Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p34750 Brassica napus HOM05D007750 ORTHO05D009803 8.3e-111 405.2 206 100.0
BolC9t56321H Brassica oleracea HOM05D007750 ORTHO05D009803 8.3e-111 405.2 206 100.0
BraA09t38312Z Brassica rapa HOM05D007750 ORTHO05D009803 1.1e-102 378.3 206 94.7
A09p27430 Brassica napus HOM05D007750 ORTHO05D009803 1.9e-102 377.5 206 94.2
Thhalv10028537m.g Eutrema salsugineum HOM05D007750 ORTHO05D009803 1.5e-83 314.7 204 77.5
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 2.4e-81 307.4 201 77.1
Carub.0006s3078 Capsella rubella HOM05D007750 ORTHO05D009803 1.1e-78 298.5 204 74.0
CARHR254670 Cardamine hirsuta HOM05D007750 ORTHO05D009803 3.2e-78 297.0 205 75.1
Aa31LG9G10670 Aethionema arabicum HOM05D007750 ORTHO05D009803 1.9e-75 287.7 203 72.4
BcaB01g01674 Brassica carinata HOM05D007750 ORTHO05D009803 1.0e-68 265.4 190 74.7
AT4G11690 Arabidopsis thaliana HOM05D007750 ORTHO05D009803 1.1e-65 255.4 205 65.4
THA.LOC104801704 Tarenaya hassleriana HOM05D007750 ORTHO05D009803 1.3e-63 248.4 204 64.7
QL01p031803 Quercus lobata HOM05D007750 ORTHO05D009803 4.3e-51 206.8 198 53.0
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 4.8e-50 203.4 205 53.2
CiPaw.13G094000 Carya illinoinensis HOM05D007750 ORTHO05D009803 1.8e-49 201.4 203 51.7
Haze_24099 Corylus avellana HOM05D007750 ORTHO05D009803 1.8e-49 201.4 200 52.5
GSVIVG01024955001 Vitis vinifera HOM05D007750 ORTHO05D009803 3.1e-49 200.7 202 52.0
CSS0037746 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 5.3e-49 199.9 196 52.6
Gorai.003G131800 Gossypium raimondii HOM05D007750 ORTHO05D009803 1.5e-48 198.4 200 54.5
Prupe.6G076800 Prunus persica HOM05D007750 ORTHO05D009803 3.4e-48 197.2 199 52.8
Gohir.A03G042099 Gossypium hirsutum HOM05D007750 ORTHO05D009803 5.9e-48 196.4 200 53.5
Gohir.D03G125600 Gossypium hirsutum HOM05D007750 ORTHO05D009803 7.7e-48 196.1 200 54.0
RcHm_v2.0_Chr5g0064911 Rosa chinensis HOM05D007750 ORTHO05D009803 1.7e-47 194.9 202 50.0
Cpa.g.sc81.142 Carica papaya HOM05D007750 ORTHO05D009803 6.5e-47 193.0 193 51.3
FvH4_3g36170 Fragaria vesca HOM05D007750 ORTHO05D009803 6.5e-47 193.0 208 49.0
Atru.chr3.3911 Acer truncatum HOM05D007750 ORTHO05D009803 1.4e-46 191.8 203 49.3
Manes.02G132900 Manihot esculenta HOM05D007750 ORTHO05D009803 5.5e-46 189.9 198 51.5
Duzib150G0757 Durio zibethinus HOM05D007750 ORTHO05D009803 9.4e-46 189.1 202 50.5
FAN16G0393 Fragaria x ananassa HOM05D007750 ORTHO05D009803 2.7e-45 187.6 194 50.5
Thecc.09G321000 Theobroma cacao HOM05D007750 ORTHO05D009803 2.7e-45 187.6 193 51.8
Cfa011507 Carpinus fangiana HOM05D007750 ORTHO05D009803 3.6e-45 187.2 200 49.0
FAN21G3841 Fragaria x ananassa HOM05D007750 ORTHO05D009803 3.6e-45 187.2 194 50.5
FAN25G2068 Fragaria x ananassa HOM05D007750 ORTHO05D009803 6.1e-45 186.4 194 50.0
FAN11G0214 Fragaria x ananassa HOM05D007750 ORTHO05D009803 7.9e-45 186.0 194 51.0
Nn1g04208 Nelumbo nucifera HOM05D007750 ORTHO05D009803 1.0e-44 185.7 198 51.5
RcHm_v2.0_Chr5g0064671 Rosa chinensis HOM05D007750 ORTHO05D009803 6.7e-44 183.0 194 50.0
TPR.G7494 Trifolium pratense HOM05D007750 ORTHO05D009803 6.7e-44 183.0 202 47.5
Phvul.003G092000 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 1.1e-43 182.2 201 49.3
MD03G1092900 Malus domestica HOM05D007750 ORTHO05D009803 3.3e-43 180.6 199 47.2
Phvul.003G091900 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 4.3e-43 180.3 206 47.6
PGSC0003DMG400022754 Solanum tuberosum HOM05D007750 ORTHO05D009803 4.3e-43 180.3 204 46.1
Migut.N02392 Erythranthe guttata HOM05D007750 ORTHO05D009803 7.4e-43 179.5 205 45.4
Aqoxy496s001 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 1.7e-42 178.3 197 48.7
Aqoxy4G02931 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 1.7e-42 178.3 197 48.7
CSS0028051 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 6.3e-42 176.4 181 50.8
Ca_04398_v3 Cicer arietinum L. HOM05D007750 ORTHO05D009803 1.1e-41 175.6 200 48.0
Medtr6g022260 Medicago truncatula HOM05D007750 ORTHO05D009803 1.1e-41 175.6 201 48.3
Aqoxy7G03815 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 3.1e-41 174.1 197 47.7
Cc01_g12900 Coffea canephora HOM05D007750 ORTHO05D009803 3.1e-41 174.1 197 46.2
Sopen08g028580 Solanum pennellii HOM05D007750 ORTHO05D009803 6.9e-41 172.9 204 45.6
CANSAT54G1947 Cannabis sativa HOM05D007750 ORTHO05D009803 9.1e-41 172.6 200 46.0
Lj2g0016115 Lotus japonicus HOM05D007750 ORTHO05D009803 9.1e-41 172.6 202 45.0
Psat1g083360 Pisum sativum HOM05D007750 ORTHO05D009803 1.5e-40 171.8 200 48.5
MBI14_g36920_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 3.4e-40 170.6 199 44.2
Potri.017G131600 Populus trichocarpa HOM05D007750 ORTHO05D009803 4.5e-40 170.2 200 49.5
CAN.G981.43 Capsicum annuum HOM05D007750 ORTHO05D009803 1.3e-39 168.7 203 44.3
Glyma.07G217200 Glycine max HOM05D007750 ORTHO05D009803 1.7e-39 168.3 203 46.8
Glyma.06G033500 Glycine max HOM05D007750 ORTHO05D009803 2.9e-39 167.5 203 46.8
VMungo1215G1573 Vigna mungo HOM05D007750 ORTHO05D009803 9.4e-38 162.5 191 46.6
Lalb_Chr12g0196171 Lupinus albus HOM05D007750 ORTHO05D009803 1.6e-37 161.8 208 45.7
arahy.Tifrunner.gnm1.ann1.7C1NTJ Arachis hypogaea HOM05D007750 ORTHO05D009803 2.7e-37 161.0 191 48.2
arahy.Tifrunner.gnm1.ann1.T5BWJF Arachis hypogaea HOM05D007750 ORTHO05D009803 6.1e-37 159.8 196 46.4
Glyma.17G016400 Glycine max HOM05D007750 ORTHO05D009803 1.8e-36 158.3 203 44.3
SalBow3G4043 Salvia bowleyana HOM05D007750 ORTHO05D009803 6.7e-36 156.4 204 42.6
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 6.7e-36 156.4 201 42.8
AL6G46300 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 7.7e-32 142.9 85 77.6
AL6G46430 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 7.7e-32 142.9 85 77.6
Rhsim13G0082600 Rhododendron simsii HOM05D007750 ORTHO05D009803 4.2e-30 137.1 153 43.8
Sc21g0005800 Simmondsia chinensis HOM05D007750 ORTHO05D009803 9.4e-30 136.0 198 40.4
PGR083G0657 Punica granatum HOM05D007750 ORTHO05D009803 8.0e-29 132.9 203 40.9
COL.COLO4_18513 Corchorus olitorius HOM05D007750 ORTHO05D009803 2.8e-26 124.4 197 38.1
Actinidia07034 Actinidia chinensis HOM05D007750 ORTHO05D009803 4.8e-26 123.6 208 38.9
Sabra17G0109600 Salix brachista HOM05D007750 ORTHO05D009803 1.4e-25 122.1 109 56.9
AUR62018631 Chenopodium quinoa HOM05D007750 ORTHO05D009803 5.3e-25 120.2 173 39.9
Ciclev10030066m.g Citrus clementina HOM05D007750 ORTHO05D009803 5.9e-24 116.7 207 39.1
Lj1P153T20 Lonicera japonica HOM05D007750 ORTHO05D009803 5.9e-24 116.7 110 48.2
ClCG09G016230 Citrullus lanatus HOM05D007750 ORTHO05D009803 3.8e-23 114.0 153 42.5
Glyma.07G257600 Glycine max HOM05D007750 ORTHO05D009803 6.5e-23 113.2 202 38.1
ATR0559G149 Amborella trichopoda HOM05D007750 ORTHO05D009803 1.2e-21 109.0 199 32.2
CsaV3_7G007090 Cucumis sativus L. HOM05D007750 ORTHO05D009803 5.7e-19 100.1 148 39.9
Nitab4.5_0007891g0010 Nicotiana tabacum HOM05D007750 ORTHO05D009803 2.4e-17 94.7 86 50.0
Nitab4.5_0001714g0210 Nicotiana tabacum HOM05D007750 ORTHO05D009803 7.0e-17 93.2 85 49.4
EL10Ac5g12003 Beta vulgaris HOM05D007750 ORTHO05D009803 2.2e-15 88.2 85 48.2
Oeu012315.1 Olea europaea HOM05D007750 ORTHO05D009803 8.5e-15 86.3 86 41.9
Hma1.2p1_0418F.1_g149220 Hydrangea macrophylla HOM05D007750 ORTHO05D009803 3.6e-13 80.9 56 64.3
Eucgr.H02967 Eucalyptus grandis HOM05D007750 ORTHO05D009803 2.3e-12 78.2 86 41.9
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 7.5e-11 73.2 177 29.4
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 2.2e-10 71.6 177 28.8
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 1.4e-09 68.9 194 26.3
SEGI_26661 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 2.4e-09 68.2 159 29.6
arahy.Tifrunner.gnm1.ann1.3K1SXW Arachis hypogaea HOM05D000162 ORTHO05D000090 5.4e-09 67.0 138 32.6
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 7.0e-09 66.6 182 25.3
MBI01_g37800_MAGBIO Magnolia biondii HOM05D000891 ORTHO05D000761 1.6e-08 65.5 97 35.1
Cfa002578 Carpinus fangiana HOM05D001779 ORTHO05D001753 4.5e-08 63.9 159 30.8
Cc01_g16930 Coffea canephora HOM05D001779 ORTHO05D001753 4.5e-08 63.9 118 31.4
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.9e-08 63.5 176 26.1
SEGI_32122 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 5.9e-08 63.5 172 23.8
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 1.0e-07 62.8 167 26.3
THA.LOC104810542 Tarenaya hassleriana HOM05D007352 ORTHO05D009389 1.3e-07 62.4 122 29.5
MBI07_g05481_MAGBIO Magnolia biondii HOM05D001779 ORTHO05D001753 1.7e-07 62.0 159 27.0
Rhsim13G0046000 Rhododendron simsii HOM05D001779 ORTHO05D001753 1.7e-07 62.0 159 28.3
AUR62008921 Chenopodium quinoa HOM05D001779 ORTHO05D001753 2.3e-07 61.6 159 27.7
Dinv02560 Davidia involucrata HOM05D008657 ORTHO05D010869 2.3e-07 61.6 182 24.2
ATR0618G378 Amborella trichopoda HOM05D000891 ORTHO05D000761 2.9e-07 61.2 146 30.1
AUR62001095 Chenopodium quinoa HOM05D001779 ORTHO05D001753 2.9e-07 61.2 118 30.5
SGA_v2.0_scaffold171G38942 Striga asiatica HOM05D001779 ORTHO05D001753 2.9e-07 61.2 158 27.8
Eucgr.K02161 Eucalyptus grandis HOM05D001779 ORTHO05D001753 3.8e-07 60.8 159 28.3
Dinv12682 Davidia involucrata HOM05D001779 ORTHO05D001753 5.0e-07 60.5 159 27.7
HanXRQChr03g0091321 Helianthus annuus HOM05D000162 ORTHO05D000090 5.0e-07 60.5 125 34.4
Peaxi162Scf00403g00211 Petunia axillaris HOM05D001779 ORTHO05D001753 5.0e-07 60.5 159 28.9
DCAR_004720 Daucus carota HOM05D001779 ORTHO05D001753 6.6e-07 60.1 159 28.3
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 6.6e-07 60.1 167 26.9
Sopen01g002480 Solanum pennellii HOM05D001779 ORTHO05D001753 6.6e-07 60.1 159 28.3
PGSC0003DMG400032206 Solanum tuberosum HOM05D001779 ORTHO05D001753 6.6e-07 60.1 159 28.3
EL10Ac7g17850 Beta vulgaris HOM05D001779 ORTHO05D001753 8.6e-07 59.7 118 30.5
PGR119G1317 Punica granatum HOM05D000891 ORTHO05D000761 8.6e-07 59.7 148 33.1
Sc17g0002310 Simmondsia chinensis HOM05D001779 ORTHO05D001753 8.6e-07 59.7 159 28.3
Solyc01g006500.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 8.6e-07 59.7 159 28.3
CAN.G649.15 Capsicum annuum HOM05D001779 ORTHO05D001753 1.1e-06 59.3 159 28.3
MD07G1079700 Malus domestica HOM05D007455 ORTHO05D009431 1.1e-06 59.3 160 25.0
Potri.001G171300 Populus trichocarpa HOM05D000891 ORTHO05D000761 1.1e-06 59.3 129 30.2
Sc17g0002360 Simmondsia chinensis HOM05D001779 ORTHO05D001753 1.1e-06 59.3 159 28.3
Lj1g0021736 Lotus japonicus HOM05D001779 ORTHO05D001753 1.5e-06 58.9 159 27.7
SalBow2G1681 Salvia bowleyana HOM05D000891 ORTHO05D000761 1.5e-06 58.9 96 37.5
SalBow2G3131 Salvia bowleyana HOM05D000891 ORTHO05D000761 1.5e-06 58.9 96 37.5
Nn7g36379 Nelumbo nucifera HOM05D000891 ORTHO05D000761 1.9e-06 58.5 109 30.3
Potri.003G062700 Populus trichocarpa HOM05D000891 ORTHO05D000761 1.9e-06 58.5 75 37.3
AUR62012561 Chenopodium quinoa HOM05D000891 ORTHO05D000761 2.5e-06 58.2 89 34.8
Medtr2g103550 Medicago truncatula HOM05D000891 ORTHO05D000761 2.5e-06 58.2 131 33.6
PSO675G0716 Papaver somniferum HOM05D000162 ORTHO05D000090 2.5e-06 58.2 110 26.4
TAR633G2615 Trochodendron aralioides HOM05D001779 ORTHO05D001753 2.5e-06 58.2 157 24.2
MSTRG.20959 Avicennia marina HOM05D001779 ORTHO05D001753 3.3e-06 57.8 159 26.4
Nitab4.5_0001568g0160 Nicotiana tabacum HOM05D001779 ORTHO05D001753 3.3e-06 57.8 159 28.3
vmacro13802 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 3.3e-06 57.8 100 32.0
Atru.chr3.547 Acer truncatum HOM05D000891 ORTHO05D000761 4.3e-06 57.4 129 32.6
arahy.Tifrunner.gnm1.ann1.B0BY4Q Arachis hypogaea HOM05D000891 ORTHO05D000761 4.3e-06 57.4 95 33.7
arahy.Tifrunner.gnm1.ann1.LDS0KH Arachis hypogaea HOM05D000891 ORTHO05D000761 4.3e-06 57.4 95 33.7
HanXRQChr13g0420861 Helianthus annuus HOM05D000162 ORTHO05D000090 4.3e-06 57.4 150 30.7
Nitab4.5_0001146g0150 Nicotiana tabacum HOM05D001779 ORTHO05D001753 4.3e-06 57.4 159 27.7
Oeu014918.1 Olea europaea HOM05D000891 ORTHO05D000761 4.3e-06 57.4 97 35.1
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 4.3e-06 57.4 167 28.1
arahy.Tifrunner.gnm1.ann1.P8X82K Arachis hypogaea HOM05D001779 ORTHO05D001753 5.6e-06 57.0 156 27.6
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 5.6e-06 57.0 114 31.6
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 5.6e-06 57.0 148 27.7
CANSAT01G1424 Cannabis sativa HOM05D000891 ORTHO05D000761 7.3e-06 56.6 156 28.2
Cc01_g16940 Coffea canephora HOM05D001779 ORTHO05D001753 7.3e-06 56.6 98 31.6
Cc04_g04200 Coffea canephora HOM05D000891 ORTHO05D000761 7.3e-06 56.6 95 37.9
MELO3C007346.2 Cucumis melo HOM05D000891 ORTHO05D000761 7.3e-06 56.6 88 35.2
Migut.H00180 Erythranthe guttata HOM05D000891 ORTHO05D000761 7.3e-06 56.6 97 32.0
arahy.Tifrunner.gnm1.ann1.X6Z628 Arachis hypogaea HOM05D001779 ORTHO05D001753 9.5e-06 56.2 156 27.6
ECA238G3715 Erigeron canadensis HOM05D000162 ORTHO05D000090 9.5e-06 56.2 154 26.6


User provided reference genes

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