Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p28840 Brassica napus HOM05D003027 ORTHO05D003455 1.1e-81 306.6 151 100.0
BraA09t37858Z Brassica rapa HOM05D003027 ORTHO05D003455 1.7e-47 193.0 107 89.7
BolC9t55746H Brassica oleracea HOM05D003027 ORTHO05D003455 2.2e-47 192.6 96 96.9
C04p02350 Brassica napus HOM05D003027 ORTHO05D003455 8.2e-42 174.1 96 88.5
BolC4t21881H Brassica oleracea HOM05D003027 ORTHO05D003455 8.2e-42 174.1 96 88.5
BcaC02g12742 Brassica carinata HOM05D003027 ORTHO05D003455 1.1e-41 173.7 96 88.5
Thhalv10016317m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 3.1e-41 172.2 96 88.5
Sp4g23270 Schrenkiella parvula HOM05D003027 ORTHO05D003455 5.3e-41 171.4 96 86.5
AL4G38920 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 9.0e-41 170.6 95 88.4
CARHR136060 Cardamine hirsuta HOM05D003027 ORTHO05D003455 9.0e-41 170.6 95 88.4
AT2G40950 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 2.6e-40 169.1 95 87.4
BcaC02g12863 Brassica carinata HOM05D003027 ORTHO05D003455 3.4e-40 168.7 96 86.5
Carub.0004s2327 Capsella rubella HOM05D003027 ORTHO05D003455 4.5e-40 168.3 96 86.5
C04p68700 Brassica napus HOM05D003027 ORTHO05D003455 2.5e-38 162.5 96 84.4
BolC4t28375H Brassica oleracea HOM05D003027 ORTHO05D003455 2.5e-38 162.5 96 84.4
BraA04t18587Z Brassica rapa HOM05D003027 ORTHO05D003455 4.1e-33 145.2 96 79.2
A04p31300 Brassica napus HOM05D003027 ORTHO05D003455 5.3e-33 144.8 95 80.0
Aa31LG3G1070 Aethionema arabicum HOM05D003027 ORTHO05D003455 4.5e-32 141.7 102 74.5
BcaC04g21686 Brassica carinata HOM05D003027 ORTHO05D003455 2.5e-30 136.0 71 94.4
QL07p012681 Quercus lobata HOM05D003027 ORTHO05D003455 1.3e-26 123.6 132 54.5
Haze_20266 Corylus avellana HOM05D003027 ORTHO05D003455 2.2e-26 122.9 97 64.9
QL07p012799 Quercus lobata HOM05D003027 ORTHO05D003455 2.2e-26 122.9 98 65.3
Cfa019972 Carpinus fangiana HOM05D003027 ORTHO05D003455 3.7e-26 122.1 98 64.3
Dinv36122 Davidia involucrata HOM05D003027 ORTHO05D003455 5.3e-25 118.2 99 64.6
THA.LOC104824380 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 5.3e-25 118.2 107 62.6
MD07G1018800 Malus domestica HOM05D003027 ORTHO05D003455 9.1e-25 117.5 99 64.6
CARHR166770 Cardamine hirsuta HOM05D003027 ORTHO05D003455 1.2e-24 117.1 104 66.3
Potri.016G032400 Populus trichocarpa HOM05D003027 ORTHO05D003455 1.2e-24 117.1 98 66.3
Migut.K00152 Erythranthe guttata HOM05D003027 ORTHO05D003455 3.4e-24 115.5 100 61.0
Carub.0005s2341 Capsella rubella HOM05D003027 ORTHO05D003455 4.5e-24 115.2 101 60.4
CSS0006760 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 1.7e-23 113.2 99 60.6
CSS0013065 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 1.7e-23 113.2 99 60.6
Sabra16G0035700 Salix brachista HOM05D003027 ORTHO05D003455 1.7e-23 113.2 102 62.7
CANSAT64G1028 Cannabis sativa HOM05D003027 ORTHO05D003455 2.2e-23 112.8 103 60.2
Potri.006G034500 Populus trichocarpa HOM05D003027 ORTHO05D003455 2.2e-23 112.8 98 64.3
MELO3C009730.2 Cucumis melo HOM05D003027 ORTHO05D003455 2.9e-23 112.5 100 61.0
BcaC02g11096 Brassica carinata HOM05D003027 ORTHO05D003455 3.8e-23 112.1 78 74.4
Cc06_g20180 Coffea canephora HOM05D003027 ORTHO05D003455 5.0e-23 111.7 101 57.4
Atru.chr1.1410 Acer truncatum HOM05D003027 ORTHO05D003455 8.5e-23 110.9 99 63.6
AL5G38030 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 8.5e-23 110.9 101 60.4
CsaV3_3G039880 Cucumis sativus L. HOM05D003027 ORTHO05D003455 8.5e-23 110.9 100 60.0
Prupe.2G020400 Prunus persica HOM05D003027 ORTHO05D003455 1.1e-22 110.5 100 62.0
COL.COLO4_19389 Corchorus olitorius HOM05D003027 ORTHO05D003455 1.4e-22 110.2 99 62.6
Lj1A1084T71 Lonicera japonica HOM05D003027 ORTHO05D003455 1.4e-22 110.2 101 60.4
Gohir.A13G001500 Gossypium hirsutum HOM05D003027 ORTHO05D003455 1.9e-22 109.8 99 60.6
Gohir.D13G000900 Gossypium hirsutum HOM05D003027 ORTHO05D003455 1.9e-22 109.8 99 60.6
Gorai.013G000800 Gossypium raimondii HOM05D003027 ORTHO05D003455 1.9e-22 109.8 99 60.6
THA.LOC104803232 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 2.5e-22 109.4 110 60.9
AT3G56660 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 3.2e-22 109.0 102 59.8
COL.COLO4_26642 Corchorus olitorius HOM05D003027 ORTHO05D003455 3.2e-22 109.0 101 61.4
Oeu044242.3 Olea europaea HOM05D003027 ORTHO05D003455 3.2e-22 109.0 100 59.0
Sabra06G0023000 Salix brachista HOM05D003027 ORTHO05D003455 3.2e-22 109.0 98 64.3
Thecc.05G123000 Theobroma cacao HOM05D003027 ORTHO05D003455 3.2e-22 109.0 99 60.6
GSVIVG01025788001 Vitis vinifera HOM05D003027 ORTHO05D003455 3.2e-22 109.0 100 60.0
Duzib128G0339 Durio zibethinus HOM05D003027 ORTHO05D003455 4.2e-22 108.6 100 59.0
SalBow1G6916 Salvia bowleyana HOM05D003027 ORTHO05D003455 7.2e-22 107.8 98 57.1
CiPaw.10G042900 Carya illinoinensis HOM05D003027 ORTHO05D003455 1.2e-21 107.1 117 52.1
Ca_08358_v3 Cicer arietinum L. HOM05D003027 ORTHO05D003455 1.2e-21 107.1 96 60.4
Eucgr.A02199 Eucalyptus grandis HOM05D003027 ORTHO05D003455 1.6e-21 106.7 112 54.5
ClCG10G016460 Citrullus lanatus HOM05D003027 ORTHO05D003455 2.1e-21 106.3 99 58.6
Dinv20756 Davidia involucrata HOM05D003027 ORTHO05D003455 2.1e-21 106.3 135 49.6
Dinv20764 Davidia involucrata HOM05D003027 ORTHO05D003455 2.1e-21 106.3 135 49.6
Medtr7g088890 Medicago truncatula HOM05D003027 ORTHO05D003455 2.1e-21 106.3 96 60.4
VMungo1383G0888 Vigna mungo HOM05D003027 ORTHO05D003455 2.1e-21 106.3 96 60.4
CiPaw.09G050600 Carya illinoinensis HOM05D003027 ORTHO05D003455 3.6e-21 105.5 134 51.5
Duzib106G1517 Durio zibethinus HOM05D003027 ORTHO05D003455 3.6e-21 105.5 112 53.6
DCAR_020597 Daucus carota HOM05D003027 ORTHO05D003455 4.7e-21 105.1 99 56.6
Dinv20757 Davidia involucrata HOM05D003027 ORTHO05D003455 6.1e-21 104.8 101 60.4
Lalb_Chr24g0400521 Lupinus albus HOM05D003027 ORTHO05D003455 6.1e-21 104.8 96 58.3
Sp5g05900 Schrenkiella parvula HOM05D003027 ORTHO05D003455 1.4e-20 103.6 103 61.2
Sed0011831 Sechium edule HOM05D003027 ORTHO05D003455 1.8e-20 103.2 101 58.4
CSS0031087 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 2.3e-20 102.8 99 55.6
TPR.G22687 Trifolium pratense HOM05D003027 ORTHO05D003455 3.0e-20 102.4 96 58.3
Aqoxy1G00075 Aquilegia oxysepala HOM05D003027 ORTHO05D003455 5.2e-20 101.7 101 56.4
TWI77G0499 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 5.2e-20 101.7 106 54.7
Lj1g0009474 Lotus japonicus HOM05D003027 ORTHO05D003455 8.8e-20 100.9 96 57.3
Lalb_Chr14g0365581 Lupinus albus HOM05D003027 ORTHO05D003455 8.8e-20 100.9 96 57.3
Phvul.001G119300 Phaseolus vulgaris HOM05D003027 ORTHO05D003455 8.8e-20 100.9 98 59.2
Aa31LG10G11460 Aethionema arabicum HOM05D003027 ORTHO05D003455 2.0e-19 99.8 87 60.9
FAN12G2249 Fragaria x ananassa HOM05D003027 ORTHO05D003455 3.3e-19 99.0 111 53.2
BcaC02g09858 Brassica carinata HOM05D003027 ORTHO05D003455 4.4e-19 98.6 104 60.6
Ciclev10011169m.g Citrus clementina HOM05D003027 ORTHO05D003455 4.4e-19 98.6 96 60.4
FAN07G2582 Fragaria x ananassa HOM05D003027 ORTHO05D003455 4.4e-19 98.6 111 53.2
FAN17G2150 Fragaria x ananassa HOM05D003027 ORTHO05D003455 4.4e-19 98.6 111 52.3
RcHm_v2.0_Chr4g0433931 Rosa chinensis HOM05D003027 ORTHO05D003455 4.4e-19 98.6 98 59.2
ECA248G3907 Erigeron canadensis HOM05D003027 ORTHO05D003455 5.7e-19 98.2 100 59.0
Peaxi162Scf00076g00222 Petunia axillaris HOM05D003027 ORTHO05D003455 5.7e-19 98.2 99 52.5
arahy.Tifrunner.gnm1.ann1.1QMW5J Arachis hypogaea HOM05D003027 ORTHO05D003455 7.4e-19 97.8 96 56.2
MSTRG.19782 Avicennia marina HOM05D003027 ORTHO05D003455 7.4e-19 97.8 102 56.9
Glyma.03G123200 Glycine max HOM05D003027 ORTHO05D003455 7.4e-19 97.8 98 59.2
FvH4_4g26350 Fragaria vesca HOM05D003027 ORTHO05D003455 9.7e-19 97.4 111 52.3
Glyma.19G126800 Glycine max HOM05D003027 ORTHO05D003455 9.7e-19 97.4 98 58.2
HanXRQChr03g0061511 Helianthus annuus HOM05D003027 ORTHO05D003455 9.7e-19 97.4 105 57.1
arahy.Tifrunner.gnm1.ann1.470EJV Arachis hypogaea HOM05D003027 ORTHO05D003455 1.3e-18 97.1 96 56.2
FAN22G1384 Fragaria x ananassa HOM05D003027 ORTHO05D003455 1.3e-18 97.1 111 52.3
Hma1.2p1_1246F.1_g270160 Hydrangea macrophylla HOM05D003027 ORTHO05D003455 1.3e-18 97.1 94 57.4
Manes.08G062800 Manihot esculenta HOM05D003027 ORTHO05D003455 1.7e-18 96.7 98 56.1
Nitab4.5_0005963g0050 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.7e-18 96.7 104 51.0
Psat0s1940g0120 Pisum sativum HOM05D003027 ORTHO05D003455 1.7e-18 96.7 90 58.9
Sed0023009 Sechium edule HOM05D003027 ORTHO05D003455 1.7e-18 96.7 99 52.5
C04p35840 Brassica napus HOM05D003027 ORTHO05D003455 2.2e-18 96.3 104 59.6
BolC4t25216H Brassica oleracea HOM05D003027 ORTHO05D003455 2.2e-18 96.3 104 59.6
Thhalv10005827m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 3.7e-18 95.5 105 58.1
FAN12G3806 Fragaria x ananassa HOM05D003027 ORTHO05D003455 6.3e-18 94.7 111 53.2
PGR042G3138 Punica granatum HOM05D003027 ORTHO05D003455 8.2e-18 94.4 105 51.4
TWI53G2142 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 8.2e-18 94.4 99 53.5
Sopen10g028950 Solanum pennellii HOM05D003027 ORTHO05D003455 1.4e-17 93.6 99 53.5
Lj2A408G49 Lonicera japonica HOM05D003027 ORTHO05D003455 2.4e-17 92.8 98 55.1
Peaxi162Scf00003g05235 Petunia axillaris HOM05D003027 ORTHO05D003455 2.4e-17 92.8 99 52.5
PGSC0003DMG400007175 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.4e-17 92.8 99 53.5
vmacro08992 Vaccinium macrocarpon HOM05D003027 ORTHO05D003455 2.4e-17 92.8 102 55.9
Migut.J01624 Erythranthe guttata HOM05D003027 ORTHO05D003455 4.1e-17 92.0 103 55.3
MSTRG.26171 Avicennia marina HOM05D003027 ORTHO05D003455 5.3e-17 91.7 103 51.5
DCAR_013537 Daucus carota HOM05D003027 ORTHO05D003455 7.0e-17 91.3 99 52.5
SalBow6G5171 Salvia bowleyana HOM05D003027 ORTHO05D003455 9.1e-17 90.9 95 56.8
EL10Ac3g07277 Beta vulgaris HOM05D003027 ORTHO05D003455 2.0e-16 89.7 98 52.0
unitig_744.g24169 Utricularia gibba HOM05D003027 ORTHO05D003455 3.5e-16 89.0 98 54.1
BcaC07g37745 Brassica carinata HOM05D003027 ORTHO05D003455 4.5e-16 88.6 48 89.6
HanXRQChr13g0388001 Helianthus annuus HOM05D003027 ORTHO05D003455 4.5e-16 88.6 110 51.8
Sc25g0005470 Simmondsia chinensis HOM05D003027 ORTHO05D003455 7.7e-16 87.8 94 53.2
TWI74G0015 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 1.0e-15 87.4 99 52.5
unitig_21.g20679 Utricularia gibba HOM05D003027 ORTHO05D003455 1.0e-15 87.4 100 53.0
CAN.G960.76 Capsicum annuum HOM05D003027 ORTHO05D003455 1.3e-15 87.0 102 49.0
Nitab4.5_0000869g0140 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.7e-15 86.7 104 51.0
Hund24551 Selenicereus undatus HOM05D003027 ORTHO05D003455 1.7e-15 86.7 99 51.5
THA.LOC104816495 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 2.2e-15 86.3 100 49.0
MSTRG.6308 Avicennia marina HOM05D003027 ORTHO05D003455 2.9e-15 85.9 101 50.5
Nitab4.5_0004697g0100 Nicotiana tabacum HOM05D003027 ORTHO05D003455 3.8e-15 85.5 98 51.0
TAR623G0586 Trochodendron aralioides HOM05D003027 ORTHO05D003455 3.8e-15 85.5 92 54.3
CAN.G569.64 Capsicum annuum HOM05D003027 ORTHO05D003455 6.5e-15 84.7 92 54.3
CARHR085360 Cardamine hirsuta HOM05D003027 ORTHO05D003455 1.9e-14 83.2 104 50.0
Thhalv10020207m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 1.9e-14 83.2 103 51.5
SGA_v2.0_scaffold66G22290 Striga asiatica HOM05D003027 ORTHO05D003455 1.9e-14 83.2 102 50.0
Os05g0411300 Oryza sativa ssp. japonica HOM05D003027 ORTHO05D003455 2.5e-14 82.8 101 49.5
SGA_v2.0_scaffold106G30539 Striga asiatica HOM05D003027 ORTHO05D003455 2.5e-14 82.8 102 52.9
AT3G10800 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 3.2e-14 82.4 102 50.0
PSO339G5716 Papaver somniferum HOM05D003027 ORTHO05D003455 5.5e-14 81.6 98 51.0
Zm00001eb110370 Zea mays HOM05D003027 ORTHO05D003455 5.5e-14 81.6 86 59.3
Ah.13g077130 Amaranthus hybridus HOM05D003027 ORTHO05D003455 7.2e-14 81.3 100 50.0
BcaB04g21174 Brassica carinata HOM05D003027 ORTHO05D003455 7.2e-14 81.3 110 47.3
SGA_v2.0_scaffold69G23173 Striga asiatica HOM05D003027 ORTHO05D003455 9.4e-14 80.9 113 47.8
Oeu022988.1 Olea europaea HOM05D003027 ORTHO05D003455 1.6e-13 80.1 94 51.1
A09p34290 Brassica napus HOM05D003027 ORTHO05D003455 2.1e-13 79.7 108 50.0
BraA09t38974Z Brassica rapa HOM05D003027 ORTHO05D003455 2.1e-13 79.7 108 50.0
Zm00001eb288060 Zea mays HOM05D003027 ORTHO05D003455 2.1e-13 79.7 95 49.5
Actinidia17700 Actinidia chinensis HOM05D003027 ORTHO05D003455 2.7e-13 79.3 99 50.5
AL3G22300 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 2.7e-13 79.3 102 49.0
Cpa.g.sc92.68 Carica papaya HOM05D003027 ORTHO05D003455 2.7e-13 79.3 53 77.4
Carub.0003s1003 Capsella rubella HOM05D003027 ORTHO05D003455 3.6e-13 79.0 103 49.5
Lsat_1_v5_gn_5_157880 Lactuca sativa HOM05D003027 ORTHO05D003455 4.7e-13 78.6 103 47.6
Manes.09G000300 Manihot esculenta HOM05D003027 ORTHO05D003455 4.7e-13 78.6 98 49.0
Ah.04g150710 Amaranthus hybridus HOM05D003027 ORTHO05D003455 6.1e-13 78.2 98 46.9
BcaB02g08358 Brassica carinata HOM05D003027 ORTHO05D003455 6.1e-13 78.2 99 56.6
BraA01t04221Z Brassica rapa HOM05D003027 ORTHO05D003455 6.1e-13 78.2 108 48.1
C04p20520 Brassica napus HOM05D003027 ORTHO05D041698 1.8e-12 76.6 143 41.3
Nitab4.5_0000123g0440 Nicotiana tabacum HOM05D003027 ORTHO05D003455 2.3e-12 76.3 98 48.0
Os07g0644100 Oryza sativa ssp. japonica HOM05D003027 ORTHO05D003455 2.3e-12 76.3 97 50.5
BolC1t05352H Brassica oleracea HOM05D003027 ORTHO05D003455 4.0e-12 75.5 106 49.1
PSO384G3381 Papaver somniferum HOM05D003027 ORTHO05D003455 5.2e-12 75.1 97 50.5
Sp3g09120 Schrenkiella parvula HOM05D003027 ORTHO05D003455 5.2e-12 75.1 103 50.5
AUR62018385 Chenopodium quinoa HOM05D003027 ORTHO05D003455 6.7e-12 74.7 91 47.3
Lalb_Chr22g0357801 Lupinus albus HOM05D003027 ORTHO05D003455 6.7e-12 74.7 96 51.0
Sopen04g025410 Solanum pennellii HOM05D003027 ORTHO05D003455 1.5e-11 73.6 98 45.9
Aa31LG3G3720 Aethionema arabicum HOM05D003027 ORTHO05D003455 2.0e-11 73.2 102 51.0
MBI19_g04333_MAGBIO Magnolia biondii HOM05D003027 ORTHO05D003455 2.6e-11 72.8 107 48.6
Solyc04g051060.2 Solanum lycopersicum HOM05D003027 ORTHO05D003455 2.6e-11 72.8 92 47.8
AUR62030278 Chenopodium quinoa HOM05D003027 ORTHO05D003455 3.3e-11 72.4 93 46.2
HPP92_002082 Vanilla planifolia HOM05D003027 ORTHO05D003455 7.5e-11 71.2 91 49.5
Solyc04g056490.3 Solanum lycopersicum HOM05D003027 ORTHO05D003455 1.3e-10 70.5 98 44.9
CDE08G1650 Ceratophyllum demersum HOM05D003027 ORTHO05D003455 2.2e-10 69.7 105 46.7
Glyma.07G017800 Glycine max HOM05D003027 ORTHO05D003455 2.8e-10 69.3 88 48.9
ATR0307G054 Amborella trichopoda HOM05D003027 ORTHO05D003455 1.1e-09 67.4 100 49.0
A04p03460 Brassica napus HOM05D003027 ORTHO05D003455 2.4e-09 66.2 102 48.0
BraA04t16091Z Brassica rapa HOM05D003027 ORTHO05D003455 2.4e-09 66.2 102 48.0
PGSC0003DMG400039820 Solanum tuberosum HOM05D003027 ORTHO05D003455 2.4e-09 66.2 98 44.9
Sopen04g025360 Solanum pennellii HOM05D003027 ORTHO05D003455 5.3e-09 65.1 98 43.9
BolC4t23577H Brassica oleracea HOM05D003027 ORTHO05D041698 9.1e-09 64.3 37 81.1
Solyc04g056460.2 Solanum lycopersicum HOM05D003027 ORTHO05D003455 1.7e-07 60.1 99 42.4
Sopen04g022340 Solanum pennellii HOM05D003027 ORTHO05D003455 5.0e-07 58.5 66 53.0
CDE08G0069 Ceratophyllum demersum HOM05D003027 ORTHO05D003455 8.5e-07 57.8 93 44.1
Solyc03g013450.3 Solanum lycopersicum HOM05D003027 ORTHO05D003455 3.2e-06 55.8 87 44.8
HPP92_002076 Vanilla planifolia HOM05D003027 ORTHO05D003455 4.2e-06 55.5 84 44.0


User provided reference genes

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