ORTHO05D093948 4.6e-25 119.0 86 73.3
BcaB06g27675 Brassica carinata HOM05D001780 ORTHO05D004373 4.4e-15 85.9 102 52.9
BcaC02g08915 Brassica carinata HOM05D001780 ORTHO05D004373 4.4e-15 85.9 102 52.9
A04p14990 Brassica napus HOM05D001780 ORTHO05D004373 4.4e-15 85.9 102 52.9
C04p49170 Brassica napus HOM05D001780 ORTHO05D004373 4.4e-15 85.9 102 52.9
BolC4t26502H Brassica oleracea HOM05D001780 ORTHO05D004373 4.4e-15 85.9 102 52.9
BraA04t17141Z Brassica rapa HOM05D001780 ORTHO05D004373 4.4e-15 85.9 102 52.9
Thhalv10027624m.g Eutrema salsugineum HOM05D001780 ORTHO05D004373 4.1e-13 79.3 102 50.0
Sp7g00280 Schrenkiella parvula HOM05D001780 ORTHO05D004373 1.6e-12 77.4 102 49.0
Aa31LG10G13700 Aethionema arabicum HOM05D001780 ORTHO05D004373 2.6e-12 76.6 102 48.0
THA.LOC104803625 Tarenaya hassleriana HOM05D001780 ORTHO05D004373 2.6e-12 76.6 102 48.0
MD04G1037200 Malus domestica HOM05D001780 ORTHO05D004373 3.5e-12 76.3 104 44.2
CARHR218340 Cardamine hirsuta HOM05D001780 ORTHO05D004373 4.5e-12 75.9 130 41.5
Carub.0006s2892 Capsella rubella HOM05D001780 ORTHO05D004373 5.9e-12 75.5 102 47.1
Cpa.g.sc32.3 Carica papaya HOM05D001780 ORTHO05D004373 5.9e-12 75.5 102 47.1
Lj6C607G11 Lonicera japonica HOM05D001780 ORTHO05D004373 2.2e-11 73.6 93 50.5
AL7G50050 Arabidopsis lyrata HOM05D001780 ORTHO05D004373 2.9e-11 73.2 171 34.5
Gohir.D01G221100 Gossypium hirsutum HOM05D001780 ORTHO05D004373 3.8e-11 72.8 104 43.3
arahy.Tifrunner.gnm1.ann1.05K2HA Arachis hypogaea HOM05D001780 ORTHO05D004373 5.0e-11 72.4 103 44.7
arahy.Tifrunner.gnm1.ann1.AHZV2Y Arachis hypogaea HOM05D001780 ORTHO05D004373 5.0e-11 72.4 103 44.7
Gohir.A01G231000 Gossypium hirsutum HOM05D001780 ORTHO05D004373 5.0e-11 72.4 104 43.3
Gorai.002G267700 Gossypium raimondii HOM05D001780 ORTHO05D004373 5.0e-11 72.4 104 43.3
Phvul.011G023400 Phaseolus vulgaris HOM05D001780 ORTHO05D004373 8.5e-11 71.6 101 44.6
VMungo1127G1244 Vigna mungo HOM05D001780 ORTHO05D004373 8.5e-11 71.6 101 44.6
Atru.chr3.1561 Acer truncatum HOM05D001780 ORTHO05D004373 1.1e-10 71.2 102 45.1
Atru.chr3.1583 Acer truncatum HOM05D001780 ORTHO05D004373 1.1e-10 71.2 102 45.1
SGA_v2.0_scaffold29G12214 Striga asiatica HOM05D001780 ORTHO05D004373 1.5e-10 70.9 98 45.9
Atru.chr12.1705 Acer truncatum HOM05D001780 ORTHO05D004373 1.9e-10 70.5 102 44.1
AL6G44170 Arabidopsis lyrata HOM05D001780 ORTHO05D004373 1.9e-10 70.5 102 45.1
Ca_26060_v3 Cicer arietinum L. HOM05D001780 ORTHO05D004373 1.9e-10 70.5 101 43.6
FAN17G1933 Fragaria x ananassa HOM05D001780 ORTHO05D004373 1.9e-10 70.5 104 42.3
CANSAT78G0939 Cannabis sativa HOM05D001780 ORTHO05D004373 2.5e-10 70.1 102 42.2
AT4G10320 Arabidopsis thaliana HOM05D001780 ORTHO05D004373 3.2e-10 69.7 102 45.1
MSTRG.21338 Avicennia marina HOM05D001780 ORTHO05D004373 3.2e-10 69.7 102 44.1
COL.COLO4_14418 Corchorus olitorius HOM05D001780 ORTHO05D004373 3.2e-10 69.7 104 44.2
Eucgr.H00404 Eucalyptus grandis HOM05D001780 ORTHO05D004373 3.2e-10 69.7 104 42.3
Cc04_g11170 Coffea canephora HOM05D001780 ORTHO05D004373 4.2e-10 69.3 98 45.9
Duzib106G1771 Durio zibethinus HOM05D001780 ORTHO05D004373 4.2e-10 69.3 108 43.5
Thecc.05G003300 Theobroma cacao HOM05D001780 ORTHO05D004373 4.2e-10 69.3 99 43.4
unitig_0.g306 Utricularia gibba HOM05D001780 ORTHO05D004373 4.2e-10 69.3 100 45.0
Actinidia34617 Actinidia chinensis HOM05D001780 ORTHO05D004373 5.5e-10 68.9 106 43.4
TWI63G0569 Tripterygium wilfordii HOM05D001780 ORTHO05D004373 5.5e-10 68.9 102 45.1
COL.COLO4_24691 Corchorus olitorius HOM05D001780 ORTHO05D004373 7.2e-10 68.6 104 44.2
Lj3g0013099 Lotus japonicus HOM05D001780 ORTHO05D004373 7.2e-10 68.6 101 43.6
Manes.04G040600 Manihot esculenta HOM05D001780 ORTHO05D004373 7.2e-10 68.6 109 42.2
Psat7g172640 Pisum sativum HOM05D001780 ORTHO05D004373 7.2e-10 68.6 101 43.6
FvH4_4g11470 Fragaria vesca HOM05D001780 ORTHO05D004373 9.4e-10 68.2 104 41.3
FAN07G0072 Fragaria x ananassa HOM05D001780 ORTHO05D004373 9.4e-10 68.2 104 41.3
FAN17G0725 Fragaria x ananassa HOM05D001780 ORTHO05D004373 9.4e-10 68.2 104 41.3
FAN17G1275 Fragaria x ananassa HOM05D001780 ORTHO05D004373 9.4e-10 68.2 104 41.3
Medtr4g076850 Medicago truncatula HOM05D001780 ORTHO05D004373 9.4e-10 68.2 101 43.6
Actinidia35963 Actinidia chinensis HOM05D001780 ORTHO05D004373 1.2e-09 67.8 211 32.7
CiPaw.01G102300 Carya illinoinensis HOM05D001780 ORTHO05D004373 1.2e-09 67.8 110 40.9
C07p51720 Brassica napus HOM05D001780 ORTHO05D004373 1.6e-09 67.4 103 45.6
C07p51740 Brassica napus HOM05D001780 ORTHO05D004373 1.6e-09 67.4 111 44.1
BcaC08g43402 Brassica carinata HOM05D001780 ORTHO05D004373 2.1e-09 67.0 111 43.2
C06p07700 Brassica napus HOM05D001780 ORTHO05D004373 2.1e-09 67.0 111 43.2
Cfa015768 Carpinus fangiana HOM05D001780 ORTHO05D004373 2.1e-09 67.0 100 43.0
Nn1g08648 Nelumbo nucifera HOM05D001780 ORTHO05D004373 2.1e-09 67.0 109 40.4
TAR362G1083 Trochodendron aralioides HOM05D001780 ORTHO05D004373 2.1e-09 67.0 109 39.4
MD09G1065200 Malus domestica HOM05D001780 ORTHO05D004373 2.7e-09 66.6 104 41.3
GSVIVG01010735001 Vitis vinifera HOM05D001780 ORTHO05D004373 2.7e-09 66.6 102 42.2
Oeu025915.1 Olea europaea HOM05D001780 ORTHO05D004373 3.6e-09 66.2 110 40.0
PSO063G4644 Papaver somniferum HOM05D001780 ORTHO05D004373 3.6e-09 66.2 97 44.3
TPR.G13745 Trifolium pratense HOM05D001780 ORTHO05D004373 3.6e-09 66.2 171 33.3
BolC6t35859H Brassica oleracea HOM05D001780 ORTHO05D004373 4.7e-09 65.9 111 42.3
Ciclev10018576m.g Citrus clementina HOM05D001780 ORTHO05D004373 4.7e-09 65.9 104 41.3
Dinv15122 Davidia involucrata HOM05D001780 ORTHO05D004373 4.7e-09 65.9 100 46.0
FAN22G0035 Fragaria x ananassa HOM05D001780 ORTHO05D004373 4.7e-09 65.9 104 40.4
BraA03t14408Z Brassica rapa HOM05D001780 ORTHO05D004373 6.1e-09 65.5 103 43.7
Oeu061694.1 Olea europaea HOM05D001780 ORTHO05D004373 6.1e-09 65.5 97 45.4
Sabra17G0020800 Salix brachista HOM05D001780 ORTHO05D004373 6.1e-09 65.5 101 41.6
A03p53410 Brassica napus HOM05D001780 ORTHO05D004373 8.0e-09 65.1 103 43.7
CAN.G1186.25 Capsicum annuum HOM05D001780 ORTHO05D004373 8.0e-09 65.1 100 44.0
Lalb_Chr09g0320441 Lupinus albus HOM05D001780 ORTHO05D004373 8.0e-09 65.1 101 41.6
BcaNung01700 Brassica carinata HOM05D001780 ORTHO05D004373 1.0e-08 64.7 110 41.8
MELO3C017728.2 Cucumis melo HOM05D001780 ORTHO05D004373 1.0e-08 64.7 104 40.4
Glyma.11G094300 Glycine max HOM05D001780 ORTHO05D004373 1.0e-08 64.7 101 41.6
Glyma.12G020700 Glycine max HOM05D001780 ORTHO05D004373 1.0e-08 64.7 101 41.6
Potri.007G126501 Populus trichocarpa HOM05D001780 ORTHO05D004373 1.0e-08 64.7 101 42.6
RcHm_v2.0_Chr4g0408181 Rosa chinensis HOM05D001780 ORTHO05D004373 1.0e-08 64.7 102 40.2
PGSC0003DMG400013343 Solanum tuberosum HOM05D001780 ORTHO05D004373 1.0e-08 64.7 102 43.1
BcaNung01699 Brassica carinata HOM05D001780 ORTHO05D004373 1.4e-08 64.3 103 41.7
Dinv44242 Davidia involucrata HOM05D001780 ORTHO05D004373 1.4e-08 64.3 102 42.2
Sed0001787 Sechium edule HOM05D001780 ORTHO05D004373 1.4e-08 64.3 104 40.4
Sopen11g006930 Solanum pennellii HOM05D001780 ORTHO05D004373 1.4e-08 64.3 102 43.1
DCAR_019070 Daucus carota HOM05D001780 ORTHO05D004373 1.8e-08 63.9 98 44.9
Potri.017G033200 Populus trichocarpa HOM05D001780 ORTHO05D004373 1.8e-08 63.9 101 41.6
Prupe.1G186600 Prunus persica HOM05D001780 ORTHO05D004373 1.8e-08 63.9 99 41.4
Lsat_1_v5_gn_5_77240 Lactuca sativa HOM05D001780 ORTHO05D004373 2.3e-08 63.5 102 44.1
QL10p047812 Quercus lobata HOM05D001780 ORTHO05D004373 2.3e-08 63.5 97 39.2
Nitab4.5_0000143g0350 Nicotiana tabacum HOM05D001780 ORTHO05D004373 3.0e-08 63.2 95 41.1
PGR142G2637 Punica granatum HOM05D001780 ORTHO05D004373 3.0e-08 63.2 102 42.2
Sabra07G0102600 Salix brachista HOM05D001780 ORTHO05D004373 3.0e-08 63.2 101 41.6
Solyc11g012140.2 Solanum lycopersicum HOM05D001780 ORTHO05D004373 3.0e-08 63.2 102 43.1
Aqoxy7G01270 Aquilegia oxysepala HOM05D001780 ORTHO05D004373 4.0e-08 62.8 99 41.4
CsaV3_4G003190 Cucumis sativus L. HOM05D001780 ORTHO05D004373 5.2e-08 62.4 104 39.4
PSO541G0190 Papaver somniferum HOM05D001780 ORTHO05D004373 5.2e-08 62.4 104 37.5
PSO675G8171 Papaver somniferum HOM05D001780 ORTHO05D004373 5.2e-08 62.4 104 37.5
vmacro00605 Vaccinium macrocarpon HOM05D001780 ORTHO05D004373 5.2e-08 62.4 102 43.1
BolC7t45663H Brassica oleracea HOM05D001780 ORTHO05D004373 6.7e-08 62.0 110 40.0
COL.COLO4_09454 Corchorus olitorius HOM05D001780 ORTHO05D004373 6.7e-08 62.0 111 40.5
Migut.D00680 Erythranthe guttata HOM05D001780 ORTHO05D004373 6.7e-08 62.0 98 43.9
HanXRQChr10g0310431 Helianthus annuus HOM05D001780 ORTHO05D004373 6.7e-08 62.0 109 38.5
MBI18_g09771_MAGBIO Magnolia biondii HOM05D001780 ORTHO05D004373 1.1e-07 61.2 95 42.1
SHI29174 Sapria himalayana HOM05D001780 ORTHO05D004373 1.1e-07 61.2 111 40.5
TWI56G0090 Tripterygium wilfordii HOM05D001780 ORTHO05D004373 1.1e-07 61.2 222 31.5
CDE05G1969 Ceratophyllum demersum HOM05D001780 ORTHO05D004373 1.5e-07 60.8 104 36.5
arahy.Tifrunner.gnm1.ann1.NNH8AZ Arachis hypogaea HOM05D001780 ORTHO05D004373 2.6e-07 60.1 96 42.7
RcHm_v2.0_Chr5g0060201 Rosa chinensis HOM05D001780 ORTHO05D004373 2.6e-07 60.1 97 40.2
Dinv33218 Davidia involucrata HOM05D001780 ORTHO05D004373 4.4e-07 59.3 102 37.3
ClCG07G015560 Citrullus lanatus HOM05D001780 ORTHO05D004373 5.7e-07 58.9 130 32.3
Lsat_1_v5_gn_5_76141 Lactuca sativa HOM05D001780 ORTHO05D004373 9.7e-07 58.2 134 30.6
Hund03144 Selenicereus undatus HOM05D001780 ORTHO05D004373 1.3e-06 57.8 97 39.2
Sc20g0004730 Simmondsia chinensis HOM05D001780 ORTHO05D004373 1.3e-06 57.8 100 38.0
Zm00001eb275200 Zea mays HOM05D001780 ORTHO05D004373 1.7e-06 57.4 113 38.1
Zm00001eb386920 Zea mays HOM05D001780 ORTHO05D004373 1.7e-06 57.4 113 38.9
EL10Ac3g05575 Beta vulgaris HOM05D001780 ORTHO05D004373 2.8e-06 56.6 95 37.9
AUR62002268 Chenopodium quinoa HOM05D001780 ORTHO05D004373 2.8e-06 56.6 95 36.8
Os06g0645400 Oryza sativa ssp. japonica HOM05D001780 ORTHO05D004373 2.8e-06 56.6 94 40.4
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 3.7e-06 56.2 140 30.7


User provided reference genes

Program Settings