Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p39010 Brassica napus HOM05D000604 ORTHO05D004856 4.3e-39 164.1 77 100.0
BolC9t56781H Brassica oleracea HOM05D000604 ORTHO05D004856 4.3e-39 164.1 77 100.0
AL7G34450 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 5.5e-26 120.6 80 73.8
Carub.0007s2157 Capsella rubella HOM05D000604 ORTHO05D004856 1.2e-25 119.4 80 75.0
AT4G19610 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 3.5e-25 117.9 81 75.3
Thhalv10024436m.g Eutrema salsugineum HOM05D000604 ORTHO05D004856 7.9e-25 116.7 80 72.5
CARHR226400 Cardamine hirsuta HOM05D000604 ORTHO05D004856 6.7e-24 113.6 78 71.8
Sp7g18180 Schrenkiella parvula HOM05D000604 ORTHO05D004856 7.4e-23 110.2 74 74.3
Aa31LG6G2170 Aethionema arabicum HOM05D000604 ORTHO05D004856 2.4e-21 105.1 70 75.7
AL6G15620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 9.0e-21 103.2 76 69.7
CARHR207550 Cardamine hirsuta HOM05D000604 ORTHO05D004856 1.2e-20 102.8 69 69.6
BcaNung01771 Brassica carinata HOM05D000604 ORTHO05D004856 5.9e-20 100.5 71 69.0
BcaC09g51398 Brassica carinata HOM05D000604 ORTHO05D004856 1.7e-19 99.0 71 70.4
A01p11470 Brassica napus HOM05D000604 ORTHO05D004856 1.7e-19 99.0 71 70.4
C01p13560 Brassica napus HOM05D000604 ORTHO05D004856 1.7e-19 99.0 71 70.4
BolC1t01328H Brassica oleracea HOM05D000604 ORTHO05D004856 1.7e-19 99.0 71 70.4
BraA01t01094Z Brassica rapa HOM05D000604 ORTHO05D004856 1.7e-19 99.0 71 70.4
AL6G21620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 5.0e-19 97.4 71 70.4
THA.LOC104806210 Tarenaya hassleriana HOM05D000604 ORTHO05D004856 8.5e-19 96.7 74 66.2
AT5G08695 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 4.6e-17 90.9 70 65.7
Dinv05871 Davidia involucrata HOM05D000604 ORTHO05D004856 4.6e-17 90.9 76 59.2
DCAR_007039 Daucus carota HOM05D000604 ORTHO05D004856 6.1e-17 90.5 72 59.7
TAR371G0160 Trochodendron aralioides HOM05D000604 ORTHO05D004856 6.1e-17 90.5 73 63.0
CSS0014014 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004856 7.9e-17 90.1 73 60.3
Actinidia13225 Actinidia chinensis HOM05D000604 ORTHO05D004856 1.0e-16 89.7 76 61.8
Cfa008710 Carpinus fangiana HOM05D000604 ORTHO05D004856 1.8e-16 89.0 73 57.5
Cpa.g.sc192.5 Carica papaya HOM05D000604 ORTHO05D004856 3.0e-16 88.2 76 60.5
Manes.13G073400 Manihot esculenta HOM05D000604 ORTHO05D004856 3.0e-16 88.2 72 61.1
TWI73G0328 Tripterygium wilfordii HOM05D000604 ORTHO05D004856 3.0e-16 88.2 73 58.9
Gohir.A10G046400 Gossypium hirsutum HOM05D000604 ORTHO05D004856 3.9e-16 87.8 73 60.3
Gohir.D10G047700 Gossypium hirsutum HOM05D000604 ORTHO05D004856 3.9e-16 87.8 73 60.3
Gorai.011G050800 Gossypium raimondii HOM05D000604 ORTHO05D004856 3.9e-16 87.8 73 60.3
CiPaw.04G077700 Carya illinoinensis HOM05D000604 ORTHO05D004856 5.1e-16 87.4 73 57.5
Ciclev10017571m.g Citrus clementina HOM05D000604 ORTHO05D004856 5.1e-16 87.4 73 63.0
Haze_11719 Corylus avellana HOM05D000604 ORTHO05D004856 5.1e-16 87.4 73 56.2
PSO017G6514 Papaver somniferum HOM05D000604 ORTHO05D004856 5.1e-16 87.4 72 59.7
PSO724G1052 Papaver somniferum HOM05D000604 ORTHO05D004856 5.1e-16 87.4 72 59.7
Hma1.2p1_0589F.1_g184700 Hydrangea macrophylla HOM05D000604 ORTHO05D004856 8.7e-16 86.7 76 60.5
PSO063G6978 Papaver somniferum HOM05D000604 ORTHO05D004856 1.1e-15 86.3 72 58.3
ClCG07G014770 Citrullus lanatus HOM05D000604 ORTHO05D004856 1.5e-15 85.9 73 60.3
PSO135G0531 Papaver somniferum HOM05D000604 ORTHO05D004856 1.5e-15 85.9 72 58.3
QL06p028587 Quercus lobata HOM05D000604 ORTHO05D004856 2.5e-15 85.1 73 57.5
Nn1g08454 Nelumbo nucifera HOM05D000604 ORTHO05D004856 3.3e-15 84.7 71 59.2
PGR119G0174 Punica granatum HOM05D000604 ORTHO05D004856 4.3e-15 84.3 75 56.0
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 4.3e-15 84.3 73 60.3
CDE05G3452 Ceratophyllum demersum HOM05D000604 ORTHO05D004856 5.7e-15 84.0 73 61.6
MELO3C016321.2 Cucumis melo HOM05D000604 ORTHO05D004856 5.7e-15 84.0 73 58.9
COL.COLO4_30935 Corchorus olitorius HOM05D000604 ORTHO05D004856 7.4e-15 83.6 73 57.5
Sc24g0002870 Simmondsia chinensis HOM05D000604 ORTHO05D004856 9.7e-15 83.2 72 55.6
CsaV3_4G006300 Cucumis sativus L. HOM05D000604 ORTHO05D004856 1.3e-14 82.8 73 56.2
Thecc.06G136200 Theobroma cacao HOM05D000604 ORTHO05D004856 1.3e-14 82.8 71 59.2
vmacro11016 Vaccinium macrocarpon HOM05D000604 ORTHO05D004856 1.3e-14 82.8 72 59.7
Eucgr.K02063 Eucalyptus grandis HOM05D000604 ORTHO05D004856 1.6e-14 82.4 71 63.4
CANSAT56G2059 Cannabis sativa HOM05D000604 ORTHO05D004856 2.8e-14 81.6 72 59.7
SMO301G0078 Selaginella moellendorffii HOM05D000604 ORTHO05D004856 2.8e-14 81.6 68 55.9
Solyc02g081940.3 Solanum lycopersicum HOM05D000604 ORTHO05D004856 2.8e-14 81.6 82 48.8
Sopen02g026570 Solanum pennellii HOM05D000604 ORTHO05D004856 2.8e-14 81.6 82 48.8
PGSC0003DMG400007320 Solanum tuberosum HOM05D000604 ORTHO05D004856 2.8e-14 81.6 82 48.8
GSVIVG01012163001 Vitis vinifera HOM05D000604 ORTHO05D004856 2.8e-14 81.6 73 54.8
HanXRQChr04g0119081 Helianthus annuus HOM05D000604 ORTHO05D004856 3.7e-14 81.3 73 57.5
MBI18_g32818_MAGBIO Magnolia biondii HOM05D000604 ORTHO05D004856 3.7e-14 81.3 74 56.8
arahy.Tifrunner.gnm1.ann1.GY8SZ4 Arachis hypogaea HOM05D000604 ORTHO05D004856 4.8e-14 80.9 70 58.6
Duzib235G1121 Durio zibethinus HOM05D000604 ORTHO05D004856 4.8e-14 80.9 73 56.2
VMungo0647G0785 Vigna mungo HOM05D000604 ORTHO05D004856 6.3e-14 80.5 72 55.6
Lsat_1_v5_gn_7_29360 Lactuca sativa HOM05D000604 ORTHO05D004856 8.2e-14 80.1 73 54.8
Nitab4.5_0000632g0160 Nicotiana tabacum HOM05D000604 ORTHO05D004856 8.2e-14 80.1 76 51.3
Nitab4.5_0000844g0350 Nicotiana tabacum HOM05D000604 ORTHO05D004856 8.2e-14 80.1 76 51.3
Peaxi162Scf00036g01624 Petunia axillaris HOM05D000604 ORTHO05D004856 8.2e-14 80.1 73 52.1
Phvul.001G070900 Phaseolus vulgaris HOM05D000604 ORTHO05D004856 1.1e-13 79.7 75 53.3
arahy.Tifrunner.gnm1.ann1.2H30NS Arachis hypogaea HOM05D000604 ORTHO05D004856 1.8e-13 79.0 69 58.0
Lj1g0003644 Lotus japonicus HOM05D001476 ORTHO05D004856 1.8e-13 79.0 74 55.4
TPR.G6171 Trifolium pratense HOM05D000604 ORTHO05D004856 1.8e-13 79.0 72 55.6
AUR62039584 Chenopodium quinoa HOM05D000604 ORTHO05D004856 3.1e-13 78.2 72 54.2
Cc09_g04940 Coffea canephora HOM05D000604 ORTHO05D004856 3.1e-13 78.2 73 52.1
Glyma.14G154500 Glycine max HOM05D000604 ORTHO05D004856 3.1e-13 78.2 72 56.9
Lalb_Chr19g0132151 Lupinus albus HOM05D000604 ORTHO05D004856 3.1e-13 78.2 76 53.9
Medtr7g094660 Medicago truncatula HOM05D000604 ORTHO05D004856 3.1e-13 78.2 70 55.7
SHI01960 Sapria himalayana HOM05D000604 ORTHO05D004856 3.1e-13 78.2 72 55.6
EL10Ac2g02981 Beta vulgaris HOM05D000604 ORTHO05D004856 4.1e-13 77.8 71 54.9
MSTRG.7607 Avicennia marina HOM05D000604 ORTHO05D004856 5.3e-13 77.4 76 51.3
Migut.M00474 Erythranthe guttata HOM05D000604 ORTHO05D004856 5.3e-13 77.4 72 52.8
Migut.M00477 Erythranthe guttata HOM05D000604 ORTHO05D004856 5.3e-13 77.4 72 52.8
Medtr7g096260 Medicago truncatula HOM05D000604 ORTHO05D004856 6.9e-13 77.0 68 55.9
Rhsim02G0169700 Rhododendron simsii HOM05D000604 ORTHO05D004856 6.9e-13 77.0 76 51.3
unitig_37.g13055 Utricularia gibba HOM05D000604 ORTHO05D004856 9.1e-13 76.6 70 52.9
ECA236G3264 Erigeron canadensis HOM05D000604 ORTHO05D004856 1.2e-12 76.3 73 52.1
Lj1g0003482 Lotus japonicus HOM05D000604 ORTHO05D004856 1.2e-12 76.3 72 54.2
Migut.O00375 Erythranthe guttata HOM05D000604 ORTHO05D004856 1.5e-12 75.9 72 54.2
Glyma.13G032300 Glycine max HOM05D000604 ORTHO05D004856 1.5e-12 75.9 72 54.2
Prupe.4G106000 Prunus persica HOM05D000604 ORTHO05D004856 1.5e-12 75.9 73 52.1
AagrBONN_evm.TU.Sc2ySwM_117.1847 Anthoceros agrestis HOM05D000604 ORTHO05D004856 2.6e-12 75.1 77 49.4
Migut.B01297 Erythranthe guttata HOM05D000604 ORTHO05D004856 2.6e-12 75.1 76 50.0
Migut.M00563 Erythranthe guttata HOM05D000604 ORTHO05D004856 2.6e-12 75.1 72 51.4
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 3.4e-12 74.7 73 52.1
Aqoxy5G00580 Aquilegia oxysepala HOM05D000604 ORTHO05D004856 3.4e-12 74.7 72 54.2
Pp3c7_9260 Physcomitrium patens HOM05D000604 ORTHO05D004856 3.4e-12 74.7 74 55.4
Sabra03G0108600 Salix brachista HOM05D000604 ORTHO05D004856 1.3e-11 72.8 76 46.1
FAN25G0854 Fragaria x ananassa HOM05D000604 ORTHO05D004856 1.7e-11 72.4 70 50.0
SalBow8G1358 Salvia bowleyana HOM05D000604 ORTHO05D004856 2.9e-11 71.6 74 51.4
Mapoly0030s0107 Marchantia polymorpha HOM05D000604 ORTHO05D004856 5.0e-11 70.9 72 52.8
Medtr7g094670 Medicago truncatula HOM05D001476 ORTHO05D002681 6.5e-11 70.5 70 52.9
RcHm_v2.0_Chr5g0019271 Rosa chinensis HOM05D000604 ORTHO05D004856 6.5e-11 70.5 70 50.0
MD10G1238300 Malus domestica HOM05D000604 ORTHO05D004856 8.5e-11 70.1 73 46.6
Ca_08573_v3 Cicer arietinum L. HOM05D000604 ORTHO05D004856 1.1e-10 69.7 71 52.1
FvH4_3g11840 Fragaria vesca HOM05D000604 ORTHO05D004856 1.1e-10 69.7 70 48.6
Potri.003G149600 Populus trichocarpa HOM05D000604 ORTHO05D004856 1.4e-10 69.3 76 43.4
Zm00001eb430700 Zea mays HOM05D000604 ORTHO05D004856 2.5e-10 68.6 70 51.4
Zm00001eb442350 Zea mays HOM05D000604 ORTHO05D004856 2.5e-10 68.6 70 51.4
FAN21G2591 Fragaria x ananassa HOM05D000604 ORTHO05D004856 3.2e-10 68.2 70 47.1
FAN16G0408 Fragaria x ananassa HOM05D000604 ORTHO05D004856 4.2e-10 67.8 69 47.8
Oeu014816.1 Olea europaea HOM05D000604 ORTHO05D004856 5.5e-10 67.4 76 47.4
AUR62006166 Chenopodium quinoa HOM05D000604 ORTHO05D004856 2.7e-09 65.1 71 46.5
AUR62026050 Chenopodium quinoa HOM05D000604 ORTHO05D004856 2.7e-09 65.1 71 46.5
Ah.10g032170 Amaranthus hybridus HOM05D000604 ORTHO05D004856 1.4e-08 62.8 70 47.1
Lj2A328T81 Lonicera japonica HOM05D000604 ORTHO05D004856 1.8e-08 62.4 53 62.3
Hund20696 Selenicereus undatus HOM05D000604 ORTHO05D004856 2.3e-08 62.0 33 87.9
Os04g0611500 Oryza sativa ssp. japonica HOM05D000604 ORTHO05D004856 5.1e-08 60.8 70 50.0
Atru.BG.155.p Acer truncatum HOM05D000604 ORTHO05D004856 3.3e-07 58.2 39 69.2
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 9.7e-07 56.6 81 44.4
Medtr2g018390 Medicago truncatula HOM05D000604 ORTHO05D004856 9.7e-07 56.6 33 72.7
MCO07G708 Micromonas commoda HOM05D000604 ORTHO05D004856 2.2e-06 55.5 79 43.0
Ah.04g154050 Amaranthus hybridus HOM05D000604 ORTHO05D004856 3.7e-06 54.7 33 72.7


User provided reference genes

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