Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p43050 Brassica napus HOM05D014803 ORTHO05D017502 2.8e-157 558.5 279 100.0
BolC9t57175H Brassica oleracea HOM05D014803 ORTHO05D017502 1.3e-146 523.1 279 94.6
BraA03t14498Z Brassica rapa HOM05D014803 ORTHO05D017502 9.4e-68 261.2 171 81.3
BcaC04g20480 Brassica carinata HOM05D001732 ORTHO05D006715 8.8e-50 201.4 128 82.0
BcaB03g14675 Brassica carinata HOM05D001732 ORTHO05D006715 2.5e-44 183.3 141 69.5
C03p43150 Brassica napus HOM05D001732 ORTHO05D006715 2.5e-44 183.3 141 69.5
BolC3t16584H Brassica oleracea HOM05D001732 ORTHO05D006715 2.5e-44 183.3 141 69.5
BcaB03g14676 Brassica carinata HOM05D001732 ORTHO05D006715 2.1e-43 180.3 141 68.8
Sp3g06780 Schrenkiella parvula HOM05D001732 ORTHO05D006715 8.0e-43 178.3 141 66.7
A03p35490 Brassica napus HOM05D001732 ORTHO05D006715 2.3e-42 176.8 141 67.4
BraA03t12726Z Brassica rapa HOM05D001732 ORTHO05D006715 5.2e-42 175.6 141 66.7
CARHR082580 Cardamine hirsuta HOM05D001732 ORTHO05D006715 4.4e-41 172.6 141 65.2
AT3G07860 Arabidopsis thaliana HOM05D001732 ORTHO05D006715 2.8e-40 169.9 132 68.9
Thhalv10021648m.g Eutrema salsugineum HOM05D001732 ORTHO05D006715 3.1e-39 166.4 137 64.2
AL3G19230 Arabidopsis lyrata HOM05D001732 ORTHO05D006715 1.2e-38 164.5 132 66.7
Carub.0003s0744 Capsella rubella HOM05D001732 ORTHO05D006715 1.0e-37 161.4 143 62.9
C02p46570 Brassica napus HOM05D014803 ORTHO05D017502 3.3e-36 156.4 136 66.2
Aa31LG5G18420 Aethionema arabicum HOM05D001732 ORTHO05D006715 1.2e-35 154.5 137 59.9
THA.LOC104809864 Tarenaya hassleriana HOM05D001732 ORTHO05D006715 6.8e-34 148.7 142 55.6
COL.COLO4_26069 Corchorus olitorius HOM05D001732 ORTHO05D006715 5.6e-28 129.0 161 47.2
Cfa007703 Carpinus fangiana HOM05D001732 ORTHO05D006715 2.1e-27 127.1 154 46.1
ClCG05G015370 Citrullus lanatus HOM05D001732 ORTHO05D006715 3.6e-27 126.3 138 51.4
QL12p036301 Quercus lobata HOM05D001732 ORTHO05D006715 8.0e-27 125.2 143 51.0
Cpa.g.sc128.68 Carica papaya HOM05D001732 ORTHO05D006715 1.1e-26 124.8 140 49.3
Ciclev10002649m.g Citrus clementina HOM05D001732 ORTHO05D006715 1.1e-26 124.8 153 47.1
Eucgr.F03702 Eucalyptus grandis HOM05D001732 ORTHO05D006715 1.4e-26 124.4 146 50.7
C02p36650 Brassica napus HOM05D014803 ORTHO05D017502 2.3e-26 123.6 119 61.3
Manes.02G226700 Manihot esculenta HOM05D001732 ORTHO05D006715 3.1e-26 123.2 137 50.4
CsaV3_4G036990 Cucumis sativus L. HOM05D001732 ORTHO05D006715 4.0e-26 122.9 137 49.6
DCAR_016903 Daucus carota HOM05D001732 ORTHO05D006715 4.0e-26 122.9 141 50.4
ECA233G1657 Erigeron canadensis HOM05D001732 ORTHO05D006715 4.0e-26 122.9 131 51.9
Lalb_Chr19g0139341 Lupinus albus HOM05D001732 ORTHO05D006715 5.2e-26 122.5 141 46.1
Sed0004106 Sechium edule HOM05D001732 ORTHO05D006715 5.2e-26 122.5 130 54.6
Glyma.11G102700 Glycine max HOM05D001732 ORTHO05D006715 6.8e-26 122.1 124 50.8
Glyma.11G102900 Glycine max HOM05D001732 ORTHO05D006715 6.8e-26 122.1 124 50.8
unitig_0.g2094 Utricularia gibba HOM05D000560 ORTHO05D000417 8.9e-26 121.7 152 46.7
Aqoxy6G01904 Aquilegia oxysepala HOM05D001732 ORTHO05D006715 1.2e-25 121.3 134 51.5
Phvul.002G058300 Phaseolus vulgaris HOM05D001732 ORTHO05D006715 1.2e-25 121.3 124 50.8
Prupe.1G358400 Prunus persica HOM05D001732 ORTHO05D006715 1.5e-25 120.9 138 48.6
PGR031G2961 Punica granatum HOM05D001732 ORTHO05D006715 2.0e-25 120.6 132 49.2
RcHm_v2.0_Chr6g0303781 Rosa chinensis HOM05D001732 ORTHO05D006715 2.0e-25 120.6 125 50.4
CiPaw.04G051700 Carya illinoinensis HOM05D001732 ORTHO05D006715 2.6e-25 120.2 136 50.7
Dinv24804 Davidia involucrata HOM05D001732 ORTHO05D006715 2.6e-25 120.2 124 50.0
Cc10_g01020 Coffea canephora HOM05D001732 ORTHO05D006715 3.4e-25 119.8 125 52.8
Haze_14372 Corylus avellana HOM05D001732 ORTHO05D006715 3.4e-25 119.8 136 47.8
Duzib116G0808 Durio zibethinus HOM05D001732 ORTHO05D006715 3.4e-25 119.8 162 46.9
PSO210G2512 Papaver somniferum HOM05D001732 ORTHO05D006715 3.4e-25 119.8 129 50.4
Gohir.A11G200232 Gossypium hirsutum HOM05D001732 ORTHO05D006715 4.4e-25 119.4 163 45.4
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 4.4e-25 119.4 141 47.5
TAR625G1178 Trochodendron aralioides HOM05D001732 ORTHO05D006715 5.8e-25 119.0 125 48.8
arahy.Tifrunner.gnm1.ann1.60EZUA Arachis hypogaea HOM05D001732 ORTHO05D006715 7.5e-25 118.6 138 44.9
arahy.Tifrunner.gnm1.ann1.ND8TJ1 Arachis hypogaea HOM05D001732 ORTHO05D006715 7.5e-25 118.6 138 44.9
Actinidia37958 Actinidia chinensis HOM05D001732 ORTHO05D006715 9.8e-25 118.2 139 46.8
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 9.8e-25 118.2 139 48.2
Nitab4.5_0000743g0150 Nicotiana tabacum HOM05D001732 ORTHO05D006715 9.8e-25 118.2 137 45.3
PSO170G3407 Papaver somniferum HOM05D001732 ORTHO05D006715 9.8e-25 118.2 129 49.6
Gohir.1Z049315 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.3e-24 117.9 157 45.2
Gohir.D02G000300 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.3e-24 117.9 157 45.2
Gohir.D08G006900 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.3e-24 117.9 157 45.2
Gorai.005G000800 Gossypium raimondii HOM05D001732 ORTHO05D006715 1.3e-24 117.9 157 45.2
Gorai.006G274900 Gossypium raimondii HOM05D001732 ORTHO05D006715 1.3e-24 117.9 157 45.2
Medtr4g074450 Medicago truncatula HOM05D001732 ORTHO05D006715 1.3e-24 117.9 126 50.0
GSVIVG01008724001 Vitis vinifera HOM05D001732 ORTHO05D006715 1.3e-24 117.9 134 46.3
MSTRG.2679 Avicennia marina HOM05D001732 ORTHO05D006715 1.7e-24 117.5 129 49.6
AUR62036745 Chenopodium quinoa HOM05D001732 ORTHO05D006715 1.7e-24 117.5 129 49.6
Ca_03030_v3 Cicer arietinum L. HOM05D001732 ORTHO05D006715 1.7e-24 117.5 139 48.2
PGSC0003DMG402016244 Solanum tuberosum HOM05D001732 ORTHO05D006715 1.7e-24 117.5 137 45.3
SGA_v2.0_scaffold145G36108 Striga asiatica HOM05D001732 ORTHO05D006715 1.7e-24 117.5 129 48.1
Thecc.08G053200 Theobroma cacao HOM05D001732 ORTHO05D006715 1.7e-24 117.5 162 46.3
Gorai.007G379800 Gossypium raimondii HOM05D001732 ORTHO05D006715 2.2e-24 117.1 157 45.2
AUR62013855 Chenopodium quinoa HOM05D001732 ORTHO05D006715 2.9e-24 116.7 129 48.8
Lj3g0013314 Lotus japonicus HOM05D001732 ORTHO05D006715 2.9e-24 116.7 138 47.1
MD08G1006500 Malus domestica HOM05D001732 ORTHO05D006715 2.9e-24 116.7 137 46.7
Atru.chr13.201 Acer truncatum HOM05D001732 ORTHO05D006715 3.7e-24 116.3 138 46.4
CDE08G0347 Ceratophyllum demersum HOM05D001732 ORTHO05D006715 3.7e-24 116.3 125 47.2
Gohir.D04G192600 Gossypium hirsutum HOM05D001732 ORTHO05D006715 6.4e-24 115.5 150 45.3
Nitab4.5_0005243g0020 Nicotiana tabacum HOM05D001732 ORTHO05D006715 6.4e-24 115.5 137 44.5
TPR.G32336 Trifolium pratense HOM05D001732 ORTHO05D006715 6.4e-24 115.5 126 49.2
CAN.G691.13 Capsicum annuum HOM05D001732 ORTHO05D006715 8.3e-24 115.2 137 46.0
Solyc11g008730.2 Solanum lycopersicum HOM05D001732 ORTHO05D006715 8.3e-24 115.2 137 44.5
Sopen11g004510 Solanum pennellii HOM05D001732 ORTHO05D006715 8.3e-24 115.2 137 44.5
SGA_v2.0_scaffold236G43748 Striga asiatica HOM05D001732 ORTHO05D006715 8.3e-24 115.2 144 42.4
VMungo1215G0739 Vigna mungo HOM05D001732 ORTHO05D006715 8.3e-24 115.2 124 49.2
ATR0661G291 Amborella trichopoda HOM05D001732 ORTHO05D006715 1.1e-23 114.8 133 50.4
CSS0027369 Camellia sinensis var. sinensis HOM05D001732 ORTHO05D006715 1.1e-23 114.8 139 48.9
Gohir.A01G232000 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.1e-23 114.8 157 44.6
Gohir.A13G000800 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.1e-23 114.8 156 44.2
vmacro04384 Vaccinium macrocarpon HOM05D001732 ORTHO05D006715 1.1e-23 114.8 124 49.2
Gohir.D08G275600 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.4e-23 114.4 158 45.6
Gorai.009G456200 Gossypium raimondii HOM05D001732 ORTHO05D006715 1.4e-23 114.4 214 35.5
TWI12G0398 Tripterygium wilfordii HOM05D001732 ORTHO05D006715 1.4e-23 114.4 135 45.9
TWI77G0460 Tripterygium wilfordii HOM05D001732 ORTHO05D006715 1.4e-23 114.4 131 46.6
C08p40300 Brassica napus HOM05D014803 ORTHO05D017502 1.9e-23 114.0 116 60.3
Rhsim07G0251800 Rhododendron simsii HOM05D001732 ORTHO05D006715 1.9e-23 114.0 124 51.6
BolC8t51598H Brassica oleracea HOM05D014803 ORTHO05D017502 2.4e-23 113.6 116 60.3
Gorai.007G240300 Gossypium raimondii HOM05D001732 ORTHO05D006715 2.4e-23 113.6 146 45.9
CSS0031494 Camellia sinensis var. sinensis HOM05D001732 ORTHO05D006715 3.2e-23 113.2 134 47.0
EL10Ac1g02055 Beta vulgaris HOM05D001732 ORTHO05D006715 4.1e-23 112.8 134 47.0
Gohir.1Z049365 Gossypium hirsutum HOM05D001732 ORTHO05D006715 4.1e-23 112.8 158 44.3
Gohir.A08G000020 Gossypium hirsutum HOM05D001732 ORTHO05D006715 4.1e-23 112.8 158 44.3
Migut.N02762 Erythranthe guttata HOM05D001732 ORTHO05D006715 5.4e-23 112.5 141 44.7
FAN27G1331 Fragaria x ananassa HOM05D001732 ORTHO05D006715 5.4e-23 112.5 124 50.8
Gohir.1Z049638 Gossypium hirsutum HOM05D001732 ORTHO05D006715 5.4e-23 112.5 158 44.9
Nn5g30866 Nelumbo nucifera HOM05D001732 ORTHO05D006715 7.0e-23 112.1 139 46.0
CANSAT25G2855 Cannabis sativa HOM05D001732 ORTHO05D006715 2.0e-22 110.5 129 50.4
Os04g0663500 Oryza sativa ssp. japonica HOM05D001732 ORTHO05D006715 4.6e-22 109.4 127 44.9
Potri.002G015002 Populus trichocarpa HOM05D001732 ORTHO05D006715 4.6e-22 109.4 134 45.5
Sabra02G0012000 Salix brachista HOM05D001732 ORTHO05D006715 4.6e-22 109.4 134 45.5
SalBow7G3452 Salvia bowleyana HOM05D001732 ORTHO05D006715 7.8e-22 108.6 141 45.4
Gohir.D11G222700 Gossypium hirsutum HOM05D001732 ORTHO05D006715 2.3e-21 107.1 161 42.2
Mapoly0095s0017 Marchantia polymorpha HOM05D001732 ORTHO05D006715 3.9e-21 106.3 118 46.6
Oeu017913.1 Olea europaea HOM05D001732 ORTHO05D006715 5.0e-21 105.9 121 47.1
Zm00001eb067320 Zea mays HOM05D001732 ORTHO05D006715 6.6e-21 105.5 127 46.5
Sc02g0008940 Simmondsia chinensis HOM05D001732 ORTHO05D006715 2.5e-20 103.6 74 63.5
MBI08_g41940_MAGBIO Magnolia biondii HOM05D001732 ORTHO05D006715 5.6e-20 102.4 74 59.5
FAN15G0072 Fragaria x ananassa HOM05D001732 ORTHO05D006715 4.7e-19 99.4 177 36.2
HPP92_015011 Vanilla planifolia HOM05D001732 ORTHO05D006715 4.7e-19 99.4 127 41.7
Pp3c18_13370 Physcomitrium patens HOM05D001732 ORTHO05D006715 6.2e-19 99.0 131 42.0
AagrBONN_evm.TU.Sc2ySwM_117.2831 Anthoceros agrestis HOM05D001732 ORTHO05D006715 1.1e-18 98.2 126 39.7
BcaC03g15897 Brassica carinata HOM05D001732 ORTHO05D006715 2.3e-18 97.1 87 65.5
AagrBONN_evm.TU.Sc2ySwM_340.241 Anthoceros agrestis HOM05D001732 ORTHO05D006715 3.1e-18 96.7 126 39.7
HanXRQChr12g0366641 Helianthus annuus HOM05D001732 ORTHO05D006715 6.8e-18 95.5 85 57.6
BolC7t41425H Brassica oleracea HOM05D014803 ORTHO05D017502 1.2e-17 94.7 137 48.2
Gorai.004G294300 Gossypium raimondii HOM05D001732 ORTHO05D006715 5.8e-17 92.4 108 48.1
Gohir.A07G233500 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.7e-16 90.9 60 66.7
Aqoxy2G01192 Aquilegia oxysepala HOM05D001732 ORTHO05D006715 7.1e-15 85.5 131 43.5
C02p36660 Brassica napus HOM05D001732 ORTHO05D006715 1.2e-14 84.7 48 89.6
Gohir.A11G330000 Gossypium hirsutum HOM05D001732 ORTHO05D006715 6.0e-14 82.4 148 41.2
BcaB06g26153 Brassica carinata HOM05D001732 ORTHO05D006715 7.8e-14 82.0 47 87.2
BcaC06g35903 Brassica carinata HOM05D001732 ORTHO05D006715 3.9e-13 79.7 99 54.5
Pp3c21_7260 Physcomitrium patens HOM05D001732 ORTHO05D006715 3.9e-13 79.7 131 35.9
Actinidia29773 Actinidia chinensis HOM05D001732 ORTHO05D006715 1.5e-12 77.8 112 42.0
Peaxi162Scf00254g00422 Petunia axillaris HOM05D001732 ORTHO05D006715 7.3e-12 75.5 137 36.5
Glyma.12G028033 Glycine max HOM05D001732 ORTHO05D006715 2.1e-11 73.9 47 66.0
Pp3c19_2430 Physcomitrium patens HOM05D001732 ORTHO05D006715 1.4e-10 71.2 140 32.9
C07p09830 Brassica napus HOM05D001732 ORTHO05D006715 5.2e-10 69.3 48 77.1
Psat6g203000 Pisum sativum HOM05D001732 ORTHO05D006715 6.8e-10 68.9 104 38.5
BcaC07g41028 Brassica carinata HOM05D001732 ORTHO05D006715 3.4e-09 66.6 99 51.5
BolC2t09660H Brassica oleracea HOM05D014803 ORTHO05D104992 9.9e-09 65.1 77 53.2
C07p09850 Brassica napus HOM05D028671 ORTHO05D102260 1.7e-08 64.3 34 91.2
CBR_g49713 Chara braunii HOM05D006523 ORTHO05D008212 3.8e-08 63.2 132 31.1
CBR_g48797 Chara braunii HOM05D001732 ORTHO05D006715 1.4e-07 61.2 132 29.5
FAN20G1153 Fragaria x ananassa HOM05D001732 ORTHO05D006715 5.4e-07 59.3 89 46.1
CiPaw.03G247600 Carya illinoinensis HOM05D001732 ORTHO05D003164 1.2e-06 58.2 90 34.4
SHI43126 Sapria himalayana HOM05D001732 ORTHO05D006715 3.5e-06 56.6 158 28.5
Lsat_1_v5_gn_8_28861 Lactuca sativa HOM05D001732 ORTHO05D006715 4.6e-06 56.2 95 38.9


User provided reference genes

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