Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p40360 Brassica napus HOM05D001200 ORTHO05D009713 1.2e-35 152.5 69 100.0
BolC9t56924H Brassica oleracea HOM05D001200 ORTHO05D009713 1.2e-35 152.5 69 100.0
C07p33440 Brassica napus HOM05D001200 ORTHO05D009713 3.7e-34 147.5 69 97.1
C09p24630 Brassica napus HOM05D001200 ORTHO05D009713 3.7e-34 147.5 69 97.1
C09p40200 Brassica napus HOM05D001200 ORTHO05D009713 3.7e-34 147.5 69 97.1
Sed0023939 Sechium edule HOM05D001200 ORTHO05D009713 7.8e-32 139.8 80 83.8
Gorai.004G082100 Gossypium raimondii HOM05D001200 ORTHO05D009713 9.9e-27 122.9 55 98.2
AL9U11952 Arabidopsis lyrata HOM05D001200 ORTHO05D009713 1.3e-26 122.5 54 98.1
Glyma.18G155300 Glycine max HOM05D001200 ORTHO05D009713 1.7e-26 122.1 82 72.0
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.7e-26 122.1 65 84.6
MELO3C027236.2 Cucumis melo HOM05D001200 ORTHO05D009713 6.4e-26 120.2 55 96.4
HanXRQChr14g0428461 Helianthus annuus HOM05D001200 ORTHO05D009713 2.4e-25 118.2 55 94.5
CARHR258570 Cardamine hirsuta HOM05D001200 ORTHO05D009713 7.1e-25 116.7 55 94.5
Potri.019G014344 Populus trichocarpa HOM05D001200 ORTHO05D009713 1.6e-24 115.5 82 69.5
TPR.G30364 Trifolium pratense HOM05D001200 ORTHO05D009713 3.5e-24 114.4 54 94.4
Gohir.D08G077250 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.7e-23 112.1 55 90.9
arahy.Tifrunner.gnm1.ann1.WH1VZM Arachis hypogaea HOM05D001200 ORTHO05D009713 8.6e-23 109.8 81 70.4
MELO3C029829.2 Cucumis melo HOM05D001200 ORTHO05D009713 8.6e-23 109.8 55 87.3
TPR.G6643 Trifolium pratense HOM05D001044 ORTHO05D008486 3.3e-22 107.8 52 92.3
CAN.G8.22 Capsicum annuum HOM05D001200 ORTHO05D009713 4.7e-21 104.0 55 85.5
Lalb_Chr13g0292811 Lupinus albus HOM05D001200 ORTHO05D009713 8.1e-21 103.2 47 95.7
BolC9t56926H Brassica oleracea HOM05D001200 ORTHO05D009713 1.4e-20 102.4 82 65.9
BolSC45t60910H Brassica oleracea HOM05D001200 ORTHO05D009713 1.8e-20 102.1 82 65.9
ATCG01060 Arabidopsis thaliana HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
BolSC29t60505H Brassica oleracea HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
BolSC35t60703H Brassica oleracea HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
BolSC37t60792H Brassica oleracea HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
BolSC46t60959H Brassica oleracea HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
BolSC49t61142H Brassica oleracea HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
BraSC103t45428Z Brassica rapa HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
BraSC143t45661Z Brassica rapa HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
BraSC179t45775Z Brassica rapa HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
BraSC59t46550Z Brassica rapa HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
CAN.G1526.3 Capsicum annuum HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
CAN.G1526.8 Capsicum annuum HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
CAN.G278.4 Capsicum annuum HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
Migut.D01253 Erythranthe guttata HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
Gohir.1Z049631 Gossypium hirsutum HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
Gohir.A02G134400 Gossypium hirsutum HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
Gohir.A09G046200 Gossypium hirsutum HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
Hma1.2p1_0382F.1_g140210 Hydrangea macrophylla HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
Nn064s42211 Nelumbo nucifera HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
PSO548G0036 Papaver somniferum HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
PGR111G0008 Punica granatum HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
RcHm_v2.0_Chr5g0017221 Rosa chinensis HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
RcHm_v2.0_Chr5g0043041 Rosa chinensis HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
RcHm_v2.0_CPg0502781 Rosa chinensis HOM05D001200 ORTHO05D009713 6.9e-20 100.1 82 64.6
HanXRQChr00c0336g0573651 Helianthus annuus HOM05D001200 ORTHO05D009713 1.2e-19 99.4 82 63.4
HanXRQChr09g0246671 Helianthus annuus HOM05D001200 ORTHO05D009713 1.2e-19 99.4 82 63.4
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 1.2e-19 99.4 82 63.4
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 2.0e-19 98.6 82 63.4
Gohir.D06G133600 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.0e-19 98.6 82 62.2
Nn3g20217 Nelumbo nucifera HOM05D001200 ORTHO05D009713 2.6e-19 98.2 82 62.2
CAN.G965.7 Capsicum annuum HOM05D001200 ORTHO05D009713 3.4e-19 97.8 82 63.4
C04p22670 Brassica napus HOM05D001200 ORTHO05D009713 4.4e-19 97.4 82 62.2
BraSC25t45909Z Brassica rapa HOM05D001200 ORTHO05D009713 5.8e-19 97.1 65 72.3
BolC9t56806H Brassica oleracea HOM05D001200 ORTHO05D009713 7.6e-19 96.7 44 95.5
CAN.G904.13 Capsicum annuum HOM05D001200 ORTHO05D009713 7.6e-19 96.7 46 87.0
DCAR_032537 Daucus carota HOM05D001200 ORTHO05D009713 7.6e-19 96.7 82 63.4
SMO086G0058 Selaginella moellendorffii HOM05D001200 ORTHO05D009713 9.9e-19 96.3 64 73.4
Hund24329 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.3e-18 95.9 82 62.2
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 1.7e-18 95.5 79 63.3
Solyc02g011760.1 Solanum lycopersicum HOM05D001200 ORTHO05D009713 2.2e-18 95.1 49 87.8
Oeu043656.1 Olea europaea HOM05D001200 ORTHO05D009713 2.9e-18 94.7 82 61.0
Gorai.009G377500 Gossypium raimondii HOM05D001200 ORTHO05D009713 3.8e-18 94.4 82 61.0
HanXRQChr02g0038661 Helianthus annuus HOM05D001200 ORTHO05D009713 3.8e-18 94.4 82 59.8
Nn1g00557 Nelumbo nucifera HOM05D001200 ORTHO05D009713 3.8e-18 94.4 82 59.8
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 3.8e-18 94.4 65 70.8
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 3.8e-18 94.4 65 70.8
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 3.8e-18 94.4 65 70.8
HanXRQChr09g0244731 Helianthus annuus HOM05D001200 ORTHO05D009713 4.9e-18 94.0 77 63.6
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 4.9e-18 94.0 78 62.8
CARHR282430 Cardamine hirsuta HOM05D001200 ORTHO05D009713 8.4e-18 93.2 82 62.2
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 8.4e-18 93.2 82 61.0
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 3.2e-17 91.3 77 62.3
Os09g0485201 Oryza sativa ssp. japonica HOM05D001200 ORTHO05D009713 4.2e-17 90.9 82 59.8
arahy.Tifrunner.gnm1.ann1.USFH3V Arachis hypogaea HOM05D001200 ORTHO05D009713 5.4e-17 90.5 81 58.0
Cpa.g.sc63.22 Carica papaya HOM05D001200 ORTHO05D009713 5.4e-17 90.5 82 61.0
HanXRQChr00c0504g0575301 Helianthus annuus HOM05D001200 ORTHO05D009713 5.4e-17 90.5 65 67.7
HanXRQChr08g0213671 Helianthus annuus HOM05D001200 ORTHO05D009713 7.1e-17 90.1 52 75.0
Medtr4g050960 Medicago truncatula HOM05D001200 ORTHO05D009713 1.2e-16 89.4 82 61.0
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 1.6e-16 89.0 65 66.2
C09p40340 Brassica napus HOM05D001200 ORTHO05D009713 2.1e-16 88.6 66 69.7
Lalb_Chr18g0049421 Lupinus albus HOM05D001200 ORTHO05D009713 3.0e-15 84.7 50 78.0
BolC7t43855H Brassica oleracea HOM05D001200 ORTHO05D009713 1.1e-14 82.8 38 94.7
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 1.1e-14 82.8 81 56.8
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 1.1e-14 82.8 81 56.8
BraSC138t45535Z Brassica rapa HOM05D001200 ORTHO05D009713 1.5e-14 82.4 39 89.7
Hund27630 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.5e-14 82.4 81 55.6
Hund28597 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.5e-14 82.4 81 55.6
Gohir.A09G017925 Gossypium hirsutum HOM05D001200 ORTHO05D009713 7.3e-14 80.1 72 58.3
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 9.6e-14 79.7 74 55.4
Hund27883 Selenicereus undatus HOM05D001200 ORTHO05D002731 2.8e-13 78.2 76 56.6
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 2.8e-13 78.2 76 56.6
Hund28851 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.8e-13 78.2 76 56.6
Hund29433 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.8e-13 78.2 76 56.6
Hund30513 Selenicereus undatus HOM05D001200 ORTHO05D002731 2.8e-13 78.2 76 56.6
Hund30643 Selenicereus undatus HOM05D001200 ORTHO05D009713 2.8e-13 78.2 75 57.3
Hund03918 Selenicereus undatus HOM05D001200 ORTHO05D009713 4.8e-13 77.4 43 79.1
Hund10653 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.2e-13 77.0 49 77.6
Nn1g08635 Nelumbo nucifera HOM05D001200 ORTHO05D009713 1.5e-11 72.4 78 51.3
HanXRQChr02g0038701 Helianthus annuus HOM05D001200 ORTHO05D009713 3.4e-11 71.2 70 55.7
Medtr4g026420 Medicago truncatula HOM05D001200 ORTHO05D009713 9.9e-11 69.7 48 68.8
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 6.4e-10 67.0 34 85.3
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 6.4e-10 67.0 34 85.3
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 1.4e-09 65.9 58 60.3
BolSC29t60545H Brassica oleracea HOM05D001200 ORTHO05D009713 1.9e-09 65.5 47 70.2
BolSC35t60693H Brassica oleracea HOM05D001200 ORTHO05D009713 1.9e-09 65.5 47 70.2
BolSC44t60821H Brassica oleracea HOM05D001200 ORTHO05D009713 1.9e-09 65.5 47 70.2
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 1.9e-09 65.5 47 70.2
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 1.9e-09 65.5 47 70.2
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 1.9e-09 65.5 47 70.2
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 1.9e-09 65.5 47 70.2
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 1.9e-09 65.5 47 70.2
HanXRQChr13g0388461 Helianthus annuus HOM05D001200 ORTHO05D009713 1.9e-09 65.5 49 67.3
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 1.9e-09 65.5 47 70.2
TPR.G17259 Trifolium pratense HOM05D000404 ORTHO05D009713 3.2e-09 64.7 48 68.8
GSVIVG01034636001 Vitis vinifera HOM05D001200 ORTHO05D009713 9.3e-09 63.2 46 69.6
HanXRQChr03g0073101 Helianthus annuus HOM05D001200 ORTHO05D002731 1.2e-08 62.8 47 68.1
arahy.Tifrunner.gnm1.ann1.FIPJ9G Arachis hypogaea HOM05D001200 ORTHO05D002731 4.6e-08 60.8 26 96.2
Sed0012820 Sechium edule HOM05D001200 ORTHO05D009713 6.0e-08 60.5 82 47.6
CsaV3_6G032290 Cucumis sativus L. HOM05D001200 ORTHO05D002731 1.0e-07 59.7 32 78.1
Aa31LG10G9900 Aethionema arabicum HOM05D000002 ORTHO05D000001 6.7e-07 57.0 31 77.4


User provided reference genes

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