Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21001 Brassica carinata HOM05D001678 ORTHO05D001698 6.0e-98 360.9 193 100.0
C09p36790 Brassica napus HOM05D001678 ORTHO05D001698 6.0e-98 360.9 193 100.0
A08p16470 Brassica napus HOM05D001678 ORTHO05D001698 1.1e-96 356.7 193 98.4
BolC9t56511H Brassica oleracea HOM05D001678 ORTHO05D001698 3.9e-89 331.6 180 99.4
BraA05t21006Z Brassica rapa HOM05D001678 ORTHO05D001698 9.6e-88 327.0 180 97.8
BraA04t16704Z Brassica rapa HOM05D001678 ORTHO05D001698 1.6e-87 326.2 180 97.2
BolC3t21566H Brassica oleracea HOM05D001678 ORTHO05D001698 1.6e-82 309.7 180 91.1
A05p21020 Brassica napus HOM05D001678 ORTHO05D001698 1.9e-75 286.2 158 98.1
AL1G56710 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 1.0e-60 237.3 206 66.0
BcaC06g35122 Brassica carinata HOM05D001678 ORTHO05D001698 5.0e-60 235.0 123 96.7
A09p15840 Brassica napus HOM05D001678 ORTHO05D001698 4.7e-58 228.4 123 95.1
Carub.0011s0001 Capsella rubella HOM05D001678 ORTHO05D001698 1.3e-55 220.3 205 62.9
Thhalv10027019m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.8e-54 216.5 206 62.6
A09p37990 Brassica napus HOM05D001678 ORTHO05D001698 5.0e-52 208.4 196 57.1
BraA09t39310Z Brassica rapa HOM05D001678 ORTHO05D001698 5.0e-52 208.4 196 57.1
BcaB02g11255 Brassica carinata HOM05D001678 ORTHO05D001698 1.0e-44 184.1 125 80.0
Thhalv10029209m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.1e-43 180.6 206 55.8
BcaNung00414 Brassica carinata HOM05D001678 ORTHO05D001698 1.5e-43 180.3 180 58.3
Sp6g02750 Schrenkiella parvula HOM05D001678 ORTHO05D001698 4.0e-41 172.2 205 51.2
Sp7g09060 Schrenkiella parvula HOM05D001678 ORTHO05D001698 2.4e-38 162.9 125 69.6
BcaC04g21004 Brassica carinata HOM05D001678 ORTHO05D001698 6.1e-34 148.3 72 100.0
BcaB05g23433 Brassica carinata HOM05D001678 ORTHO05D001698 8.0e-34 147.9 157 54.8
BcaC01g01504 Brassica carinata HOM05D001678 ORTHO05D001698 1.8e-33 146.7 86 90.7
Thhalv10029423m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.8e-30 136.7 207 40.6
BcaC01g04115 Brassica carinata HOM05D001678 ORTHO05D001698 1.6e-29 133.7 197 42.6
BolC2t07565H Brassica oleracea HOM05D001678 ORTHO05D001698 1.6e-29 133.7 206 40.8
BolC3t16754H Brassica oleracea HOM05D001678 ORTHO05D001698 1.6e-29 133.7 197 42.6
BolC2t11883H Brassica oleracea HOM05D001678 ORTHO05D001698 2.0e-29 133.3 175 48.0
C02p14410 Brassica napus HOM05D001678 ORTHO05D001698 1.3e-28 130.6 175 44.6
BcaC09g49863 Brassica carinata HOM05D001678 ORTHO05D001698 1.7e-28 130.2 198 41.9
C02p58150 Brassica napus HOM05D001678 ORTHO05D001698 1.7e-28 130.2 175 47.4
Carub.0006s3595 Capsella rubella HOM05D001678 ORTHO05D001698 8.6e-28 127.9 209 37.8
Carub.0008s1510 Capsella rubella HOM05D001678 ORTHO05D001698 8.6e-28 127.9 209 37.8
BolC3t20376H Brassica oleracea HOM05D001678 ORTHO05D001698 1.1e-27 127.5 198 43.9
Carub.0001s3536 Capsella rubella HOM05D001678 ORTHO05D001698 3.3e-27 125.9 89 78.7
Thhalv10005278m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.6e-26 123.6 196 40.8
Thhalv10024061m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.0e-25 120.9 133 54.9
BraA10t43304Z Brassica rapa HOM05D001678 ORTHO05D001698 1.4e-25 120.6 190 37.4
Thhalv10023821m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 3.1e-25 119.4 192 40.1
Thhalv10022272m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 5.2e-25 118.6 197 39.1
C02p49350 Brassica napus HOM05D001678 ORTHO05D001698 6.8e-25 118.2 167 47.3
BraA01t03239Z Brassica rapa HOM05D001678 ORTHO05D001698 6.8e-25 118.2 198 38.4
A10p12020 Brassica napus HOM05D001678 ORTHO05D001698 1.2e-24 117.5 190 36.8
C05p38790 Brassica napus HOM05D001678 ORTHO05D001698 2.0e-24 116.7 180 45.6
BolC5t32619H Brassica oleracea HOM05D001678 ORTHO05D001698 2.0e-24 116.7 180 45.6
AT2G29880 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 3.4e-24 115.9 197 38.6
BcaC07g37804 Brassica carinata HOM05D001678 ORTHO05D001698 9.8e-24 114.4 201 38.3
BolC8t48193H Brassica oleracea HOM05D001678 ORTHO05D001698 9.8e-24 114.4 201 38.3
A01p29830 Brassica napus HOM05D001678 ORTHO05D001698 1.3e-23 114.0 199 37.2
C07p02270 Brassica napus HOM05D001678 ORTHO05D001698 1.3e-23 114.0 180 45.6
BolC7t40637H Brassica oleracea HOM05D001678 ORTHO05D001698 1.3e-23 114.0 180 45.6
BraA01t03111Z Brassica rapa HOM05D001678 ORTHO05D001698 1.3e-23 114.0 199 37.2
C05p18830 Brassica napus HOM05D001678 ORTHO05D001698 1.7e-23 113.6 180 45.0
C02p32520 Brassica napus HOM05D001678 ORTHO05D001698 2.2e-23 113.2 201 37.8
Carub.0007s0094 Capsella rubella HOM05D001678 ORTHO05D001698 1.1e-22 110.9 203 36.9
Carub.0002s1509 Capsella rubella HOM05D001678 ORTHO05D001698 5.4e-22 108.6 202 36.1
Carub.0007s2622 Capsella rubella HOM05D001678 ORTHO05D001698 5.4e-22 108.6 202 36.1
Thhalv10029159m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 7.0e-22 108.2 197 36.0
BcaC06g36603 Brassica carinata HOM05D001678 ORTHO05D001698 1.6e-21 107.1 119 50.4
BolC2t11022H Brassica oleracea HOM05D001678 ORTHO05D001698 2.7e-21 106.3 206 35.0
A09p28080 Brassica napus HOM05D001678 ORTHO05D001698 4.6e-21 105.5 206 34.0
BcaC05g25931 Brassica carinata HOM05D001678 ORTHO05D001698 1.0e-20 104.4 146 45.9
BolC5t31786H Brassica oleracea HOM05D001678 ORTHO05D001698 3.0e-20 102.8 201 37.3
Thhalv10002177m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 5.0e-20 102.1 196 38.3
AT5G27260 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 8.6e-20 101.3 200 34.5
BraA06t25821Z Brassica rapa HOM05D001678 ORTHO05D001698 3.3e-19 99.4 202 33.7
MD03G1206200 Malus domestica HOM05D001678 ORTHO05D001698 9.5e-19 97.8 218 33.0
AL1G65820 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 2.1e-18 96.7 173 38.2
C07p32060 Brassica napus HOM05D001678 ORTHO05D001698 3.6e-18 95.9 191 35.1
MD06G1083900 Malus domestica HOM05D001678 ORTHO05D001698 6.2e-18 95.1 218 35.3
BcaB08g36227 Brassica carinata HOM05D001678 ORTHO05D001698 2.3e-17 93.2 93 52.7
A03p43320 Brassica napus HOM05D001678 ORTHO05D001698 4.0e-17 92.4 171 35.7
BcaC06g34160 Brassica carinata HOM05D001678 ORTHO05D001698 5.2e-17 92.0 191 34.6
Thhalv10029365m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 2.0e-16 90.1 165 35.8
Prupe.1G229800 Prunus persica HOM05D001678 ORTHO05D001698 9.8e-16 87.8 220 30.9
BcaB01g02681 Brassica carinata HOM05D001678 ORTHO05D001698 2.2e-15 86.7 200 34.0
C06p18860 Brassica napus HOM05D001678 ORTHO05D001698 1.9e-14 83.6 131 38.9
BolC6t37091H Brassica oleracea HOM05D001678 ORTHO05D001698 1.9e-14 83.6 131 38.9
Carub.0006s2679 Capsella rubella HOM05D001678 ORTHO05D001698 1.9e-14 83.6 193 32.6
AL5G20810 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 2.4e-14 83.2 136 39.0
Prupe.6G020000 Prunus persica HOM05D001678 ORTHO05D001698 9.2e-14 81.3 212 33.5
C07p02260 Brassica napus HOM05D001678 ORTHO05D001698 1.6e-13 80.5 93 48.4
AL4G17900 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 2.1e-13 80.1 169 37.3
AL4G17920 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 2.1e-13 80.1 169 37.3
Atru.chr7.11 Acer truncatum HOM05D000034 ORTHO05D000037 2.7e-13 79.7 224 31.2
BolC7t40636H Brassica oleracea HOM05D001678 ORTHO05D001698 2.7e-13 79.7 93 47.3
Lj3C1037T5 Lonicera japonica HOM05D001678 ORTHO05D001698 3.5e-13 79.3 203 32.0
Lj6A398T11 Lonicera japonica HOM05D001678 ORTHO05D001698 3.5e-13 79.3 203 32.0
AL4G17660 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 6.0e-13 78.6 168 36.9
Prupe.2G168600 Prunus persica HOM05D001678 ORTHO05D001698 6.0e-13 78.6 219 33.8
BraA10t43205Z Brassica rapa HOM05D001678 ORTHO05D001698 1.0e-12 77.8 136 41.2
BcaC05g27161 Brassica carinata HOM05D001678 ORTHO05D001698 1.3e-12 77.4 151 35.8
A10p11120 Brassica napus HOM05D001678 ORTHO05D001698 1.7e-12 77.0 136 41.2
Atru.chr12.2214 Acer truncatum HOM05D001678 ORTHO05D001698 2.3e-12 76.6 215 31.6
AT5G35540 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 6.6e-12 75.1 195 30.8
C05p30510 Brassica napus HOM05D001678 ORTHO05D032997 1.1e-11 74.3 153 33.3
Prupe.6G133700 Prunus persica HOM05D001678 ORTHO05D001698 1.1e-11 74.3 188 31.9
Oeu039328.1 Olea europaea HOM05D001678 ORTHO05D001698 2.5e-11 73.2 192 32.3
BolC5t32145H Brassica oleracea HOM05D001678 ORTHO05D001698 4.3e-11 72.4 96 44.8
C05p34070 Brassica napus HOM05D000385 ORTHO05D000269 7.3e-11 71.6 96 46.9
AL2G16050 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 9.5e-11 71.2 193 28.0
MD12G1017200 Malus domestica HOM05D001678 ORTHO05D001698 2.1e-10 70.1 191 34.0
A05p20310 Brassica napus HOM05D000385 ORTHO05D000269 8.1e-10 68.2 95 43.2
Prupe.8G061600 Prunus persica HOM05D001678 ORTHO05D001698 8.1e-10 68.2 196 30.6
Sp2g04200 Schrenkiella parvula HOM05D001678 ORTHO05D001698 8.1e-10 68.2 190 26.3
A04p22040 Brassica napus HOM05D001678 ORTHO05D001698 1.1e-09 67.8 78 44.9
C09p55800 Brassica napus HOM05D001678 ORTHO05D001698 1.1e-09 67.8 78 44.9
FAN02G2409 Fragaria x ananassa HOM05D001678 ORTHO05D001698 1.1e-09 67.8 193 30.1
Lj1A169T8 Lonicera japonica HOM05D001678 ORTHO05D001698 1.1e-09 67.8 182 31.9
BcaC01g00739 Brassica carinata HOM05D001678 ORTHO05D001698 1.4e-09 67.4 83 53.0
A01p28360 Brassica napus HOM05D001678 ORTHO05D001698 1.8e-09 67.0 138 34.8
Lj2A433T12 Lonicera japonica HOM05D001678 ORTHO05D001698 1.8e-09 67.0 196 29.6
AL1G65810 Arabidopsis lyrata HOM05D000034 ORTHO05D001698 4.0e-09 65.9 146 32.9
A01p29340 Brassica napus HOM05D001678 ORTHO05D001698 4.0e-09 65.9 53 52.8
C01p37100 Brassica napus HOM05D001678 ORTHO05D001698 4.0e-09 65.9 53 52.8
C01p37120 Brassica napus HOM05D001678 ORTHO05D001698 4.0e-09 65.9 53 52.8
BolC1t03674H Brassica oleracea HOM05D001678 ORTHO05D001698 4.0e-09 65.9 53 52.8
BolC1t03676H Brassica oleracea HOM05D001678 ORTHO05D001698 4.0e-09 65.9 53 52.8
BraA01t03066Z Brassica rapa HOM05D001678 ORTHO05D001698 4.0e-09 65.9 53 52.8
Prupe.7G010100 Prunus persica HOM05D001678 ORTHO05D001698 4.0e-09 65.9 208 28.8
FvH4_4g17330 Fragaria vesca HOM05D001678 ORTHO05D001698 5.2e-09 65.5 204 29.9
C09p07340 Brassica napus HOM05D001678 ORTHO05D001698 6.8e-09 65.1 139 33.1
Thhalv10017633m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 6.8e-09 65.1 196 29.1
FAN12G1326 Fragaria x ananassa HOM05D001678 ORTHO05D001698 6.8e-09 65.1 201 30.3
Atru.chr13.2422 Acer truncatum HOM05D001678 ORTHO05D001698 8.9e-09 64.7 208 28.8
FAN23G0320 Fragaria x ananassa HOM05D001678 ORTHO05D001698 8.9e-09 64.7 200 30.5
Prupe.1G130600 Prunus persica HOM05D001678 ORTHO05D001698 1.2e-08 64.3 187 29.4
RcHm_v2.0_Chr3g0476481 Rosa chinensis HOM05D001678 ORTHO05D001698 1.2e-08 64.3 200 31.5
Thhalv10015362m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.5e-08 63.9 137 37.2
Prupe.1G177900 Prunus persica HOM05D001678 ORTHO05D001698 1.5e-08 63.9 196 29.1
CARHR052440 Cardamine hirsuta HOM05D001678 ORTHO05D001698 2.0e-08 63.5 204 26.0
Prupe.4G156100 Prunus persica HOM05D001678 ORTHO05D001698 2.0e-08 63.5 220 27.3
AT5G28820 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 2.6e-08 63.2 89 38.2
BolC9t53596H Brassica oleracea HOM05D001678 ORTHO05D001698 2.6e-08 63.2 138 33.3
BcaC03g17938 Brassica carinata HOM05D001678 ORTHO05D001698 3.4e-08 62.8 154 35.1
BolC7t41455H Brassica oleracea HOM05D001678 ORTHO05D001698 3.4e-08 62.8 129 35.7
Oeu029512.1 Olea europaea HOM05D001678 ORTHO05D001698 5.8e-08 62.0 200 27.5
A01p29330 Brassica napus HOM05D001678 ORTHO05D001698 7.6e-08 61.6 191 25.7
BraA01t03065Z Brassica rapa HOM05D001678 ORTHO05D001698 7.6e-08 61.6 191 25.7
Medtr1g106600 Medicago truncatula HOM05D001678 ORTHO05D001698 7.6e-08 61.6 215 27.9
Medtr1g106608 Medicago truncatula HOM05D001678 ORTHO05D001698 7.6e-08 61.6 215 27.9
Medtr6g018520 Medicago truncatula HOM05D001678 ORTHO05D001698 7.6e-08 61.6 215 27.9
Medtr6g025650 Medicago truncatula HOM05D001678 ORTHO05D001698 7.6e-08 61.6 215 27.9
Oeu035952.1 Olea europaea HOM05D001678 ORTHO05D001698 9.9e-08 61.2 190 30.5
CARHR004570 Cardamine hirsuta HOM05D001678 ORTHO05D001698 2.2e-07 60.1 132 31.8
Prupe.3G105400 Prunus persica HOM05D001678 ORTHO05D001698 2.2e-07 60.1 198 27.3
PSO764G0063 Papaver somniferum HOM05D001678 ORTHO05D001698 2.9e-07 59.7 182 30.8
C04p25210 Brassica napus HOM05D039589 ORTHO05D001698 4.9e-07 58.9 119 34.5
Carub.0004s0707 Capsella rubella HOM05D001678 ORTHO05D001698 4.9e-07 58.9 138 35.5
Thhalv10010996m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 4.9e-07 58.9 176 28.4
Glyma.18G175000 Glycine max HOM05D001678 ORTHO05D001698 1.1e-06 57.8 225 24.9
Atru.chr9.929 Acer truncatum HOM05D001678 ORTHO05D001698 1.4e-06 57.4 97 40.2
Thhalv10017744m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.9e-06 57.0 83 44.6
Glyma.10G131100 Glycine max HOM05D001678 ORTHO05D001698 1.9e-06 57.0 219 26.9
C07p10100 Brassica napus HOM05D001678 ORTHO05D001698 2.4e-06 56.6 126 33.3
Carub.0006s2633 Capsella rubella HOM05D001678 ORTHO05D001698 3.2e-06 56.2 106 33.0
BcaB01g00604 Brassica carinata HOM05D001678 ORTHO05D001698 4.1e-06 55.8 114 34.2
Glyma.10G211500 Glycine max HOM05D001678 ORTHO05D001698 4.1e-06 55.8 225 24.4
Glyma.17G190600 Glycine max HOM05D001678 ORTHO05D001698 4.1e-06 55.8 214 29.9
Glyma.20G169100 Glycine max HOM05D001678 ORTHO05D001698 4.1e-06 55.8 225 24.4
FvH4_6g20420 Fragaria vesca HOM05D000034 ORTHO05D001698 5.4e-06 55.5 207 28.5
Glyma.07G133600 Glycine max HOM05D001678 ORTHO05D001698 5.4e-06 55.5 206 27.2
Medtr3g097540 Medicago truncatula HOM05D001678 ORTHO05D001698 5.4e-06 55.5 210 26.7
A06p22390 Brassica napus HOM05D001678 ORTHO05D001698 9.2e-06 54.7 27 92.6


User provided reference genes

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