Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20479 Brassica carinata HOM05D001384 ORTHO05D001215 3.2e-19 97.8 64 100.0
C09p43060 Brassica napus HOM05D001384 ORTHO05D001215 3.2e-19 97.8 64 100.0
BolC9t57176H Brassica oleracea HOM05D001384 ORTHO05D001215 3.2e-19 97.8 64 100.0
BcaB05g22027 Brassica carinata HOM05D001384 ORTHO05D001215 1.2e-18 95.9 64 98.4
BcaC03g14439 Brassica carinata HOM05D001384 ORTHO05D001215 1.2e-18 95.9 64 84.4
A02p11180 Brassica napus HOM05D001384 ORTHO05D001215 1.2e-18 95.9 64 98.4
A10p10780 Brassica napus HOM05D001384 ORTHO05D001215 1.2e-18 95.9 64 98.4
C02p18530 Brassica napus HOM05D001384 ORTHO05D001215 1.2e-18 95.9 64 84.4
BolC2t07993H Brassica oleracea HOM05D001384 ORTHO05D001215 1.2e-18 95.9 64 84.4
BraA02t06181Z Brassica rapa HOM05D001384 ORTHO05D001215 1.2e-18 95.9 64 98.4
BraA10t43159Z Brassica rapa HOM05D001384 ORTHO05D001215 1.2e-18 95.9 64 98.4
AL8G27900 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 1.6e-18 95.5 64 82.8
BcaC01g06232 Brassica carinata HOM05D001384 ORTHO05D001215 3.5e-18 94.4 64 85.9
BcaC01g06233 Brassica carinata HOM05D001384 ORTHO05D001215 3.5e-18 94.4 64 85.9
BolC3t14192H Brassica oleracea HOM05D001384 ORTHO05D001215 3.5e-18 94.4 64 85.9
BcaB08g35687 Brassica carinata HOM05D001384 ORTHO05D001215 4.6e-18 94.0 64 95.3
A03p15270 Brassica napus HOM05D001384 ORTHO05D001215 5.9e-18 93.6 64 92.2
Carub.0008s1343 Capsella rubella HOM05D001384 ORTHO05D001215 1.0e-17 92.8 64 79.7
Thhalv10015233m.g Eutrema salsugineum HOM05D001384 ORTHO05D001215 1.0e-17 92.8 64 79.7
Sp6g15410 Schrenkiella parvula HOM05D001384 ORTHO05D001215 1.0e-17 92.8 64 89.1
BraA03t10820Z Brassica rapa HOM05D001384 ORTHO05D001215 1.3e-17 92.4 64 92.2
AT5G53250 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 3.0e-17 91.3 64 79.7
CARHR266300 Cardamine hirsuta HOM05D001384 ORTHO05D001215 3.9e-17 90.9 64 93.8
Aa31LG3G9260 Aethionema arabicum HOM05D001384 ORTHO05D001215 4.0e-14 80.9 66 71.2
BcaB01g04237 Brassica carinata HOM05D001384 ORTHO05D001215 1.1e-11 72.8 61 82.0
MELO3C032818.2 Cucumis melo HOM05D001384 ORTHO05D001215 5.0e-09 63.9 63 55.6
Manes.06G156900 Manihot esculenta HOM05D001384 ORTHO05D001215 1.1e-08 62.8 64 50.0
THA.LOC109117149 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 1.1e-08 62.8 66 54.5
CsaV3_4G006390 Cucumis sativus L. HOM05D001384 ORTHO05D001215 3.3e-08 61.2 63 54.0
THA.LOC109116865 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 5.6e-08 60.5 64 51.6
TAR375G0324 Trochodendron aralioides HOM05D001384 ORTHO05D001215 5.6e-08 60.5 63 50.8
QL02p031550 Quercus lobata HOM05D001384 ORTHO05D001215 1.6e-07 58.9 63 50.8
PGR142G3584 Punica granatum HOM05D001384 ORTHO05D001215 2.1e-07 58.5 55 65.5
AT5G24105 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 2.8e-07 58.2 55 56.4
BcaC04g23523 Brassica carinata HOM05D001384 ORTHO05D001215 2.8e-07 58.2 55 52.7
A09p06620 Brassica napus HOM05D001384 ORTHO05D001215 2.8e-07 58.2 55 52.7
C09p07390 Brassica napus HOM05D001384 ORTHO05D001215 2.8e-07 58.2 55 52.7
BolC9t53653H Brassica oleracea HOM05D001384 ORTHO05D001215 2.8e-07 58.2 55 52.7
BraA09t36309Z Brassica rapa HOM05D001384 ORTHO05D001215 2.8e-07 58.2 55 52.7
Carub.0006s2183 Capsella rubella HOM05D001384 ORTHO05D001215 2.8e-07 58.2 55 54.5
CARHR189480 Cardamine hirsuta HOM05D001384 ORTHO05D001215 3.6e-07 57.8 55 65.5
HanXRQChr10g0319041 Helianthus annuus HOM05D001384 ORTHO05D001215 3.6e-07 57.8 55 56.4
THA.LOC104821373 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 3.6e-07 57.8 60 51.7
TWI39G0811 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 4.7e-07 57.4 64 57.8
Dinv37556 Davidia involucrata HOM05D001384 ORTHO05D001215 6.2e-07 57.0 63 47.6
FvH4_7g30990 Fragaria vesca HOM05D001384 ORTHO05D001215 6.2e-07 57.0 55 49.1
Nitab4.5_0000522g0080 Nicotiana tabacum HOM05D001384 ORTHO05D001215 6.2e-07 57.0 54 51.9
Prupe.2G306800 Prunus persica HOM05D001384 ORTHO05D001215 6.2e-07 57.0 55 50.9
Sed0020989 Sechium edule HOM05D001384 ORTHO05D001215 6.2e-07 57.0 50 60.0
ClCG07G014860 Citrullus lanatus HOM05D001384 ORTHO05D001215 8.1e-07 56.6 63 50.8
HPP92_026774 Vanilla planifolia HOM05D001384 ORTHO05D001215 8.1e-07 56.6 54 64.8
AL6G35460 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 1.1e-06 56.2 64 62.5
CiPaw.11G124600 Carya illinoinensis HOM05D001384 ORTHO05D001215 1.1e-06 56.2 54 55.6
Duzib205G1630 Durio zibethinus HOM05D001384 ORTHO05D001215 1.1e-06 56.2 66 63.6
GSVIVG01028741001 Vitis vinifera HOM05D001384 ORTHO05D001215 1.1e-06 56.2 63 46.0
Solyc10g011730.3 Solanum lycopersicum HOM05D001384 ORTHO05D001215 1.4e-06 55.8 53 50.9
Sopen10g005520 Solanum pennellii HOM05D001384 ORTHO05D001215 1.4e-06 55.8 53 50.9
Thecc.01G347500 Theobroma cacao HOM05D001384 ORTHO05D001215 1.4e-06 55.8 54 50.0
PGR042G2194 Punica granatum HOM05D001384 ORTHO05D001215 1.8e-06 55.5 52 61.5
Thecc.09G095500 Theobroma cacao HOM05D001384 ORTHO05D001215 1.8e-06 55.5 64 43.8
Thecc.03G192400 Theobroma cacao HOM05D001384 ORTHO05D001215 2.3e-06 55.1 64 45.3
TWI15G0052 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 2.3e-06 55.1 63 60.3
C03p17850 Brassica napus HOM05D001384 ORTHO05D001215 3.1e-06 54.7 41 75.6
COL.COLO4_06332 Corchorus olitorius HOM05D001384 ORTHO05D001215 3.1e-06 54.7 63 44.4
Gohir.A11G094700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 3.1e-06 54.7 61 59.0
Lsat_1_v5_gn_6_11901 Lactuca sativa HOM05D001384 ORTHO05D001215 3.1e-06 54.7 64 46.9
Manes.14G018800 Manihot esculenta HOM05D001384 ORTHO05D001215 3.1e-06 54.7 66 48.5
Potri.014G094800 Populus trichocarpa HOM05D001384 ORTHO05D001215 3.1e-06 54.7 62 58.1
Cpa.g.sc3.48 Carica papaya HOM05D001384 ORTHO05D001215 4.0e-06 54.3 65 44.6
FAN06G1205 Fragaria x ananassa HOM05D001384 ORTHO05D001215 4.0e-06 54.3 57 47.4
Gohir.A10G199650 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.0e-06 54.3 61 44.3
Gohir.D11G099700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.0e-06 54.3 61 44.3
Gorai.007G105900 Gossypium raimondii HOM05D001384 ORTHO05D001215 4.0e-06 54.3 61 44.3
Peaxi162Scf00099g01816 Petunia axillaris HOM05D001384 ORTHO05D001215 4.0e-06 54.3 53 49.1
Dinv43894 Davidia involucrata HOM05D001384 ORTHO05D001215 5.2e-06 53.9 56 50.0
Glyma.11G018900 Glycine max HOM05D001384 ORTHO05D001215 5.2e-06 53.9 62 53.2
PGSC0003DMG400019380 Solanum tuberosum HOM05D001384 ORTHO05D001215 5.2e-06 53.9 53 49.1
TAR636G2986 Trochodendron aralioides HOM05D001384 ORTHO05D001215 5.2e-06 53.9 54 66.7
AT3G61640 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 6.8e-06 53.5 54 48.1
A06p34940 Brassica napus HOM05D001384 ORTHO05D001215 6.8e-06 53.5 54 51.9
C07p43610 Brassica napus HOM05D001384 ORTHO05D001215 6.8e-06 53.5 54 51.9
BolC7t44888H Brassica oleracea HOM05D001384 ORTHO05D001215 6.8e-06 53.5 54 51.9
Carub.0005s2833 Capsella rubella HOM05D001384 ORTHO05D001215 6.8e-06 53.5 61 45.9
Nitab4.5_0008261g0010 Nicotiana tabacum HOM05D001384 ORTHO05D001215 6.8e-06 53.5 54 46.3
Sed0009789 Sechium edule HOM05D001384 ORTHO05D001215 6.8e-06 53.5 53 49.1
vmacro13148 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 6.8e-06 53.5 54 51.9
Actinidia28493 Actinidia chinensis HOM05D001384 ORTHO05D001215 8.9e-06 53.1 54 48.1
BraA06t26418Z Brassica rapa HOM05D001384 ORTHO05D001215 8.9e-06 53.1 55 50.9
DCAR_006964 Daucus carota HOM05D001384 ORTHO05D001215 8.9e-06 53.1 54 50.0
FAN06G2829 Fragaria x ananassa HOM05D001384 ORTHO05D001215 8.9e-06 53.1 57 47.4
Phvul.002G162600 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 8.9e-06 53.1 61 52.5
Potri.003G136600 Populus trichocarpa HOM05D001384 ORTHO05D001215 8.9e-06 53.1 63 61.9
Sed0001168 Sechium edule HOM05D001384 ORTHO05D001215 8.9e-06 53.1 50 64.0


User provided reference genes

Program Settings