Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p41720 Brassica napus HOM05D004514 ORTHO05D005147 1.1e-156 556.6 279 100.0
BolC9t57057H Brassica oleracea HOM05D004514 ORTHO05D005147 1.1e-156 556.6 279 100.0
A03p68150 Brassica napus HOM05D004514 ORTHO05D005147 5.7e-81 305.1 261 67.0
A09p34540 Brassica napus HOM05D004514 ORTHO05D005147 1.4e-74 283.9 180 81.1
BcaC04g20593 Brassica carinata HOM05D004514 ORTHO05D005147 3.3e-73 279.3 140 97.9
A04p20440 Brassica napus HOM05D004514 ORTHO05D005147 1.1e-65 254.2 164 80.5
BraA01t02652Z Brassica rapa HOM05D004514 ORTHO05D005147 7.7e-62 241.5 141 90.8
BcaB03g12450 Brassica carinata HOM05D004514 ORTHO05D005147 8.6e-45 184.9 99 90.9
C01p20220 Brassica napus HOM05D004514 ORTHO05D005147 9.5e-44 181.4 147 66.0
BolC1t01951H Brassica oleracea HOM05D004514 ORTHO05D005147 9.5e-44 181.4 147 66.0
BcaNung07127 Brassica carinata HOM05D004514 ORTHO05D005147 6.1e-43 178.7 130 70.8
BraA01t01559Z Brassica rapa HOM05D004514 ORTHO05D005147 2.3e-42 176.8 130 72.3
Sp7g22920 Schrenkiella parvula HOM05D004514 ORTHO05D005147 2.3e-42 176.8 99 85.9
A01p16230 Brassica napus HOM05D004514 ORTHO05D005147 3.0e-42 176.4 130 71.5
AL7G28260 Arabidopsis lyrata HOM05D004514 ORTHO05D005147 5.2e-42 175.6 99 86.9
Carub.0007s1612 Capsella rubella HOM05D004514 ORTHO05D005147 2.6e-41 173.3 99 84.8
AT4G24940 Arabidopsis thaliana HOM05D004514 ORTHO05D005147 3.4e-41 172.9 99 84.8
Thhalv10025730m.g Eutrema salsugineum HOM05D004514 ORTHO05D005147 1.3e-40 171.0 93 89.2
CARHR232340 Cardamine hirsuta HOM05D004514 ORTHO05D005147 4.1e-39 166.0 99 81.8
Sp6g12760 Schrenkiella parvula HOM05D004514 ORTHO05D005147 1.1e-36 157.9 99 72.7
AL8G24840 Arabidopsis lyrata HOM05D004514 ORTHO05D005147 1.9e-36 157.1 99 72.7
Carub.0008s1067 Capsella rubella HOM05D004514 ORTHO05D005147 7.3e-36 155.2 99 72.7
Aa31LG7G10850 Aethionema arabicum HOM05D004514 ORTHO05D005147 1.6e-35 154.1 117 62.4
CARHR257690 Cardamine hirsuta HOM05D004514 ORTHO05D005147 2.1e-35 153.7 99 71.7
AT5G50580 Arabidopsis thaliana HOM05D004514 ORTHO05D005147 8.0e-35 151.8 99 70.7
AT5G50680 Arabidopsis thaliana HOM05D004514 ORTHO05D005147 8.0e-35 151.8 99 70.7
Haze_07164 Corylus avellana HOM05D004514 ORTHO05D005147 2.2e-32 143.7 99 66.7
THA.LOC104806080 Tarenaya hassleriana HOM05D004514 ORTHO05D005147 8.3e-32 141.7 99 68.7
TAR371G0381 Trochodendron aralioides HOM05D004514 ORTHO05D005147 1.4e-31 141.0 99 64.6
DCAR_016379 Daucus carota HOM05D004514 ORTHO05D005147 4.1e-31 139.4 99 63.6
Hund02453 Selenicereus undatus HOM05D004514 ORTHO05D005147 5.4e-31 139.0 105 64.8
Manes.14G049500 Manihot esculenta HOM05D004514 ORTHO05D005147 7.0e-31 138.7 99 65.7
Psat7g036440 Pisum sativum HOM05D004514 ORTHO05D005147 7.0e-31 138.7 99 62.6
GSVIVG01008554001 Vitis vinifera HOM05D004514 ORTHO05D005147 7.0e-31 138.7 95 67.4
QL10p002475 Quercus lobata HOM05D004514 ORTHO05D005147 9.2e-31 138.3 99 65.7
Sabra15G0119900 Salix brachista HOM05D004514 ORTHO05D005147 9.2e-31 138.3 99 63.6
Aqoxy5G03306 Aquilegia oxysepala HOM05D004514 ORTHO05D005147 1.2e-30 137.9 99 64.6
Glyma.08G011400 Glycine max HOM05D004514 ORTHO05D005147 1.2e-30 137.9 95 64.2
Gohir.A12G190300 Gossypium hirsutum HOM05D004514 ORTHO05D005147 1.6e-30 137.5 99 63.6
Lj4g0022972 Lotus japonicus HOM05D004514 ORTHO05D005147 1.6e-30 137.5 99 62.6
Actinidia25561 Actinidia chinensis HOM05D004514 ORTHO05D005147 2.7e-30 136.7 97 64.9
arahy.Tifrunner.gnm1.ann1.PL1S0I Arachis hypogaea HOM05D004514 ORTHO05D005147 2.7e-30 136.7 99 62.6
arahy.Tifrunner.gnm1.ann1.V9PUN9 Arachis hypogaea HOM05D004514 ORTHO05D005147 2.7e-30 136.7 99 62.6
Dinv23167 Davidia involucrata HOM05D004514 ORTHO05D005147 2.7e-30 136.7 99 64.6
MELO3C002371.2 Cucumis melo HOM05D004514 ORTHO05D005147 4.6e-30 136.0 129 51.2
Potri.012G100800 Populus trichocarpa HOM05D004514 ORTHO05D005147 4.6e-30 136.0 99 64.6
Potri.015G099000 Populus trichocarpa HOM05D004514 ORTHO05D005147 4.6e-30 136.0 95 65.3
ClCG03G003890 Citrullus lanatus HOM05D004514 ORTHO05D005147 5.9e-30 135.6 96 62.5
Hma1.2p1_0014F.1_g009230 Hydrangea macrophylla HOM05D004514 ORTHO05D005147 5.9e-30 135.6 99 65.7
Cc01_g02400 Coffea canephora HOM05D004514 ORTHO05D005147 7.8e-30 135.2 95 65.3
Gohir.D12G192600 Gossypium hirsutum HOM05D004514 ORTHO05D005147 7.8e-30 135.2 99 62.6
Gorai.008G207100 Gossypium raimondii HOM05D004514 ORTHO05D005147 7.8e-30 135.2 99 62.6
Lalb_Chr12g0202281 Lupinus albus HOM05D004514 ORTHO05D005147 7.8e-30 135.2 99 62.6
Sed0016514 Sechium edule HOM05D004514 ORTHO05D005147 7.8e-30 135.2 193 40.9
TPR.G12790 Trifolium pratense HOM05D004514 ORTHO05D005147 7.8e-30 135.2 99 61.6
Ca_17561_v3 Cicer arietinum L. HOM05D004514 ORTHO05D005147 1.0e-29 134.8 99 60.6
Duzib084G0819 Durio zibethinus HOM05D004514 ORTHO05D005147 1.0e-29 134.8 99 61.6
Lj4g0011293 Lotus japonicus HOM05D004514 ORTHO05D005147 1.0e-29 134.8 99 62.6
Phvul.002G285900 Phaseolus vulgaris HOM05D004514 ORTHO05D005147 1.0e-29 134.8 99 60.6
TAR629G1553 Trochodendron aralioides HOM05D004514 ORTHO05D005147 1.0e-29 134.8 99 62.6
VMungo0251G2558 Vigna mungo HOM05D004514 ORTHO05D005147 1.0e-29 134.8 99 60.6
Ah.11g044000 Amaranthus hybridus HOM05D004514 ORTHO05D005147 1.3e-29 134.4 98 65.3
EL10Ac2g03710 Beta vulgaris HOM05D004514 ORTHO05D005147 1.3e-29 134.4 99 65.7
COL.COLO4_06539 Corchorus olitorius HOM05D004514 ORTHO05D005147 1.7e-29 134.0 99 62.6
CsaV3_1G009770 Cucumis sativus L. HOM05D004514 ORTHO05D005147 1.7e-29 134.0 97 62.9
MD14G1154700 Malus domestica HOM05D004514 ORTHO05D005147 1.7e-29 134.0 99 63.6
PGSC0003DMG400015268 Solanum tuberosum HOM05D004514 ORTHO05D005147 1.7e-29 134.0 95 66.3
Medtr8g096740 Medicago truncatula HOM05D004514 ORTHO05D005147 2.3e-29 133.7 99 61.6
PSO017G0632 Papaver somniferum HOM05D004514 ORTHO05D005147 2.3e-29 133.7 99 64.6
TWI23G1308 Tripterygium wilfordii HOM05D004514 ORTHO05D005147 2.3e-29 133.7 99 59.6
AUR62038747 Chenopodium quinoa HOM05D004514 ORTHO05D005147 3.0e-29 133.3 99 63.6
PSO478G4665 Papaver somniferum HOM05D004514 ORTHO05D005147 3.0e-29 133.3 99 64.6
Glyma.05G204000 Glycine max HOM05D004514 ORTHO05D005147 3.9e-29 132.9 95 62.1
Gohir.A03G054600 Gossypium hirsutum HOM05D004514 ORTHO05D005147 3.9e-29 132.9 99 61.6
Sed0020700 Sechium edule HOM05D004514 ORTHO05D005147 3.9e-29 132.9 99 59.6
Solyc03g019730.4 Solanum lycopersicum HOM05D004514 ORTHO05D005147 3.9e-29 132.9 95 66.3
Sopen03g029890 Solanum pennellii HOM05D004514 ORTHO05D005147 3.9e-29 132.9 95 66.3
AUR62020635 Chenopodium quinoa HOM05D004514 ORTHO05D005147 5.0e-29 132.5 99 63.6
FvH4_5g08600 Fragaria vesca HOM05D004514 ORTHO05D005147 5.0e-29 132.5 111 57.7
Lalb_Chr07g0183531 Lupinus albus HOM05D004514 ORTHO05D005147 5.0e-29 132.5 99 61.6
MD06G1138700 Malus domestica HOM05D004514 ORTHO05D005147 5.0e-29 132.5 99 62.6
CANSAT80G0288 Cannabis sativa HOM05D004514 ORTHO05D005147 8.6e-29 131.7 99 63.6
CANSAT80G1302 Cannabis sativa HOM05D004514 ORTHO05D005147 8.6e-29 131.7 99 63.6
Gohir.D03G112233 Gossypium hirsutum HOM05D004514 ORTHO05D005147 8.6e-29 131.7 99 61.6
Gorai.003G118500 Gossypium raimondii HOM05D004514 ORTHO05D005147 8.6e-29 131.7 99 61.6
FAN08G2687 Fragaria x ananassa HOM05D004514 ORTHO05D005147 1.1e-28 131.3 111 56.8
Lj5C94G12 Lonicera japonica HOM05D004514 ORTHO05D005147 1.1e-28 131.3 99 61.6
SGA_v2.0_scaffold40G15556 Striga asiatica HOM05D004514 ORTHO05D005147 1.1e-28 131.3 96 63.5
FAN04G1407 Fragaria x ananassa HOM05D004514 ORTHO05D005147 1.5e-28 131.0 111 56.8
PGR044G2046 Punica granatum HOM05D004514 ORTHO05D005147 1.5e-28 131.0 99 62.6
Sc04g0000510 Simmondsia chinensis HOM05D004514 ORTHO05D005147 1.5e-28 131.0 99 61.6
Eucgr.K02707 Eucalyptus grandis HOM05D004514 ORTHO05D005147 1.9e-28 130.6 99 61.6
Manes.06G121000 Manihot esculenta HOM05D004514 ORTHO05D005147 1.9e-28 130.6 99 59.6
CiPaw.12G044700 Carya illinoinensis HOM05D004514 ORTHO05D005147 2.5e-28 130.2 99 60.6
FAN13G0104 Fragaria x ananassa HOM05D004514 ORTHO05D005147 2.5e-28 130.2 99 60.6
FAN18G1834 Fragaria x ananassa HOM05D004514 ORTHO05D005147 3.3e-28 129.8 111 55.9
Prupe.5G148900 Prunus persica HOM05D004514 ORTHO05D005147 3.3e-28 129.8 99 61.6
Nitab4.5_0003367g0080 Nicotiana tabacum HOM05D004514 ORTHO05D005147 4.3e-28 129.4 99 62.6
vmacro19126 Vaccinium macrocarpon HOM05D004514 ORTHO05D005147 4.3e-28 129.4 99 61.6
MSTRG.11268 Avicennia marina HOM05D004514 ORTHO05D005147 5.6e-28 129.0 94 64.9
CSS0037403 Camellia sinensis var. sinensis HOM05D004514 ORTHO05D005147 5.6e-28 129.0 99 62.6
Ciclev10032114m.g Citrus clementina HOM05D004514 ORTHO05D005147 5.6e-28 129.0 95 62.1
Nitab4.5_0010179g0030 Nicotiana tabacum HOM05D004514 ORTHO05D005147 7.3e-28 128.6 99 62.6
SalBow5G3630 Salvia bowleyana HOM05D004514 ORTHO05D005147 7.3e-28 128.6 103 60.2
SalBow5G5364 Salvia bowleyana HOM05D004514 ORTHO05D005147 7.3e-28 128.6 103 60.2
RcHm_v2.0_Chr7g0189801 Rosa chinensis HOM05D004514 ORTHO05D005147 9.5e-28 128.3 99 59.6
Sabra12G0074100 Salix brachista HOM05D004514 ORTHO05D005147 1.2e-27 127.9 95 62.1
Thecc.03G131800 Theobroma cacao HOM05D004514 ORTHO05D005147 1.2e-27 127.9 99 59.6
Rhsim08G0191700 Rhododendron simsii HOM05D004514 ORTHO05D005147 2.1e-27 127.1 99 59.6
ATR0561G084 Amborella trichopoda HOM05D004514 ORTHO05D005147 2.8e-27 126.7 99 59.6
Peaxi162Scf00089g00124 Petunia axillaris HOM05D004514 ORTHO05D005147 4.7e-27 125.9 137 49.6
PGR119G0827 Punica granatum HOM05D004514 ORTHO05D005147 6.2e-27 125.6 98 61.2
SGA_v2.0_scaffold383G50415 Striga asiatica HOM05D004514 ORTHO05D005147 6.2e-27 125.6 95 62.1
CAN.G861.4 Capsicum annuum HOM05D004514 ORTHO05D005147 8.0e-27 125.2 95 62.1
MBI11_g22694_MAGBIO Magnolia biondii HOM05D004514 ORTHO05D005147 1.4e-26 124.4 99 59.6
Lsat_1_v5_gn_4_81560 Lactuca sativa HOM05D004514 ORTHO05D005147 1.8e-26 124.0 99 58.6
HanXRQChr09g0273381 Helianthus annuus HOM05D004514 ORTHO05D005147 3.1e-26 123.2 99 58.6
Migut.I00550 Erythranthe guttata HOM05D004514 ORTHO05D005147 1.2e-25 121.3 95 63.2
Peaxi162Scf00763g00222 Petunia axillaris HOM05D004514 ORTHO05D005147 1.2e-25 121.3 99 56.6
CAN.G65.55 Capsicum annuum HOM05D004514 ORTHO05D005147 1.5e-25 120.9 99 57.6
ECA232G1789 Erigeron canadensis HOM05D004514 ORTHO05D005147 2.0e-25 120.6 99 56.6
Nitab4.5_0000854g0050 Nicotiana tabacum HOM05D004514 ORTHO05D005147 2.0e-25 120.6 99 58.6
HPP92_009725 Vanilla planifolia HOM05D004514 ORTHO05D005147 1.7e-24 117.5 100 59.0
Nitab4.5_0000477g0040 Nicotiana tabacum HOM05D004514 ORTHO05D005147 3.7e-24 116.3 99 56.6
Os11g0497000 Oryza sativa ssp. japonica HOM05D004514 ORTHO05D005147 1.4e-23 114.4 100 56.0
SEGI_14500 Sequoiadendron giganteum HOM05D004514 ORTHO05D005147 1.4e-23 114.4 93 59.1
PGSC0003DMG400026973 Solanum tuberosum HOM05D004514 ORTHO05D005147 2.4e-23 113.6 99 54.5
BcaC07g37647 Brassica carinata HOM05D000917 ORTHO05D005147 3.2e-23 113.2 63 85.7
Sopen06g028370 Solanum pennellii HOM05D004514 ORTHO05D005147 5.4e-23 112.5 99 53.5
Zm00001eb169400 Zea mays HOM05D004514 ORTHO05D005147 2.3e-21 107.1 100 53.0
Pp3c21_6470 Physcomitrium patens HOM05D004514 ORTHO05D005147 9.5e-20 101.7 95 50.5
AagrBONN_evm.TU.Sc2ySwM_117.2260 Anthoceros agrestis HOM05D004514 ORTHO05D005147 2.1e-19 100.5 95 52.6
Cpa.g.sc807.6 Carica papaya HOM05D004514 ORTHO05D005147 1.1e-18 98.2 60 71.7
SHI10691 Sapria himalayana HOM05D004514 ORTHO05D005147 1.4e-18 97.8 98 51.0
BcaB04g18016 Brassica carinata HOM05D000804 ORTHO05D005389 4.0e-18 96.3 63 79.4
arahy.Tifrunner.gnm1.ann1.C7Z4ET Arachis hypogaea HOM05D004514 ORTHO05D005147 2.0e-17 94.0 99 48.5
Atru.chr5.373 Acer truncatum HOM05D004514 ORTHO05D005147 1.3e-16 91.3 99 48.5
unitig_22.g6251 Utricularia gibba HOM05D004514 ORTHO05D005147 3.7e-16 89.7 71 59.2
CDE06G0772 Ceratophyllum demersum HOM05D004514 ORTHO05D005147 4.1e-15 86.3 60 66.7
Sp5g30760 Schrenkiella parvula HOM05D000917 ORTHO05D000764 1.0e-13 81.6 71 59.2
CARHR069050 Cardamine hirsuta HOM05D000917 ORTHO05D000764 1.7e-13 80.9 71 59.2
Mapoly0059s0079 Marchantia polymorpha HOM05D004514 ORTHO05D005147 2.3e-13 80.5 100 39.0
BcaC03g15606 Brassica carinata HOM05D000917 ORTHO05D000764 3.0e-13 80.1 71 59.2
A02p20110 Brassica napus HOM05D000917 ORTHO05D000764 3.0e-13 80.1 71 59.2
C02p33820 Brassica napus HOM05D000917 ORTHO05D000764 3.0e-13 80.1 71 59.2
BraA02t07046Z Brassica rapa HOM05D000917 ORTHO05D000764 3.0e-13 80.1 71 59.2
BcaB05g24928 Brassica carinata HOM05D000917 ORTHO05D000764 6.6e-13 79.0 71 57.7
BolC2t09322H Brassica oleracea HOM05D000917 ORTHO05D000764 1.1e-12 78.2 62 64.5
AL2G35640 Arabidopsis lyrata HOM05D000917 ORTHO05D000764 1.5e-12 77.8 71 56.3
AT1G75660 Arabidopsis thaliana HOM05D000917 ORTHO05D000764 1.9e-12 77.4 71 56.3
Carub.0002s2249 Capsella rubella HOM05D000917 ORTHO05D000764 1.9e-12 77.4 71 56.3
Thhalv10018062m.g Eutrema salsugineum HOM05D000917 ORTHO05D000764 1.9e-12 77.4 71 56.3
SMO197G0026 Selaginella moellendorffii HOM05D004514 ORTHO05D005147 3.3e-12 76.6 107 40.2
BcaC08g47056 Brassica carinata HOM05D000917 ORTHO05D000764 5.6e-12 75.9 68 55.9
C06p49610 Brassica napus HOM05D000917 ORTHO05D000764 5.6e-12 75.9 71 54.9
CBR_g45419 Chara braunii HOM05D004514 ORTHO05D005147 1.2e-11 74.7 93 38.7
BolC6t39999H Brassica oleracea HOM05D000917 ORTHO05D000764 1.6e-11 74.3 71 53.5
A07p41190 Brassica napus HOM05D000917 ORTHO05D000764 6.2e-11 72.4 66 57.6
BraA07t31654Z Brassica rapa HOM05D000917 ORTHO05D000764 6.2e-11 72.4 66 57.6
Aa31LG3G570 Aethionema arabicum HOM05D000917 ORTHO05D000764 1.4e-10 71.2 71 53.5
Aa31sc115G50 Aethionema arabicum HOM05D000917 ORTHO05D000764 3.1e-10 70.1 54 63.0
Cpa.g.sc183.1 Carica papaya HOM05D000917 ORTHO05D000764 3.4e-09 66.6 64 54.7
THA.LOC104809408 Tarenaya hassleriana HOM05D000917 ORTHO05D000764 6.4e-08 62.4 66 51.5
Duzib041G0621 Durio zibethinus HOM05D000917 ORTHO05D000764 1.4e-07 61.2 72 51.4
Gohir.A05G257200 Gossypium hirsutum HOM05D000917 ORTHO05D000764 3.2e-07 60.1 72 50.0
Gohir.D05G258700 Gossypium hirsutum HOM05D000917 ORTHO05D000764 3.2e-07 60.1 72 50.0
Gorai.009G270300 Gossypium raimondii HOM05D000917 ORTHO05D000764 3.2e-07 60.1 72 50.0
Thecc.08G042300 Theobroma cacao HOM05D000917 ORTHO05D000764 3.2e-07 60.1 72 50.0
Gohir.D04G064650 Gossypium hirsutum HOM05D000917 ORTHO05D000764 4.1e-07 59.7 69 46.4
THA.LOC104811387 Tarenaya hassleriana HOM05D000917 ORTHO05D000764 7.1e-07 58.9 63 49.2
Lsat_1_v5_gn_3_104380 Lactuca sativa HOM05D000917 ORTHO05D000764 9.2e-07 58.5 54 53.7
Potri.005G237500 Populus trichocarpa HOM05D000917 ORTHO05D000764 1.2e-06 58.2 62 46.8
Sabra05G0183600 Salix brachista HOM05D000917 ORTHO05D000764 1.2e-06 58.2 62 46.8
Lsat_1_v5_gn_9_91580 Lactuca sativa HOM05D004514 ORTHO05D005147 2.1e-06 57.4 55 49.1
Pp3c13_11410 Physcomitrium patens HOM05D001929 ORTHO05D002426 2.1e-06 57.4 93 36.6
TAR381G1266 Trochodendron aralioides HOM05D000917 ORTHO05D000764 2.7e-06 57.0 54 55.6
Nn5g29327 Nelumbo nucifera HOM05D000917 ORTHO05D000764 3.5e-06 56.6 54 51.9
Cpa.g.c37284 Carica papaya HOM05D000917 ORTHO05D000764 4.6e-06 56.2 62 50.0
Lj4A26G46 Lonicera japonica HOM05D000917 ORTHO05D000764 6.0e-06 55.8 62 48.4
MCO09G781 Micromonas commoda HOM05D004514 ORTHO05D005147 6.0e-06 55.8 135 30.4


User provided reference genes

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