Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p40340 Brassica napus HOM05D001200 ORTHO05D009713 2.8e-33 144.8 80 100.0
BolSC45t60910H Brassica oleracea HOM05D001200 ORTHO05D009713 4.2e-29 131.0 80 93.8
ATCG01060 Arabidopsis thaliana HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
BolSC29t60505H Brassica oleracea HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
BolSC35t60703H Brassica oleracea HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
BolSC37t60792H Brassica oleracea HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
BolSC46t60959H Brassica oleracea HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
BolSC49t61142H Brassica oleracea HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
BraSC103t45428Z Brassica rapa HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
BraSC143t45661Z Brassica rapa HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
BraSC179t45775Z Brassica rapa HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
BraSC59t46550Z Brassica rapa HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
CAN.G1526.3 Capsicum annuum HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
CAN.G1526.8 Capsicum annuum HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
CAN.G278.4 Capsicum annuum HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
Migut.D01253 Erythranthe guttata HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
Gohir.1Z049631 Gossypium hirsutum HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
Gohir.A02G134400 Gossypium hirsutum HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
Gohir.A09G046200 Gossypium hirsutum HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
Hma1.2p1_0382F.1_g140210 Hydrangea macrophylla HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
Nn064s42211 Nelumbo nucifera HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
PSO548G0036 Papaver somniferum HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
PGR111G0008 Punica granatum HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
RcHm_v2.0_Chr5g0017221 Rosa chinensis HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
RcHm_v2.0_Chr5g0043041 Rosa chinensis HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
RcHm_v2.0_CPg0502781 Rosa chinensis HOM05D001200 ORTHO05D009713 3.6e-28 127.9 80 92.5
BolC9t56926H Brassica oleracea HOM05D001200 ORTHO05D009713 6.1e-28 127.1 80 91.2
HanXRQChr00c0336g0573651 Helianthus annuus HOM05D001200 ORTHO05D009713 6.1e-28 127.1 80 91.2
HanXRQChr09g0246671 Helianthus annuus HOM05D001200 ORTHO05D009713 6.1e-28 127.1 80 91.2
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 6.1e-28 127.1 80 91.2
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 1.0e-27 126.3 80 91.2
Nn3g20217 Nelumbo nucifera HOM05D001200 ORTHO05D009713 1.4e-27 125.9 80 90.0
CAN.G965.7 Capsicum annuum HOM05D001200 ORTHO05D009713 1.8e-27 125.6 80 91.2
C04p22670 Brassica napus HOM05D001200 ORTHO05D009713 2.3e-27 125.2 80 90.0
DCAR_032537 Daucus carota HOM05D001200 ORTHO05D009713 3.9e-27 124.4 80 91.2
Oeu043656.1 Olea europaea HOM05D001200 ORTHO05D009713 6.7e-27 123.6 80 91.2
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 8.8e-27 123.2 77 92.2
HanXRQChr00c0504g0575301 Helianthus annuus HOM05D001200 ORTHO05D009713 8.8e-27 123.2 78 91.0
Gohir.D06G133600 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.1e-26 122.9 80 88.8
HanXRQChr02g0038661 Helianthus annuus HOM05D001200 ORTHO05D009713 1.1e-26 122.9 78 89.7
Gorai.009G377500 Gossypium raimondii HOM05D001200 ORTHO05D009713 2.0e-26 122.1 80 88.8
Nn1g00557 Nelumbo nucifera HOM05D001200 ORTHO05D009713 2.0e-26 122.1 80 87.5
HanXRQChr09g0244731 Helianthus annuus HOM05D001200 ORTHO05D009713 2.5e-26 121.7 75 93.3
CARHR282430 Cardamine hirsuta HOM05D001200 ORTHO05D009713 4.3e-26 120.9 80 90.0
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 4.3e-26 120.9 80 88.8
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 9.7e-26 119.8 76 90.8
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 1.7e-25 119.0 75 92.0
Sed0023939 Sechium edule HOM05D001200 ORTHO05D009713 2.2e-25 118.6 80 76.2
arahy.Tifrunner.gnm1.ann1.USFH3V Arachis hypogaea HOM05D001200 ORTHO05D009713 2.8e-25 118.2 79 86.1
Medtr4g050960 Medicago truncatula HOM05D001200 ORTHO05D009713 6.3e-25 117.1 80 88.8
Glyma.18G155300 Glycine max HOM05D001200 ORTHO05D009713 1.4e-24 115.9 80 71.2
BraSC25t45909Z Brassica rapa HOM05D001200 ORTHO05D009713 1.5e-23 112.5 72 88.9
Cpa.g.sc63.22 Carica papaya HOM05D001200 ORTHO05D009713 2.6e-23 111.7 80 86.2
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 5.9e-23 110.5 79 84.8
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 5.9e-23 110.5 79 84.8
Hund27630 Selenicereus undatus HOM05D001200 ORTHO05D009713 7.7e-23 110.2 79 83.5
Hund28597 Selenicereus undatus HOM05D001200 ORTHO05D009713 7.7e-23 110.2 79 83.5
Os09g0485201 Oryza sativa ssp. japonica HOM05D001200 ORTHO05D009713 1.7e-22 109.0 80 83.8
Gohir.A09G017925 Gossypium hirsutum HOM05D001200 ORTHO05D009713 5.0e-22 107.5 70 90.0
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 6.5e-22 107.1 70 75.7
Hund27883 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.1e-21 106.3 74 86.5
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.1e-21 106.3 74 86.5
Hund28851 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.1e-21 106.3 74 86.5
Hund29433 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.1e-21 106.3 74 86.5
Hund30513 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.1e-21 106.3 74 86.5
Hund30643 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.1e-21 106.3 73 87.7
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 1.4e-21 105.9 70 88.6
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 1.4e-21 105.9 70 88.6
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 1.4e-21 105.9 70 88.6
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 3.2e-21 104.8 72 86.1
Potri.019G014344 Populus trichocarpa HOM05D001200 ORTHO05D009713 3.2e-21 104.8 80 66.2
arahy.Tifrunner.gnm1.ann1.WH1VZM Arachis hypogaea HOM05D001200 ORTHO05D009713 7.9e-20 100.1 79 63.3
BolSC29t60545H Brassica oleracea HOM05D001200 ORTHO05D009713 2.3e-19 98.6 44 97.7
BolSC35t60693H Brassica oleracea HOM05D001200 ORTHO05D009713 2.3e-19 98.6 44 97.7
BolSC44t60821H Brassica oleracea HOM05D001200 ORTHO05D009713 2.3e-19 98.6 44 97.7
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 2.3e-19 98.6 44 97.7
HanXRQChr02g0038701 Helianthus annuus HOM05D001200 ORTHO05D009713 2.3e-19 98.6 68 88.2
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 2.3e-19 98.6 44 97.7
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 2.3e-19 98.6 44 97.7
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 2.3e-19 98.6 44 97.7
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 2.3e-19 98.6 44 97.7
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 2.3e-19 98.6 44 97.7
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 2.3e-19 98.6 44 97.7
Nn1g08635 Nelumbo nucifera HOM05D001200 ORTHO05D009713 2.3e-19 98.6 76 80.3
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 3.9e-19 97.8 70 81.4
GSVIVG01034636001 Vitis vinifera HOM05D001200 ORTHO05D009713 1.5e-18 95.9 43 97.7
TPR.G17259 Trifolium pratense HOM05D000404 ORTHO05D009713 9.7e-18 93.2 44 93.2
SMO086G0058 Selaginella moellendorffii HOM05D001200 ORTHO05D009713 1.7e-17 92.4 77 63.6
Hund24329 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.7e-17 92.4 80 60.0
HanXRQChr13g0388461 Helianthus annuus HOM05D001200 ORTHO05D009713 2.2e-17 92.0 44 93.2
HanXRQChr03g0073101 Helianthus annuus HOM05D001200 ORTHO05D002731 2.8e-17 91.7 44 93.2
Sed0012820 Sechium edule HOM05D001200 ORTHO05D009713 4.8e-17 90.9 80 73.8
C09p40360 Brassica napus HOM05D001200 ORTHO05D009713 1.8e-16 89.0 66 69.7
BolC9t56924H Brassica oleracea HOM05D001200 ORTHO05D009713 1.8e-16 89.0 66 69.7
C07p33440 Brassica napus HOM05D001200 ORTHO05D009713 7.0e-16 87.0 66 69.7
C09p24630 Brassica napus HOM05D001200 ORTHO05D009713 7.0e-16 87.0 66 69.7
C09p40200 Brassica napus HOM05D001200 ORTHO05D009713 7.0e-16 87.0 66 69.7
HanXRQChr14g0428461 Helianthus annuus HOM05D001200 ORTHO05D009713 3.8e-14 81.3 56 71.4
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 6.5e-14 80.5 36 97.2
AL9U11952 Arabidopsis lyrata HOM05D001200 ORTHO05D009713 1.1e-13 79.7 55 72.7
TPR.G30364 Trifolium pratense HOM05D001200 ORTHO05D009713 1.1e-13 79.7 58 70.7
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 1.5e-13 79.3 34 100.0
Gorai.004G082100 Gossypium raimondii HOM05D001200 ORTHO05D009713 2.5e-13 78.6 56 71.4
MELO3C027236.2 Cucumis melo HOM05D001200 ORTHO05D009713 5.5e-13 77.4 56 71.4
BolC2t10595H Brassica oleracea HOM05D001200 ORTHO05D009713 7.2e-13 77.0 35 91.4
CARHR258570 Cardamine hirsuta HOM05D001200 ORTHO05D009713 6.1e-12 73.9 56 69.6
MELO3C029829.2 Cucumis melo HOM05D001200 ORTHO05D009713 1.4e-11 72.8 56 66.1
CAN.G8.22 Capsicum annuum HOM05D001200 ORTHO05D009713 2.3e-11 72.0 56 67.9
TPR.G6643 Trifolium pratense HOM05D001044 ORTHO05D008486 6.7e-11 70.5 80 52.5
Gohir.A05G291020 Gossypium hirsutum HOM05D001163 ORTHO05D001769 1.1e-10 69.7 30 96.7
HanXRQChr08g0211961 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-10 68.6 28 100.0
Gohir.D08G077250 Gossypium hirsutum HOM05D001200 ORTHO05D009713 4.4e-10 67.8 56 64.3
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 6.3e-09 63.9 30 90.0
Lalb_Chr13g0292811 Lupinus albus HOM05D001200 ORTHO05D009713 2.4e-08 62.0 48 64.6
HanXRQChr08g0213671 Helianthus annuus HOM05D001200 ORTHO05D009713 1.6e-07 59.3 55 56.4
Solyc02g011760.1 Solanum lycopersicum HOM05D001200 ORTHO05D009713 3.5e-07 58.2 50 64.0
CAN.G904.13 Capsicum annuum HOM05D001200 ORTHO05D009713 6.5e-06 53.9 47 57.4
Medtr6g080310 Medicago truncatula HOM05D001200 ORTHO05D002731 6.5e-06 53.9 30 76.7


User provided reference genes

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