Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 3.5e-247 857.8 426 100.0
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 2.6e-226 788.5 426 93.2
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 2.6e-226 788.5 426 93.2
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 1.4e-219 766.1 426 90.1
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 1.4e-219 766.1 426 90.1
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 4.0e-211 738.0 426 86.2
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 2.2e-201 705.7 430 83.0
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 2.2e-201 705.7 430 83.0
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 8.4e-201 703.7 429 83.2
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 1.4e-200 703.0 430 82.8
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 1.9e-200 702.6 428 82.7
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 7.1e-200 700.7 426 80.0
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 1.7e-198 696.0 428 82.5
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 5.6e-197 691.0 428 82.0
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 4.7e-196 688.0 434 81.1
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 9.0e-195 683.7 430 81.2
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 8.4e-185 650.6 426 75.6
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 1.1e-184 650.2 429 76.7
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 2.1e-183 646.0 430 75.8
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 2.8e-180 635.6 473 69.8
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 6.2e-172 607.8 470 67.0
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 1.8e-166 589.7 435 68.0
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 1.1e-157 560.5 423 67.1
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 1.4e-150 537.0 431 63.6
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 3.0e-150 535.8 430 62.6
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 3.1e-147 525.8 429 61.1
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 3.4e-146 522.3 431 61.0
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 5.0e-145 518.5 437 62.2
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 3.2e-144 515.8 440 60.5
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 1.2e-143 513.8 435 59.3
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 2.7e-143 512.7 430 60.7
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 3.6e-143 512.3 433 61.7
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 4.7e-143 511.9 431 60.8
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.0e-142 510.8 431 61.3
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 1.4e-142 510.4 432 61.3
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 1.8e-142 510.0 424 60.6
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 3.0e-142 509.2 411 62.3
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 5.2e-142 508.4 430 61.4
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 6.7e-142 508.1 431 60.1
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 1.1e-141 507.3 431 58.9
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 1.1e-141 507.3 430 60.9
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 1.5e-141 506.9 438 59.6
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 7.4e-141 504.6 430 60.7
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 7.4e-141 504.6 425 60.0
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 9.7e-141 504.2 429 60.8
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 1.3e-140 503.8 434 58.8
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 1.7e-140 503.4 424 60.4
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 3.7e-140 502.3 430 59.8
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 4.8e-140 501.9 427 58.8
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 8.2e-140 501.1 437 58.8
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 1.8e-139 500.0 431 58.0
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 1.8e-139 500.0 430 60.5
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 7.0e-139 498.0 446 57.6
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 7.0e-139 498.0 432 59.7
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 9.1e-139 497.7 428 59.1
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 3.5e-138 495.7 431 57.3
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 3.5e-138 495.7 427 57.6
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 4.5e-138 495.4 436 58.5
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 5.9e-138 495.0 456 57.9
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 5.9e-138 495.0 426 60.1
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 7.7e-138 494.6 434 56.9
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 1.7e-137 493.4 439 58.1
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 2.2e-137 493.0 428 59.6
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 3.8e-137 492.3 456 57.9
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 3.8e-137 492.3 438 56.2
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 3.8e-137 492.3 426 60.1
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 5.0e-137 491.9 435 56.8
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 5.0e-137 491.9 426 59.6
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 6.5e-137 491.5 427 60.2
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 6.5e-137 491.5 425 59.5
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 1.1e-136 490.7 434 56.7
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 1.1e-136 490.7 429 59.4
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 1.9e-136 490.0 426 59.9
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 1.9e-136 490.0 442 57.9
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 2.5e-136 489.6 427 59.7
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 7.2e-136 488.0 437 57.0
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 9.4e-136 487.6 432 57.4
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 9.4e-136 487.6 432 57.4
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 6.1e-135 485.0 433 58.7
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 6.1e-135 485.0 355 65.9
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 1.0e-134 484.2 426 58.9
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 1.4e-134 483.8 428 58.9
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 2.3e-134 483.0 394 61.7
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.2e-133 480.7 426 59.2
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 1.5e-133 480.3 438 56.6
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 3.3e-133 479.2 427 57.1
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 4.4e-133 478.8 427 57.1
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 5.7e-133 478.4 425 57.9
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 5.7e-133 478.4 427 57.1
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 1.4e-131 473.8 434 56.0
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 5.3e-131 471.9 384 62.5
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 2.0e-130 469.9 433 55.9
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 5.9e-130 468.4 445 56.4
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 5.0e-129 465.3 372 62.4
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.5e-128 463.0 414 58.0
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 4.2e-128 462.2 430 54.4
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 4.2e-128 462.2 368 62.5
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 5.5e-128 461.8 506 49.6
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 9.4e-128 461.1 356 64.3
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 1.2e-127 460.7 425 55.5
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 1.2e-127 460.7 431 53.8
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 1.2e-127 460.7 434 54.4
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 1.6e-127 460.3 433 54.0
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 1.8e-126 456.8 355 63.1
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 2.3e-126 456.4 433 57.0
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 3.0e-126 456.1 355 62.3
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 4.0e-126 455.7 372 61.6
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 5.2e-126 455.3 429 54.1
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 4.4e-125 452.2 366 62.6
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 9.8e-125 451.1 427 53.9
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.3e-124 450.7 402 59.0
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 2.8e-124 449.5 375 60.5
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 2.0e-122 443.4 425 52.2
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 4.5e-122 442.2 421 53.4
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 4.5e-122 442.2 438 51.1
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 1.1e-120 437.6 428 54.7
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 1.5e-120 437.2 373 58.7
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 5.5e-120 435.3 438 53.0
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 7.2e-120 434.9 427 51.5
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 3.6e-119 432.6 430 53.0
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 6.1e-119 431.8 434 50.9
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.3e-118 429.9 379 58.0
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 1.1e-112 411.0 338 62.1
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 4.4e-109 399.1 472 45.8
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 5.0e-105 385.6 374 53.5
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 3.7e-100 369.4 320 57.8
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 2.0e-93 347.1 410 43.2
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 1.7e-84 317.4 366 45.1
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 3.8e-84 316.2 331 45.6
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 2.3e-81 307.0 298 52.7
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 7.6e-77 292.0 196 71.9
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 6.4e-76 288.9 377 41.6
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 6.0e-74 282.3 373 42.4
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 4.8e-71 272.7 298 47.7
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 1.1e-70 271.6 219 60.7
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 1.2e-66 258.1 299 47.2
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 3.0e-65 253.4 267 50.6
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 3.7e-63 246.5 362 41.4
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 7.7e-45 185.7 348 35.1
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 8.8e-41 172.2 133 61.7
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.1e-40 171.8 176 47.2
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 2.4e-38 164.1 189 47.6
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 2.6e-32 144.1 350 29.7
Lj3C903G5 Lonicera japonica HOM05D002306 ORTHO05D005773 4.8e-31 139.8 104 66.3
COL.COLO4_16789 Corchorus olitorius HOM05D002476 ORTHO05D002652 6.3e-31 139.4 107 62.6
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 2.9e-28 130.6 353 29.2
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 9.7e-24 115.5 118 55.1
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 1.6e-18 98.2 89 57.3
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.1e-18 97.8 72 62.5
SEGI_09966 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 2.1e-18 97.8 131 44.3
Lsat_1_v5_gn_5_184380 Lactuca sativa HOM05D000942 ORTHO05D014303 4.4e-16 90.1 61 67.2
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 7.5e-16 89.4 87 51.7
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 4.8e-15 86.7 68 54.4
TAR629G2756 Trochodendron aralioides HOM05D002306 ORTHO05D005773 7.0e-14 82.8 68 63.2
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 1.6e-13 81.6 71 59.2
Medtr5g071310 Medicago truncatula HOM05D000009 ORTHO05D000008 1.3e-12 78.6 150 34.7
Lsat_1_v5_gn_7_88240 Lactuca sativa HOM05D000942 ORTHO05D014303 8.8e-09 65.9 120 39.2
SEGI_03713 Sequoiadendron giganteum HOM05D002306 ORTHO05D036569 1.1e-06 58.9 50 48.0
Cpa.g.sc6.184 Carica papaya HOM05D000363 ORTHO05D000236 5.4e-06 56.6 111 34.2


User provided reference genes

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