Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p45540 Brassica napus HOM05D003159 ORTHO05D003780 4.2e-81 304.7 157 100.0
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 6.1e-32 141.4 118 68.6
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 6.1e-32 141.4 118 68.6
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 6.1e-32 141.4 118 68.6
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 1.4e-31 140.2 118 67.8
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 1.4e-31 140.2 118 67.8
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 2.3e-31 139.4 118 67.8
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 2.3e-31 139.4 118 67.8
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 2.3e-31 139.4 118 67.8
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 2.3e-31 139.4 118 67.8
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 2.3e-31 139.4 118 67.8
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 2.3e-31 139.4 118 67.8
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 3.0e-31 139.0 118 66.1
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 5.2e-31 138.3 118 66.1
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 6.7e-31 137.9 118 66.9
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 9.7e-30 134.0 118 63.6
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 1.3e-29 133.7 118 63.6
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 8.2e-29 131.0 124 61.3
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 8.2e-29 131.0 118 62.7
AT2G05140 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 1.4e-28 130.2 118 62.7
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 5.3e-28 128.3 118 61.9
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 7.0e-28 127.9 118 61.9
BcaC04g20281 Brassica carinata HOM05D003159 ORTHO05D003780 5.0e-26 121.7 77 87.0
BolC9t57426H Brassica oleracea HOM05D003159 ORTHO05D003780 3.2e-25 119.0 63 100.0
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 1.2e-24 117.1 118 55.1
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 3.6e-24 115.5 118 54.2
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 8.0e-24 114.4 103 66.0
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 8.0e-24 114.4 118 55.1
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 1.8e-23 113.2 118 52.5
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 1.8e-23 113.2 118 53.4
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 6.8e-23 111.3 118 51.7
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 6.8e-23 111.3 118 52.5
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 6.8e-23 111.3 118 52.5
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 8.8e-23 110.9 118 50.8
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 1.2e-22 110.5 117 53.0
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 1.2e-22 110.5 118 50.8
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 1.2e-22 110.5 118 50.8
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 1.2e-22 110.5 118 50.8
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 1.2e-22 110.5 117 53.8
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 1.5e-22 110.2 118 50.8
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 2.0e-22 109.8 118 51.7
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 2.6e-22 109.4 118 50.0
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 2.6e-22 109.4 157 40.1
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 3.4e-22 109.0 117 53.8
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 4.4e-22 108.6 118 49.2
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 4.4e-22 108.6 118 51.7
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 4.4e-22 108.6 118 50.0
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 5.7e-22 108.2 118 51.7
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 5.7e-22 108.2 117 52.1
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 5.7e-22 108.2 118 51.7
Oeu054532.1 Olea europaea HOM05D003159 ORTHO05D003780 7.5e-22 107.8 117 53.0
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 9.8e-22 107.5 117 53.0
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 9.8e-22 107.5 117 50.4
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 1.3e-21 107.1 118 50.0
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 1.3e-21 107.1 118 50.0
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 1.3e-21 107.1 119 52.1
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 1.7e-21 106.7 118 48.3
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 1.7e-21 106.7 117 50.4
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.7e-21 106.7 118 49.2
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.7e-21 106.7 118 49.2
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 1.7e-21 106.7 118 49.2
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 1.7e-21 106.7 117 52.1
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 1.7e-21 106.7 117 52.1
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 1.7e-21 106.7 118 50.8
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 1.7e-21 106.7 118 50.8
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 2.2e-21 106.3 118 50.0
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 2.2e-21 106.3 117 50.4
Actinidia06777 Actinidia chinensis HOM05D003159 ORTHO05D003780 2.8e-21 105.9 118 50.8
Cpa.g.sc162.4 Carica papaya HOM05D003159 ORTHO05D003780 2.8e-21 105.9 118 48.3
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 3.7e-21 105.5 117 49.6
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 4.8e-21 105.1 118 47.5
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 6.3e-21 104.8 118 48.3
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 6.3e-21 104.8 117 51.3
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 8.3e-21 104.4 118 49.2
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.1e-20 104.0 118 49.2
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 1.4e-20 103.6 117 50.4
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 1.4e-20 103.6 117 51.3
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 1.4e-20 103.6 118 50.8
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 1.8e-20 103.2 117 47.9
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.8e-20 103.2 118 47.5
Lsat_1_v5_gn_9_121981 Lactuca sativa HOM05D003159 ORTHO05D003780 1.8e-20 103.2 118 50.8
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 2.4e-20 102.8 117 48.7
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 2.4e-20 102.8 118 47.5
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 2.4e-20 102.8 124 47.6
DCAR_028953 Daucus carota HOM05D003159 ORTHO05D003780 2.4e-20 102.8 118 50.0
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 3.1e-20 102.4 118 47.5
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.1e-20 102.4 118 47.5
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 4.1e-20 102.1 117 50.4
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 5.4e-20 101.7 118 47.5
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 9.1e-20 100.9 118 51.7
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 1.2e-19 100.5 118 47.5
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 1.2e-19 100.5 118 47.5
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 1.2e-19 100.5 118 49.2
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 1.2e-19 100.5 118 50.0
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 1.2e-19 100.5 117 48.7
BcaB02g09259 Brassica carinata HOM05D003159 ORTHO05D003780 1.6e-19 100.1 83 66.3
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 2.0e-19 99.8 117 49.6
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 2.7e-19 99.4 126 47.6
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 3.5e-19 99.0 113 50.4
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 3.5e-19 99.0 117 47.9
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 4.5e-19 98.6 113 49.6
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 5.9e-19 98.2 141 43.3
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 5.9e-19 98.2 118 47.5
Sabra19G0025000 Salix brachista HOM05D003159 ORTHO05D003780 5.9e-19 98.2 118 47.5
CDE05G0407 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 1.7e-18 96.7 117 47.0
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 2.9e-18 95.9 117 47.9
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 1.1e-17 94.0 111 50.5
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 1.9e-17 93.2 117 47.9
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 2.5e-17 92.8 117 47.0
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 7.2e-17 91.3 120 42.5
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 1.2e-16 90.5 121 44.6
Sabra19G0025100 Salix brachista HOM05D003159 ORTHO05D003780 1.2e-16 90.5 112 47.3
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 1.6e-16 90.1 116 44.0
Sabra19G0025200 Salix brachista HOM05D003159 ORTHO05D003780 1.6e-16 90.1 125 43.2
PSO782G2231 Papaver somniferum HOM05D003159 ORTHO05D003780 2.1e-16 89.7 121 44.6
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 2.1e-16 89.7 117 44.4
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 2.8e-16 89.4 117 46.2
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 3.6e-16 89.0 117 43.6
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 4.7e-16 88.6 117 42.7
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 6.1e-16 88.2 117 46.2
Sabra19G0025600 Salix brachista HOM05D003159 ORTHO05D003780 6.1e-16 88.2 125 42.4
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 1.4e-15 87.0 121 42.1
Sabra19G0025400 Salix brachista HOM05D003159 ORTHO05D003780 1.4e-15 87.0 86 51.2
Sabra19G0025900 Salix brachista HOM05D003159 ORTHO05D003780 3.0e-15 85.9 75 57.3
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 6.8e-15 84.7 163 36.8
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 6.8e-15 84.7 117 45.3
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 1.2e-14 84.0 86 52.3
SHI06090 Sapria himalayana HOM05D003159 ORTHO05D003780 1.2e-14 84.0 115 45.2
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 1.5e-14 83.6 94 51.1
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 1.5e-14 83.6 92 51.1
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 1.3e-13 80.5 93 50.5
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 1.7e-13 80.1 117 42.7
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 2.8e-13 79.3 112 46.4
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 8.3e-13 77.8 116 39.7
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 1.4e-12 77.0 131 38.2
QL03p028499 Quercus lobata HOM05D003159 ORTHO05D003780 2.4e-12 76.3 84 47.6
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 4.1e-12 75.5 92 47.8
Gorai.007G279200 Gossypium raimondii HOM05D003159 ORTHO05D003780 5.4e-12 75.1 65 53.8
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 5.4e-12 75.1 126 42.9
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 1.2e-11 73.9 115 38.3
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 3.5e-11 72.4 117 40.2
Cc06_g22420 Coffea canephora HOM05D003159 ORTHO05D003780 5.9e-11 71.6 61 57.4
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 1.7e-10 70.1 155 32.3
FAN02G2337 Fragaria x ananassa HOM05D003159 ORTHO05D003780 5.6e-09 65.1 133 36.8
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 9.5e-09 64.3 85 43.5
FvH4_6g42830 Fragaria vesca HOM05D003159 ORTHO05D003780 8.0e-08 61.2 114 38.6
FAN09G3766 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.8e-07 60.1 128 36.7
Sed0012102 Sechium edule HOM05D003159 ORTHO05D003780 1.2e-06 57.4 117 35.9
TAR362G0177 Trochodendron aralioides HOM05D003159 ORTHO05D003780 1.2e-06 57.4 57 54.4
FAN14G5085 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.6e-06 56.2 134 35.1


User provided reference genes

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