Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p45190 Brassica napus HOM05D001196 ORTHO05D027291 1.2e-58 229.6 111 100.0
BolC9t57394H Brassica oleracea HOM05D001196 ORTHO05D027291 1.7e-57 225.7 111 98.2
BcaC04g20303 Brassica carinata HOM05D043248 ORTHO05D027291 5.1e-41 171.0 88 95.5
Thhalv10013605m.g Eutrema salsugineum HOM05D001196 ORTHO05D001673 7.6e-21 104.0 103 58.3
BcaC01g06326 Brassica carinata HOM05D001196 ORTHO05D001673 1.0e-20 103.6 103 58.3
A03p14420 Brassica napus HOM05D001196 ORTHO05D001673 1.0e-20 103.6 103 58.3
C03p16790 Brassica napus HOM05D001196 ORTHO05D001673 1.0e-20 103.6 103 58.3
BolC3t14099H Brassica oleracea HOM05D001196 ORTHO05D001673 1.0e-20 103.6 103 58.3
BraA03t10738Z Brassica rapa HOM05D001196 ORTHO05D001673 1.0e-20 103.6 103 58.3
Sp6g16720 Schrenkiella parvula HOM05D001196 ORTHO05D001673 1.3e-20 103.2 103 58.3
AT5G54780 Arabidopsis thaliana HOM05D001196 ORTHO05D001673 4.9e-20 101.3 103 56.3
BcaC03g14289 Brassica carinata HOM05D001196 ORTHO05D001673 4.9e-20 101.3 103 56.3
A02p10040 Brassica napus HOM05D001196 ORTHO05D001673 4.9e-20 101.3 103 56.3
C02p16690 Brassica napus HOM05D001196 ORTHO05D001673 4.9e-20 101.3 103 56.3
BolC2t07775H Brassica oleracea HOM05D001196 ORTHO05D001673 4.9e-20 101.3 103 56.3
BraA02t06073Z Brassica rapa HOM05D001196 ORTHO05D001673 4.9e-20 101.3 103 56.3
AL8G30210 Arabidopsis lyrata HOM05D001196 ORTHO05D001673 6.5e-20 100.9 103 56.3
BcaB05g22157 Brassica carinata HOM05D001196 ORTHO05D001673 6.5e-20 100.9 103 56.3
Carub.0008s1505 Capsella rubella HOM05D001196 ORTHO05D001673 6.5e-20 100.9 103 56.3
CARHR268110 Cardamine hirsuta HOM05D001196 ORTHO05D001673 2.5e-19 99.0 103 56.3
THA.LOC104817651 Tarenaya hassleriana HOM05D001196 ORTHO05D001673 1.8e-14 82.8 103 49.5
Aa31LG3G10710 Aethionema arabicum HOM05D001196 ORTHO05D001673 4.1e-14 81.6 104 51.9
THA.LOC104812528 Tarenaya hassleriana HOM05D001196 ORTHO05D001673 9.0e-14 80.5 103 47.6
EL10Ac4g07938 Beta vulgaris HOM05D001196 ORTHO05D001673 7.6e-13 77.4 103 47.6
AUR62020533 Chenopodium quinoa HOM05D001196 ORTHO05D001673 1.0e-12 77.0 103 48.5
Gohir.A08G020000 Gossypium hirsutum HOM05D001196 ORTHO05D001673 2.2e-12 75.9 98 45.9
Gohir.D08G030600 Gossypium hirsutum HOM05D001196 ORTHO05D001673 2.2e-12 75.9 98 45.9
Gorai.004G028200 Gossypium raimondii HOM05D001196 ORTHO05D001673 2.2e-12 75.9 98 45.9
CANSAT35G0672 Cannabis sativa HOM05D001196 ORTHO05D001673 3.8e-12 75.1 99 46.5
Dinv40724 Davidia involucrata HOM05D001196 ORTHO05D001673 5.0e-12 74.7 99 47.5
Eucgr.F00973 Eucalyptus grandis HOM05D001196 ORTHO05D001673 6.5e-12 74.3 99 49.5
Peaxi162Scf00450g00866 Petunia axillaris HOM05D001196 ORTHO05D001673 6.5e-12 74.3 98 45.9
Sc07g0002750 Simmondsia chinensis HOM05D001196 ORTHO05D001673 6.5e-12 74.3 103 45.6
vmacro09742 Vaccinium macrocarpon HOM05D001196 ORTHO05D001673 6.5e-12 74.3 99 47.5
Hma1.2p1_1344F.1_g277080 Hydrangea macrophylla HOM05D001196 ORTHO05D001673 8.5e-12 73.9 99 46.5
AL7G25700 Arabidopsis lyrata HOM05D001196 ORTHO05D001673 1.4e-11 73.2 103 47.6
BcaC04g19369 Brassica carinata HOM05D001196 ORTHO05D001673 1.4e-11 73.2 99 48.5
C05p31780 Brassica napus HOM05D001196 ORTHO05D001673 1.4e-11 73.2 99 48.5
C09p56460 Brassica napus HOM05D001196 ORTHO05D001673 1.4e-11 73.2 99 48.5
AT4G27100 Arabidopsis thaliana HOM05D001196 ORTHO05D001673 1.9e-11 72.8 103 46.6
Dinv22293 Davidia involucrata HOM05D001196 ORTHO05D001673 1.9e-11 72.8 99 47.5
Sabra11G0121100 Salix brachista HOM05D001196 ORTHO05D001673 1.9e-11 72.8 113 42.5
Carub.0007s1374 Capsella rubella HOM05D001196 ORTHO05D001673 2.5e-11 72.4 103 47.6
CAN.G337.97 Capsicum annuum HOM05D001196 ORTHO05D001673 2.5e-11 72.4 98 43.9
Thecc.07G050400 Theobroma cacao HOM05D001196 ORTHO05D001673 2.5e-11 72.4 99 47.5
PGR083G1705 Punica granatum HOM05D001196 ORTHO05D001673 3.2e-11 72.0 99 45.5
TAR626G1812 Trochodendron aralioides HOM05D001196 ORTHO05D001673 3.2e-11 72.0 99 46.5
Aa31LG5G10310 Aethionema arabicum HOM05D001196 ORTHO05D001673 4.2e-11 71.6 100 49.0
BcaC09g50617 Brassica carinata HOM05D001196 ORTHO05D001673 4.2e-11 71.6 104 46.2
A01p18240 Brassica napus HOM05D001196 ORTHO05D001673 4.2e-11 71.6 104 46.2
C01p23240 Brassica napus HOM05D001196 ORTHO05D001673 4.2e-11 71.6 104 46.2
BolC1t02257H Brassica oleracea HOM05D001196 ORTHO05D001673 4.2e-11 71.6 104 46.2
BraA01t01779Z Brassica rapa HOM05D001196 ORTHO05D001673 4.2e-11 71.6 104 46.2
Eucgr.F03436 Eucalyptus grandis HOM05D001196 ORTHO05D001673 4.2e-11 71.6 99 45.5
Lj8A166T92 Lonicera japonica HOM05D001196 ORTHO05D001673 4.2e-11 71.6 98 45.9
Cc05_g13350 Coffea canephora HOM05D001196 ORTHO05D001673 5.5e-11 71.2 98 46.9
MD11G1224500 Malus domestica HOM05D001196 ORTHO05D001673 5.5e-11 71.2 98 46.9
Prupe.4G205400 Prunus persica HOM05D001196 ORTHO05D001673 5.5e-11 71.2 99 46.5
PGR031G0615 Punica granatum HOM05D001196 ORTHO05D001673 5.5e-11 71.2 99 46.5
QL08p012860 Quercus lobata HOM05D001196 ORTHO05D001673 7.2e-11 70.9 98 46.9
RhsimUnG0252500 Rhododendron simsii HOM05D001196 ORTHO05D001673 7.2e-11 70.9 99 45.5
Sabra16G0284600 Salix brachista HOM05D001196 ORTHO05D001673 7.2e-11 70.9 99 44.4
Solyc07g064230.4 Solanum lycopersicum HOM05D001196 ORTHO05D001673 7.2e-11 70.9 98 43.9
Sopen07g032380 Solanum pennellii HOM05D001196 ORTHO05D001673 7.2e-11 70.9 98 43.9
PGSC0003DMG400001042 Solanum tuberosum HOM05D001196 ORTHO05D001673 7.2e-11 70.9 98 43.9
Nitab4.5_0001479g0080 Nicotiana tabacum HOM05D001196 ORTHO05D001673 9.4e-11 70.5 98 42.9
CARHR234750 Cardamine hirsuta HOM05D001196 ORTHO05D001673 1.2e-10 70.1 103 46.6
CiPaw.12G127200 Carya illinoinensis HOM05D001196 ORTHO05D001673 1.2e-10 70.1 99 46.5
COL.COLO4_09589 Corchorus olitorius HOM05D001196 ORTHO05D001673 1.2e-10 70.1 99 45.5
Potri.001G419100 Populus trichocarpa HOM05D001196 ORTHO05D001673 1.2e-10 70.1 99 43.4
Potri.011G135300 Populus trichocarpa HOM05D001196 ORTHO05D001673 1.2e-10 70.1 99 44.4
Sp7g25070 Schrenkiella parvula HOM05D001196 ORTHO05D001673 1.2e-10 70.1 99 47.5
Hund23296 Selenicereus undatus HOM05D001196 ORTHO05D001673 1.2e-10 70.1 116 41.4
TAR624G0789 Trochodendron aralioides HOM05D001196 ORTHO05D001673 1.2e-10 70.1 99 45.5
GSVIVG01001980001 Vitis vinifera HOM05D001196 ORTHO05D001673 1.2e-10 70.1 99 45.5
Atru.chr2.3234 Acer truncatum HOM05D001196 ORTHO05D001673 1.6e-10 69.7 98 45.9
BcaNung03060 Brassica carinata HOM05D001196 ORTHO05D001673 1.6e-10 69.7 104 45.2
CiPaw.11G185100 Carya illinoinensis HOM05D001196 ORTHO05D001673 1.6e-10 69.7 99 45.5
Sed0014037 Sechium edule HOM05D001196 ORTHO05D001673 1.6e-10 69.7 99 45.5
TWI39G1309 Tripterygium wilfordii HOM05D001196 ORTHO05D001673 1.6e-10 69.7 99 46.5
BcaB01g04324 Brassica carinata HOM05D001196 ORTHO05D001673 2.1e-10 69.3 53 67.9
Duzib170G0868 Durio zibethinus HOM05D001196 ORTHO05D001673 2.1e-10 69.3 98 45.9
Duzib213G0104 Durio zibethinus HOM05D001196 ORTHO05D001673 2.1e-10 69.3 100 45.0
MELO3C025406.2 Cucumis melo HOM05D001196 ORTHO05D001673 2.7e-10 68.9 99 46.5
Sed0015782 Sechium edule HOM05D001196 ORTHO05D001673 2.7e-10 68.9 99 45.5
TWI38G2411 Tripterygium wilfordii HOM05D001196 ORTHO05D001673 3.6e-10 68.6 99 43.4
MSTRG.14422 Avicennia marina HOM05D001196 ORTHO05D001673 4.6e-10 68.2 102 43.1
MSTRG.6896 Avicennia marina HOM05D001196 ORTHO05D001673 4.6e-10 68.2 98 43.9
Lj3g0007348 Lotus japonicus HOM05D001196 ORTHO05D001673 4.6e-10 68.2 99 46.5
QL08p012720 Quercus lobata HOM05D001196 ORTHO05D001673 4.6e-10 68.2 98 45.9
BcaC03g17588 Brassica carinata HOM05D001196 ORTHO05D001673 6.1e-10 67.8 99 45.5
CSS0000247 Camellia sinensis var. sinensis HOM05D001196 ORTHO05D001673 6.1e-10 67.8 99 44.4
CsaV3_3G005320 Cucumis sativus L. HOM05D001196 ORTHO05D001673 6.1e-10 67.8 99 46.5
vmacro11758 Vaccinium macrocarpon HOM05D001196 ORTHO05D001673 6.1e-10 67.8 98 45.9
Nn1g07060 Nelumbo nucifera HOM05D001196 ORTHO05D001673 7.9e-10 67.4 99 43.4
Sc03g0008870 Simmondsia chinensis HOM05D001196 ORTHO05D001673 7.9e-10 67.4 98 44.9
Nitab4.5_0000397g0250 Nicotiana tabacum HOM05D001196 ORTHO05D001673 1.0e-09 67.0 129 37.2
Nitab4.5_0000092g0050 Nicotiana tabacum HOM05D001196 ORTHO05D001673 1.4e-09 66.6 104 41.3
Thhalv10025248m.g Eutrema salsugineum HOM05D001196 ORTHO05D001673 1.8e-09 66.2 103 45.6
Lj1C867T7 Lonicera japonica HOM05D001196 ORTHO05D001673 1.8e-09 66.2 99 42.4
Actinidia35326 Actinidia chinensis HOM05D003131 ORTHO05D003761 3.0e-09 65.5 99 43.4
Actinidia09925 Actinidia chinensis HOM05D001196 ORTHO05D001673 3.9e-09 65.1 98 45.9
Lalb_Chr14g0366211 Lupinus albus HOM05D001196 ORTHO05D001673 3.9e-09 65.1 99 45.5
Peaxi162Scf00000g00843 Petunia axillaris HOM05D000092 ORTHO05D001673 3.9e-09 65.1 104 41.3
Solyc12g005220.2 Solanum lycopersicum HOM05D001196 ORTHO05D001673 3.9e-09 65.1 119 38.7
MD03G1209800 Malus domestica HOM05D001196 ORTHO05D001673 5.1e-09 64.7 98 42.9
Duzib268G0677 Durio zibethinus HOM05D001196 ORTHO05D001673 6.7e-09 64.3 99 43.4
Psat5g252080 Pisum sativum HOM05D001196 ORTHO05D001673 1.1e-08 63.5 99 42.4
Glyma.12G213300 Glycine max HOM05D001196 ORTHO05D001673 1.5e-08 63.2 99 42.4
Gohir.A01G075900 Gossypium hirsutum HOM05D001196 ORTHO05D001673 1.5e-08 63.2 93 45.2
Gorai.002G083900 Gossypium raimondii HOM05D001196 ORTHO05D001673 1.5e-08 63.2 93 45.2
Hund02120 Selenicereus undatus HOM05D001196 ORTHO05D001673 1.5e-08 63.2 103 41.7
CDE05G1690 Ceratophyllum demersum HOM05D001196 ORTHO05D001673 1.9e-08 62.8 97 42.3
Sopen12g001200 Solanum pennellii HOM05D001196 ORTHO05D001673 1.9e-08 62.8 119 37.8
Ca_01738_v3 Cicer arietinum L. HOM05D001196 ORTHO05D001673 2.5e-08 62.4 99 42.4
Migut.M01797 Erythranthe guttata HOM05D001196 ORTHO05D001673 2.5e-08 62.4 98 42.9
Oeu007635.2 Olea europaea HOM05D001196 ORTHO05D001673 2.5e-08 62.4 98 40.8
PGSC0003DMG400025622 Solanum tuberosum HOM05D001196 ORTHO05D001673 2.5e-08 62.4 119 37.8
Gohir.A11G279100 Gossypium hirsutum HOM05D001196 ORTHO05D001673 3.3e-08 62.0 81 45.7
HPP92_001784 Vanilla planifolia HOM05D001196 ORTHO05D001673 3.3e-08 62.0 98 42.9
CSS0038168 Camellia sinensis var. sinensis HOM05D001196 ORTHO05D001673 4.3e-08 61.6 102 41.2
FvH4_3g21970 Fragaria vesca HOM05D001196 ORTHO05D001673 4.3e-08 61.6 87 42.5
FAN21G0397 Fragaria x ananassa HOM05D001196 ORTHO05D001673 4.3e-08 61.6 87 42.5
FAN25G2728 Fragaria x ananassa HOM05D001196 ORTHO05D001673 4.3e-08 61.6 87 42.5
Gohir.D01G063200 Gossypium hirsutum HOM05D001196 ORTHO05D001673 5.7e-08 61.2 93 44.1
MBI02_g23960_MAGBIO Magnolia biondii HOM05D001196 ORTHO05D001673 5.7e-08 61.2 98 41.8
Medtr2g083220 Medicago truncatula HOM05D001196 ORTHO05D001673 5.7e-08 61.2 99 41.4
Aqoxy4G01974 Aquilegia oxysepala HOM05D001196 ORTHO05D001673 7.4e-08 60.8 98 43.9
Manes.03G123918 Manihot esculenta HOM05D001196 ORTHO05D001673 7.4e-08 60.8 99 41.4
Glyma.13G288400 Glycine max HOM05D001196 ORTHO05D001673 9.7e-08 60.5 99 41.4
Gohir.D11G290000 Gossypium hirsutum HOM05D001196 ORTHO05D001673 9.7e-08 60.5 81 44.4
Gorai.007G313900 Gossypium raimondii HOM05D001196 ORTHO05D001673 9.7e-08 60.5 81 44.4
unitig_26.g9965 Utricularia gibba HOM05D001196 ORTHO05D001673 9.7e-08 60.5 103 39.8
CAN.G1781.15 Capsicum annuum HOM05D001196 ORTHO05D001673 1.7e-07 59.7 98 42.9
Ciclev10008337m.g Citrus clementina HOM05D001196 ORTHO05D001673 1.7e-07 59.7 99 40.4
DCAR_022533 Daucus carota HOM05D001196 ORTHO05D001673 2.2e-07 59.3 99 41.4
Lsat_1_v5_gn_4_185761 Lactuca sativa HOM05D001196 ORTHO05D001673 2.8e-07 58.9 97 38.1
Lsat_1_v5_gn_4_185780 Lactuca sativa HOM05D001196 ORTHO05D001673 2.8e-07 58.9 97 38.1
Lalb_Chr03g0030101 Lupinus albus HOM05D001196 ORTHO05D001673 2.8e-07 58.9 99 42.4
arahy.Tifrunner.gnm1.ann1.LR1R6N Arachis hypogaea HOM05D001196 ORTHO05D001673 3.7e-07 58.5 99 40.4
arahy.Tifrunner.gnm1.ann1.W1GN2M Arachis hypogaea HOM05D001196 ORTHO05D001673 3.7e-07 58.5 99 40.4
ECA240G2714 Erigeron canadensis HOM05D001196 ORTHO05D001673 3.7e-07 58.5 99 39.4
HanXRQChr13g0407681 Helianthus annuus HOM05D001196 ORTHO05D001673 3.7e-07 58.5 99 40.4
PSO210G1308 Papaver somniferum HOM05D001196 ORTHO05D001673 3.7e-07 58.5 95 40.0
PSO832G1595 Papaver somniferum HOM05D001196 ORTHO05D001673 3.7e-07 58.5 95 40.0
Peaxi162Scf00407g00017 Petunia axillaris HOM05D001196 ORTHO05D001673 3.7e-07 58.5 98 40.8
VMungo1127G0550 Vigna mungo HOM05D001196 ORTHO05D001673 3.7e-07 58.5 93 38.7
Migut.H01849 Erythranthe guttata HOM05D001196 ORTHO05D001673 4.8e-07 58.2 98 39.8
Lalb_Chr01g0006091 Lupinus albus HOM05D001196 ORTHO05D001673 4.8e-07 58.2 99 42.4
Lj3g0018788 Lotus japonicus HOM05D001196 ORTHO05D001673 6.3e-07 57.8 99 41.4
Peaxi162Scf00407g00211 Petunia axillaris HOM05D001196 ORTHO05D001673 6.3e-07 57.8 98 40.8
Gohir.D05G365800 Gossypium hirsutum HOM05D001196 ORTHO05D001673 8.2e-07 57.4 91 40.7
Gorai.009G426300 Gossypium raimondii HOM05D001196 ORTHO05D001673 8.2e-07 57.4 91 40.7
RcHm_v2.0_Chr5g0037821 Rosa chinensis HOM05D001196 ORTHO05D001673 8.2e-07 57.4 80 43.8
Solyc10g006440.3 Solanum lycopersicum HOM05D001196 ORTHO05D001673 1.1e-06 57.0 98 40.8
Sopen10g002390 Solanum pennellii HOM05D001196 ORTHO05D001673 1.1e-06 57.0 98 40.8
VMungo1080G0337 Vigna mungo HOM05D001196 ORTHO05D001673 1.1e-06 57.0 99 39.4
Lsat_1_v5_gn_0_6780 Lactuca sativa HOM05D001196 ORTHO05D001673 1.4e-06 56.6 90 37.8
Phvul.011G139200 Phaseolus vulgaris HOM05D001196 ORTHO05D001673 1.4e-06 56.6 93 37.6
Gohir.A04G020900 Gossypium hirsutum HOM05D001196 ORTHO05D001673 1.8e-06 56.2 91 39.6
ATR0697G130 Amborella trichopoda HOM05D001196 ORTHO05D001673 2.4e-06 55.8 87 41.4
SHI31833 Sapria himalayana HOM05D001196 ORTHO05D001673 2.4e-06 55.8 93 37.6
PGSC0003DMG400014398 Solanum tuberosum HOM05D001196 ORTHO05D001673 2.4e-06 55.8 98 39.8
Aqoxy2G01847 Aquilegia oxysepala HOM05D001196 ORTHO05D001673 3.1e-06 55.5 92 42.4
Glyma.12G134900 Glycine max HOM05D001196 ORTHO05D001673 3.1e-06 55.5 99 40.4
Phvul.005G092600 Phaseolus vulgaris HOM05D001196 ORTHO05D001673 4.1e-06 55.1 99 39.4
BcaB08g35843 Brassica carinata HOM05D001196 ORTHO05D001673 5.3e-06 54.7 30 80.0
HanXRQChr03g0077321 Helianthus annuus HOM05D001196 ORTHO05D001673 5.3e-06 54.7 115 35.7
Ca_18856_v3 Cicer arietinum L. HOM05D001196 ORTHO05D001673 6.9e-06 54.3 99 38.4
Psat7g162640 Pisum sativum HOM05D001196 ORTHO05D001673 9.1e-06 53.9 99 38.4


User provided reference genes

Program Settings