Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 2.4e-131 472.2 248 100.0
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 2.4e-131 472.2 248 100.0
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 5.5e-128 461.1 254 96.5
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 6.7e-126 454.1 254 95.3
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 5.3e-115 417.9 255 87.5
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 7.2e-112 407.5 255 87.1
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 2.7e-111 405.6 255 83.5
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 8.0e-111 404.1 252 84.9
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.0e-110 403.7 254 85.0
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 1.4e-110 403.3 252 85.7
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 2.3e-110 402.5 255 84.7
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 2.5e-104 382.5 245 81.6
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 1.1e-96 357.1 248 76.6
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 6.1e-95 351.3 253 74.7
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 9.2e-91 337.4 250 72.4
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 7.0e-83 311.2 252 67.5
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 6.0e-82 308.1 248 65.7
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 6.6e-81 304.7 249 66.3
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.5e-80 303.5 249 65.9
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 7.3e-80 301.2 248 65.3
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 7.3e-80 301.2 249 65.1
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 9.5e-80 300.8 249 64.3
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 6.2e-79 298.1 250 64.0
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 6.2e-79 298.1 249 65.1
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 2.6e-77 292.7 249 65.1
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 3.4e-77 292.4 248 63.7
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 1.7e-76 290.0 248 62.1
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 1.2e-74 283.9 248 61.7
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 2.7e-74 282.7 250 65.2
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 4.6e-74 282.0 248 60.9
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 1.0e-73 280.8 250 64.8
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 1.0e-73 280.8 250 64.8
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 8.6e-73 277.7 251 64.1
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 8.6e-73 277.7 253 64.8
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 3.3e-72 275.8 252 61.1
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.6e-71 273.5 248 62.1
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 1.1e-70 270.8 248 59.3
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 7.5e-69 264.6 252 59.9
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 1.2e-66 257.3 252 57.9
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 1.6e-66 256.9 252 56.3
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 1.0e-65 254.2 253 56.9
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 1.7e-65 253.4 246 57.7
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 3.0e-65 252.7 247 56.3
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 6.6e-65 251.5 238 57.6
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 8.6e-65 251.1 250 56.4
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 1.1e-64 250.8 250 56.4
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 2.5e-64 249.6 251 55.8
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 3.3e-64 249.2 248 56.0
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 1.2e-63 247.3 251 55.8
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 1.2e-63 247.3 248 54.0
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 1.6e-63 246.9 252 56.0
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 1.6e-63 246.9 248 55.6
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 2.1e-63 246.5 249 54.6
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 2.8e-63 246.1 249 55.8
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 3.6e-63 245.7 243 56.0
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 4.7e-63 245.4 255 54.1
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 6.2e-63 245.0 246 56.1
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 8.1e-63 244.6 251 56.2
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 1.1e-62 244.2 249 55.0
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 1.4e-62 243.8 251 55.4
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 2.4e-62 243.0 254 52.4
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 2.4e-62 243.0 247 53.8
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 3.1e-62 242.7 250 54.8
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 6.8e-62 241.5 255 55.7
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 1.5e-61 240.4 254 53.5
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 2.0e-61 240.0 233 57.1
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 3.4e-61 239.2 249 56.2
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 4.4e-61 238.8 249 53.4
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 5.8e-61 238.4 246 54.1
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 5.8e-61 238.4 248 54.8
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 5.8e-61 238.4 248 54.8
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 7.6e-61 238.0 246 54.1
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 7.6e-61 238.0 252 52.8
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 7.6e-61 238.0 238 57.1
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.7e-60 236.9 179 70.4
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 2.2e-60 236.5 252 52.0
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 2.2e-60 236.5 253 53.8
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 4.9e-60 235.3 240 56.2
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 4.9e-60 235.3 253 52.2
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 6.4e-60 235.0 252 51.6
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 6.4e-60 235.0 237 56.1
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 6.4e-60 235.0 238 56.3
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 8.4e-60 234.6 246 55.3
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 8.4e-60 234.6 240 54.6
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 8.4e-60 234.6 233 54.9
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 1.4e-59 233.8 248 53.2
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 2.4e-59 233.0 254 52.8
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 3.2e-59 232.6 254 52.4
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 1.6e-58 230.3 248 54.4
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 1.6e-58 230.3 246 56.1
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 3.5e-58 229.2 241 53.5
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 3.5e-58 229.2 246 55.7
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 3.5e-58 229.2 241 54.8
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 1.0e-57 227.6 251 53.4
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 1.0e-57 227.6 241 54.4
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 2.3e-57 226.5 251 53.0
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 8.7e-57 224.6 242 55.4
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 1.9e-56 223.4 226 56.6
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 1.4e-54 217.2 257 51.4
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 9.0e-54 214.5 248 49.6
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 2.6e-53 213.0 236 51.7
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 5.8e-53 211.8 237 53.2
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 7.6e-53 211.5 258 50.0
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 2.9e-52 209.5 253 50.2
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 8.4e-52 208.0 241 51.5
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 8.4e-52 208.0 248 50.0
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 1.1e-51 207.6 236 50.8
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 1.9e-51 206.8 248 48.0
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 1.7e-49 200.3 248 47.6
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 1.1e-46 191.0 227 48.9
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.3e-44 184.1 126 77.0
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 2.5e-40 169.9 184 52.7
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 2.6e-37 159.8 188 49.5
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 3.2e-35 152.9 132 63.6
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 2.5e-32 143.3 186 44.6
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 6.3e-23 112.1 228 36.0
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 1.1e-22 111.3 121 54.5
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.8e-22 110.5 232 37.5
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 1.0e-20 104.8 174 40.8
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 5.5e-19 99.0 140 44.3
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 1.6e-18 97.4 75 68.0
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 7.9e-18 95.1 131 43.5
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 1.5e-16 90.9 79 68.4
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 7.4e-16 88.6 149 38.3
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 1.7e-15 87.4 102 50.0
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 2.2e-12 77.0 85 49.4
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 1.1e-08 64.7 118 38.1
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 4.8e-07 59.3 74 39.2
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 5.3e-06 55.8 65 49.2


User provided reference genes

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