Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21010 Brassica carinata HOM05D005673 ORTHO05D007081 1.2e-144 516.5 259 100.0
C09p36690 Brassica napus HOM05D005673 ORTHO05D007081 1.2e-144 516.5 259 100.0
BolC9t56500H Brassica oleracea HOM05D005673 ORTHO05D007081 1.2e-144 516.5 259 100.0
A09p28870 Brassica napus HOM05D005673 ORTHO05D007081 1.1e-134 483.4 259 95.4
BcaB01g01447 Brassica carinata HOM05D005673 ORTHO05D007081 4.9e-127 458.0 263 88.6
Sp6g07430 Schrenkiella parvula HOM05D005673 ORTHO05D007081 6.8e-121 437.6 262 84.7
AT4G10090 Arabidopsis thaliana HOM05D005673 ORTHO05D007081 2.0e-120 436.0 262 84.7
CARHR261110 Cardamine hirsuta HOM05D005673 ORTHO05D007081 2.0e-120 436.0 262 85.5
AL6G43874 Arabidopsis lyrata HOM05D005673 ORTHO05D007081 2.6e-120 435.6 262 84.4
Carub.0006s2866 Capsella rubella HOM05D005673 ORTHO05D007081 1.3e-119 433.3 263 84.4
Thhalv10028887m.g Eutrema salsugineum HOM05D005673 ORTHO05D007081 2.2e-119 432.6 261 85.8
Aa31LG9G11910 Aethionema arabicum HOM05D005673 ORTHO05D007081 1.9e-110 402.9 259 78.8
THA.LOC104825722 Tarenaya hassleriana HOM05D005673 ORTHO05D007081 1.5e-104 383.3 263 74.9
Manes.07G105200 Manihot esculenta HOM05D005673 ORTHO05D007081 3.5e-85 318.9 264 61.4
Thecc.10G064600 Theobroma cacao HOM05D005673 ORTHO05D007081 3.0e-84 315.8 258 62.0
Ciclev10032487m.g Citrus clementina HOM05D005673 ORTHO05D007081 2.8e-82 309.3 256 61.3
COL.COLO4_08204 Corchorus olitorius HOM05D005673 ORTHO05D007081 1.2e-80 303.9 258 59.7
Duzib114G0197 Durio zibethinus HOM05D005673 ORTHO05D007081 3.4e-80 302.4 258 59.7
Gorai.010G203600 Gossypium raimondii HOM05D005673 ORTHO05D007081 3.4e-80 302.4 260 58.8
Gohir.D06G174000 Gossypium hirsutum HOM05D005673 ORTHO05D007081 4.5e-80 302.0 260 58.8
Potri.008G046400 Populus trichocarpa HOM05D005673 ORTHO05D007081 4.5e-80 302.0 260 59.2
Sabra08G0032600 Salix brachista HOM05D005673 ORTHO05D007081 1.7e-79 300.1 260 59.2
TWI38G1168 Tripterygium wilfordii HOM05D005673 ORTHO05D007081 1.1e-78 297.4 255 59.2
Gohir.A06G179004 Gossypium hirsutum HOM05D005673 ORTHO05D007081 1.4e-78 297.0 263 57.4
QL08p057314 Quercus lobata HOM05D005673 ORTHO05D007081 1.9e-78 296.6 259 59.8
GSVIVG01032643001 Vitis vinifera HOM05D005673 ORTHO05D007081 5.4e-78 295.0 256 59.0
Haze_16957 Corylus avellana HOM05D005673 ORTHO05D007081 6.0e-77 291.6 256 59.4
Cfa001572 Carpinus fangiana HOM05D005673 ORTHO05D007081 7.9e-77 291.2 256 59.4
Actinidia38234 Actinidia chinensis HOM05D005673 ORTHO05D007081 6.7e-76 288.1 259 58.3
CiPaw.02G177700 Carya illinoinensis HOM05D005673 ORTHO05D007081 1.5e-75 287.0 256 59.0
Lj1A928T62 Lonicera japonica HOM05D005673 ORTHO05D007081 2.1e-74 283.1 259 56.0
Actinidia03012 Actinidia chinensis HOM05D005673 ORTHO05D007081 4.8e-74 282.0 259 57.9
PSO384G5123 Papaver somniferum HOM05D005673 ORTHO05D007081 4.8e-74 282.0 260 56.9
Lj1A926T37 Lonicera japonica HOM05D005673 ORTHO05D007081 6.2e-74 281.6 259 55.6
PSO339G1442 Papaver somniferum HOM05D005673 ORTHO05D007081 1.1e-73 280.8 260 56.9
CSS0045417 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 6.9e-73 278.1 259 57.5
MD01G1114500 Malus domestica HOM05D005673 ORTHO05D007081 2.0e-72 276.6 257 56.8
PGR142G2170 Punica granatum HOM05D005673 ORTHO05D007081 2.0e-72 276.6 266 57.1
CSS0019421 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 2.6e-72 276.2 259 57.1
Lalb_Chr19g0126251 Lupinus albus HOM05D005673 ORTHO05D007081 2.6e-72 276.2 258 54.3
Nitab4.5_0002078g0030 Nicotiana tabacum HOM05D005673 ORTHO05D007081 3.4e-72 275.8 263 54.8
CsaV3_5G006400 Cucumis sativus L. HOM05D005673 ORTHO05D007081 5.8e-72 275.0 259 54.4
FAN10G0505 Fragaria x ananassa HOM05D005673 ORTHO05D007081 9.9e-72 274.2 254 57.5
Nitab4.5_0000575g0020 Nicotiana tabacum HOM05D005673 ORTHO05D007081 1.3e-71 273.9 263 54.0
Aqoxy4G03141 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 1.7e-71 273.5 261 52.9
ECA233G0150 Erigeron canadensis HOM05D005673 ORTHO05D007081 1.7e-71 273.5 257 55.6
FAN03G2886 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.7e-71 273.5 254 57.1
FAN06G2416 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.7e-71 273.5 254 56.7
RcHm_v2.0_Chr1g0364441 Rosa chinensis HOM05D005673 ORTHO05D007081 1.7e-71 273.5 254 56.7
arahy.Tifrunner.gnm1.ann1.R12QR1 Arachis hypogaea HOM05D005673 ORTHO05D007081 2.2e-71 273.1 258 53.5
FvH4_7g20560 Fragaria vesca HOM05D005673 ORTHO05D007081 3.8e-71 272.3 254 56.7
FAN06G0951 Fragaria x ananassa HOM05D005673 ORTHO05D007081 3.8e-71 272.3 254 56.7
HanXRQChr08g0219361 Helianthus annuus HOM05D005673 ORTHO05D007081 3.8e-71 272.3 262 55.7
arahy.Tifrunner.gnm1.ann1.YNZN7C Arachis hypogaea HOM05D005673 ORTHO05D007081 1.1e-70 270.8 258 53.5
CAN.G551.89 Capsicum annuum HOM05D005673 ORTHO05D007081 1.9e-70 270.0 259 53.7
FAN01G1496 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.9e-70 270.0 254 56.7
FAN01G2008 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.9e-70 270.0 254 56.7
Lsat_1_v5_gn_8_21281 Lactuca sativa HOM05D005673 ORTHO05D007081 3.2e-70 269.2 267 53.2
Cfa005598 Carpinus fangiana HOM05D005673 ORTHO05D007081 5.5e-70 268.5 256 56.6
ClCG02G013770 Citrullus lanatus HOM05D005673 ORTHO05D007081 7.1e-70 268.1 264 55.3
MSTRG.9191 Avicennia marina HOM05D005673 ORTHO05D007081 1.6e-69 266.9 258 54.3
PGSC0003DMG400002916 Solanum tuberosum HOM05D005673 ORTHO05D007081 3.5e-69 265.8 259 53.3
Sopen12g004500 Solanum pennellii HOM05D005673 ORTHO05D007081 4.6e-69 265.4 259 52.9
MELO3C011718.2 Cucumis melo HOM05D005673 ORTHO05D007081 6.0e-69 265.0 262 54.6
Solyc12g009500.2 Solanum lycopersicum HOM05D005673 ORTHO05D007081 7.9e-69 264.6 259 52.9
Lj1g0007847 Lotus japonicus HOM05D005673 ORTHO05D007081 3.0e-68 262.7 254 53.9
MD07G1182600 Malus domestica HOM05D005673 ORTHO05D007081 5.1e-68 261.9 257 54.9
SalBow4G0159 Salvia bowleyana HOM05D005673 ORTHO05D007081 6.7e-68 261.5 253 54.2
Glyma.08G340700 Glycine max HOM05D005673 ORTHO05D007081 2.5e-67 259.6 256 53.5
MBI14_g17793_MAGBIO Magnolia biondii HOM05D005673 ORTHO05D007081 2.8e-66 256.1 254 56.7
Sed0006326 Sechium edule HOM05D005673 ORTHO05D007081 3.7e-66 255.8 263 52.9
TPR.G10191 Trifolium pratense HOM05D005673 ORTHO05D007081 1.1e-65 254.2 253 50.6
CANSAT11G2273 Cannabis sativa HOM05D005673 ORTHO05D007081 1.8e-65 253.4 251 52.2
Ca_07421_v3 Cicer arietinum L. HOM05D005673 ORTHO05D007081 2.4e-65 253.1 253 52.2
TAR623G0755 Trochodendron aralioides HOM05D005673 ORTHO05D007081 5.3e-65 251.9 222 59.9
Hund22450 Selenicereus undatus HOM05D005673 ORTHO05D007081 9.0e-65 251.1 266 52.6
Eucgr.G02786 Eucalyptus grandis HOM05D005673 ORTHO05D007081 1.5e-64 250.4 259 51.7
EL10Ac2g03532 Beta vulgaris HOM05D005673 ORTHO05D007081 3.4e-64 249.2 264 52.7
Ah.16g108000 Amaranthus hybridus HOM05D005673 ORTHO05D007081 1.3e-63 247.3 274 51.1
AUR62036006 Chenopodium quinoa HOM05D005673 ORTHO05D007081 1.3e-63 247.3 266 52.3
DCAR_015256 Daucus carota HOM05D005673 ORTHO05D007081 1.7e-63 246.9 317 46.7
Phvul.008G138600 Phaseolus vulgaris HOM05D005673 ORTHO05D007081 1.7e-63 246.9 258 51.9
SGA_v2.0_scaffold62G21443 Striga asiatica HOM05D005673 ORTHO05D007081 1.7e-63 246.9 253 52.6
Cc09_g02320 Coffea canephora HOM05D005673 ORTHO05D007081 8.4e-63 244.6 258 50.0
Rhsim03G0121300 Rhododendron simsii HOM05D005673 ORTHO05D007081 5.5e-62 241.9 226 58.0
HPP92_012063 Vanilla planifolia HOM05D005673 ORTHO05D007081 2.3e-60 236.5 267 49.8
Prupe.2G221200 Prunus persica HOM05D005673 ORTHO05D007081 3.1e-57 226.1 212 57.5
Atru.BG.271.p Acer truncatum HOM05D005673 ORTHO05D007081 4.1e-57 225.7 232 53.0
Oeu008278.1 Olea europaea HOM05D005673 ORTHO05D007081 4.1e-57 225.7 217 54.4
vmacro07099 Vaccinium macrocarpon HOM05D005673 ORTHO05D007081 2.0e-56 223.4 228 56.1
Sc20g0002250 Simmondsia chinensis HOM05D005673 ORTHO05D007081 1.7e-55 220.3 226 52.2
Migut.F02013 Erythranthe guttata HOM05D005673 ORTHO05D007081 3.8e-55 219.2 238 48.7
Zm00001eb378810 Zea mays HOM05D005673 ORTHO05D007081 5.5e-54 215.3 234 51.3
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 7.2e-54 214.9 258 46.1
Os03g0284000 Oryza sativa ssp. japonica HOM05D005673 ORTHO05D007081 4.8e-50 202.2 235 50.2
Nn2g10602 Nelumbo nucifera HOM05D005673 ORTHO05D007081 3.1e-49 199.5 185 56.8
AUR62041616 Chenopodium quinoa HOM05D005673 ORTHO05D007081 7.7e-48 194.9 266 44.0
Peaxi162Scf00170g00413 Petunia axillaris HOM05D005673 ORTHO05D007081 2.2e-47 193.4 234 46.6
Atru.chr12.608 Acer truncatum HOM05D005673 ORTHO05D007081 1.6e-45 187.2 165 58.2
Dinv25934 Davidia involucrata HOM05D005673 ORTHO05D007081 2.6e-43 179.9 168 57.1
Hma1.2p1_0348F.1_g131860 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 1.3e-39 167.5 152 57.2
MD00G1166800 Malus domestica HOM05D005673 ORTHO05D007081 1.2e-37 161.0 183 48.6
Mapoly0003s0199 Marchantia polymorpha HOM05D005673 ORTHO05D007081 9.7e-35 151.4 253 37.5
Medtr7g047440 Medicago truncatula HOM05D005673 ORTHO05D007081 2.8e-34 149.8 157 47.8
Medtr7g451610 Medicago truncatula HOM05D005673 ORTHO05D007081 2.8e-34 149.8 157 47.8
Medtr7g451710 Medicago truncatula HOM05D005673 ORTHO05D007081 2.8e-34 149.8 157 47.8
SGA_v2.0_scaffold17G08196 Striga asiatica HOM05D005673 ORTHO05D007081 3.7e-34 149.4 146 54.1
VMungo1383G1385 Vigna mungo HOM05D005673 ORTHO05D007081 1.4e-33 147.5 156 49.4
Pp3c2_31740 Physcomitrium patens HOM05D005673 ORTHO05D007081 9.1e-33 144.8 282 34.4
HPP92_012075 Vanilla planifolia HOM05D005673 ORTHO05D007081 4.2e-30 136.0 151 49.0
AagrBONN_evm.TU.Sc2ySwM_362.1467 Anthoceros agrestis HOM05D005673 ORTHO05D007081 2.1e-29 133.7 253 31.2
SMO347G0616 Selaginella moellendorffii HOM05D005673 ORTHO05D007081 8.0e-29 131.7 202 36.6
unitig_37.g12298 Utricularia gibba HOM05D005673 ORTHO05D007081 2.6e-27 126.7 124 52.4
PSO713G0026 Papaver somniferum HOM05D005673 ORTHO05D007081 7.5e-27 125.2 165 45.5
Psat3g152960 Pisum sativum HOM05D005673 ORTHO05D007081 1.7e-26 124.0 121 50.4
Psat0s9937g0040 Pisum sativum HOM05D005673 ORTHO05D007081 7.0e-25 118.6 114 54.4
Psat3g152920 Pisum sativum HOM05D005673 ORTHO05D007081 2.2e-23 113.6 94 53.2
BcaB04g18418 Brassica carinata HOM05D005673 ORTHO05D007081 7.2e-22 108.6 95 63.2
Aqoxy4G03136 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 9.4e-22 108.2 169 42.0
Psat3g153040 Pisum sativum HOM05D005673 ORTHO05D007081 9.4e-22 108.2 94 52.1
Cpa.g.c44350 Carica papaya HOM05D005673 ORTHO05D007081 1.6e-21 107.5 77 70.1
unitig_37.g12299 Utricularia gibba HOM05D005673 ORTHO05D007081 1.6e-21 107.5 79 58.2
Hma1.2p1_0348F.1_g131840 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 3.4e-19 99.8 81 64.2
VMungo1383G3547 Vigna mungo HOM05D005673 ORTHO05D007081 4.5e-16 89.4 74 59.5
Medtr7g050450 Medicago truncatula HOM05D005673 ORTHO05D007081 7.2e-14 82.0 78 52.6
HanXRQChr02g0043631 Helianthus annuus HOM05D005673 ORTHO05D007081 6.1e-13 79.0 99 45.5
CBR_g23354 Chara braunii HOM05D005673 ORTHO05D007081 2.3e-12 77.0 157 35.0
Cpa.g.sc5360.1 Carica papaya HOM05D005673 ORTHO05D007081 6.8e-12 75.5 49 73.5
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 1.6e-08 64.3 71 49.3


User provided reference genes

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