Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p26390 Brassica napus HOM05D000472 ORTHO05D033194 3.7e-41 171.0 80 100.0
BolC9t55541H Brassica oleracea HOM05D000472 ORTHO05D033194 9.3e-37 156.4 80 93.8
AL1G61780 Arabidopsis lyrata HOM05D000472 ORTHO05D000344 4.8e-17 90.9 60 71.7
C06p14730 Brassica napus HOM05D000472 ORTHO05D000344 8.2e-17 90.1 57 75.4
BolC6t36653H Brassica oleracea HOM05D000472 ORTHO05D000344 8.2e-17 90.1 57 75.4
A05p18380 Brassica napus HOM05D000472 ORTHO05D000344 1.1e-16 89.7 61 70.5
BraA05t20728Z Brassica rapa HOM05D000472 ORTHO05D000344 1.1e-16 89.7 61 70.5
AT1G53320 Arabidopsis thaliana HOM05D000472 ORTHO05D000344 1.4e-16 89.4 59 71.2
Sp1g39900 Schrenkiella parvula HOM05D000472 ORTHO05D000344 1.4e-16 89.4 59 71.2
Carub.0001s4250 Capsella rubella HOM05D000472 ORTHO05D000344 2.4e-16 88.6 59 71.2
Aa31LG10G1830 Aethionema arabicum HOM05D000472 ORTHO05D000344 3.1e-16 88.2 59 69.5
BcaC08g44075 Brassica carinata HOM05D000472 ORTHO05D000344 4.1e-16 87.8 61 68.9
CARHR043550 Cardamine hirsuta HOM05D000472 ORTHO05D000344 4.1e-16 87.8 59 69.5
BcaB04g17090 Brassica carinata HOM05D000472 ORTHO05D000344 5.3e-16 87.4 59 69.5
Thhalv10011566m.g Eutrema salsugineum HOM05D000472 ORTHO05D000344 7.0e-16 87.0 59 69.5
BcaB02g10948 Brassica carinata HOM05D000472 ORTHO05D000344 1.2e-15 86.3 59 69.5
BcaC01g01382 Brassica carinata HOM05D000472 ORTHO05D000344 1.2e-15 86.3 59 67.8
A08p01640 Brassica napus HOM05D000472 ORTHO05D000344 1.2e-15 86.3 59 67.8
C03p91430 Brassica napus HOM05D000472 ORTHO05D000344 1.2e-15 86.3 59 67.8
BolC3t21462H Brassica oleracea HOM05D000472 ORTHO05D000344 1.2e-15 86.3 59 67.8
BraA08t32217Z Brassica rapa HOM05D000472 ORTHO05D000344 1.2e-15 86.3 59 67.8
THA.LOC104822567 Tarenaya hassleriana HOM05D000472 ORTHO05D000344 2.6e-15 85.1 59 66.1
THA.LOC104810438 Tarenaya hassleriana HOM05D000472 ORTHO05D000344 4.5e-15 84.3 55 70.9
Cpa.g.sc77.12 Carica papaya HOM05D000472 ORTHO05D000344 6.5e-14 80.5 59 62.7
Thecc.07G117400 Theobroma cacao HOM05D000472 ORTHO05D000344 4.2e-13 77.8 60 56.7
Duzib213G0137 Durio zibethinus HOM05D000472 ORTHO05D000344 2.1e-12 75.5 59 55.9
PGR083G2693 Punica granatum HOM05D000472 ORTHO05D000344 2.1e-12 75.5 59 57.6
Gohir.A01G054000 Gossypium hirsutum HOM05D000472 ORTHO05D000344 3.6e-12 74.7 60 55.0
Gohir.D01G042716 Gossypium hirsutum HOM05D000472 ORTHO05D000344 3.6e-12 74.7 60 55.0
Gorai.002G054300 Gossypium raimondii HOM05D000472 ORTHO05D000344 3.6e-12 74.7 60 55.0
Duzib187G0780 Durio zibethinus HOM05D000472 ORTHO05D000344 8.0e-12 73.6 60 53.3
MD03G1243700 Malus domestica HOM05D000472 ORTHO05D000344 8.0e-12 73.6 59 55.9
Manes.15G095300 Manihot esculenta HOM05D000472 ORTHO05D000344 8.0e-12 73.6 59 55.9
COL.COLO4_17539 Corchorus olitorius HOM05D000472 ORTHO05D000344 1.0e-11 73.2 60 55.0
MD11G1264200 Malus domestica HOM05D000472 ORTHO05D000344 1.0e-11 73.2 59 55.9
Manes.03G100600 Manihot esculenta HOM05D000472 ORTHO05D000344 1.0e-11 73.2 59 55.9
Ciclev10020367m.g Citrus clementina HOM05D000472 ORTHO05D000344 1.8e-11 72.4 59 55.9
Potri.001G390200 Populus trichocarpa HOM05D000472 ORTHO05D000344 1.8e-11 72.4 66 51.5
Dinv14996 Davidia involucrata HOM05D000472 ORTHO05D000344 2.3e-11 72.0 59 52.5
MELO3C016130.2 Cucumis melo HOM05D000472 ORTHO05D000344 4.0e-11 71.2 60 53.3
arahy.Tifrunner.gnm1.ann1.KKY0JA Arachis hypogaea HOM05D000472 ORTHO05D000344 5.2e-11 70.9 59 52.5
arahy.Tifrunner.gnm1.ann1.MM1CBR Arachis hypogaea HOM05D000472 ORTHO05D000344 5.2e-11 70.9 59 52.5
GSVIVG01014191001 Vitis vinifera HOM05D000472 ORTHO05D000344 6.7e-11 70.5 59 52.5
Ca_03972_v3 Cicer arietinum L. HOM05D000472 ORTHO05D000344 8.8e-11 70.1 59 52.5
Sabra16G0255700 Salix brachista HOM05D000472 ORTHO05D000344 8.8e-11 70.1 69 49.3
TPR.G13951 Trifolium pratense HOM05D000472 ORTHO05D000344 8.8e-11 70.1 59 52.5
CsaV3_4G008060 Cucumis sativus L. HOM05D000472 ORTHO05D000344 1.5e-10 69.3 59 52.5
FAN21G0921 Fragaria x ananassa HOM05D000472 ORTHO05D000344 1.5e-10 69.3 59 52.5
Sc03g0010530 Simmondsia chinensis HOM05D000472 ORTHO05D000344 1.5e-10 69.3 59 50.8
EL10Ac4g08350 Beta vulgaris HOM05D000472 ORTHO05D000344 2.0e-10 68.9 61 52.5
Glyma.13G269600 Glycine max HOM05D000472 ORTHO05D000344 2.0e-10 68.9 59 50.8
HanXRQChr10g0304911 Helianthus annuus HOM05D000472 ORTHO05D000344 2.0e-10 68.9 61 50.8
Prupe.4G164400 Prunus persica HOM05D000472 ORTHO05D000344 2.0e-10 68.9 59 54.2
Cfa019564 Carpinus fangiana HOM05D000472 ORTHO05D000344 2.6e-10 68.6 61 52.5
ClCG07G010280 Citrullus lanatus HOM05D000472 ORTHO05D000344 2.6e-10 68.6 57 54.4
Haze_09321 Corylus avellana HOM05D000472 ORTHO05D000344 2.6e-10 68.6 61 52.5
Duzib268G1231 Durio zibethinus HOM05D000472 ORTHO05D000344 2.6e-10 68.6 60 51.7
Glyma.12G230000 Glycine max HOM05D000472 ORTHO05D000344 2.6e-10 68.6 59 50.8
Phvul.005G082200 Phaseolus vulgaris HOM05D000472 ORTHO05D000344 2.6e-10 68.6 59 50.8
TWI38G2260 Tripterygium wilfordii HOM05D000472 ORTHO05D000344 2.6e-10 68.6 59 54.2
VMungo1080G0361 Vigna mungo HOM05D000472 ORTHO05D000344 2.6e-10 68.6 59 50.8
Actinidia09805 Actinidia chinensis HOM05D000472 ORTHO05D000344 3.3e-10 68.2 59 50.8
Ah.06g185400 Amaranthus hybridus HOM05D000472 ORTHO05D000344 3.3e-10 68.2 59 52.5
Potri.011G109300 Populus trichocarpa HOM05D000472 ORTHO05D000344 3.3e-10 68.2 68 47.1
RcHm_v2.0_Chr5g0030871 Rosa chinensis HOM05D000472 ORTHO05D000344 3.3e-10 68.2 59 50.8
Eucgr.F01244 Eucalyptus grandis HOM05D000472 ORTHO05D000344 4.4e-10 67.8 59 50.8
Sabra11G0096800 Salix brachista HOM05D000472 ORTHO05D000344 4.4e-10 67.8 65 47.7
CAN.G375.18 Capsicum annuum HOM05D000472 ORTHO05D000344 5.7e-10 67.4 61 49.2
HanXRQChr15g0495251 Helianthus annuus HOM05D000472 ORTHO05D000344 5.7e-10 67.4 61 47.5
TWI39G0110 Tripterygium wilfordii HOM05D000472 ORTHO05D000344 5.7e-10 67.4 59 54.2
CiPaw.11G160100 Carya illinoinensis HOM05D000472 ORTHO05D000344 7.5e-10 67.0 61 50.8
FAN25G3006 Fragaria x ananassa HOM05D000472 ORTHO05D000344 7.5e-10 67.0 59 50.8
Lalb_Chr25g0285861 Lupinus albus HOM05D000472 ORTHO05D000344 7.5e-10 67.0 59 50.8
Hund10513 Selenicereus undatus HOM05D000472 ORTHO05D000344 7.5e-10 67.0 61 49.2
Sc16g0007650 Simmondsia chinensis HOM05D000472 ORTHO05D000344 7.5e-10 67.0 59 50.8
Atru.chr2.2109 Acer truncatum HOM05D000472 ORTHO05D000344 9.7e-10 66.6 61 50.8
Gohir.A08G234300 Gossypium hirsutum HOM05D000472 ORTHO05D000344 9.7e-10 66.6 59 50.8
Gorai.004G271800 Gossypium raimondii HOM05D000472 ORTHO05D000344 9.7e-10 66.6 59 50.8
Lsat_1_v5_gn_7_102620 Lactuca sativa HOM05D000472 ORTHO05D000344 9.7e-10 66.6 61 50.8
MBI06_g08608_MAGBIO Magnolia biondii HOM05D000472 ORTHO05D000344 9.7e-10 66.6 59 52.5
Aqoxy1G02034 Aquilegia oxysepala HOM05D000472 ORTHO05D000344 1.3e-09 66.2 61 50.8
Sed0012800 Sechium edule HOM05D000472 ORTHO05D000344 1.3e-09 66.2 59 52.5
Gohir.A04G042400 Gossypium hirsutum HOM05D000472 ORTHO05D000344 1.7e-09 65.9 60 50.0
Gohir.D05G340800 Gossypium hirsutum HOM05D000472 ORTHO05D000344 1.7e-09 65.9 60 50.0
Gorai.009G367200 Gossypium raimondii HOM05D000472 ORTHO05D000344 1.7e-09 65.9 60 50.0
Peaxi162Scf00111g01456 Petunia axillaris HOM05D000472 ORTHO05D000344 1.7e-09 65.9 61 47.5
CSS0037240 Camellia sinensis var. sinensis HOM05D000472 ORTHO05D000344 2.2e-09 65.5 59 49.2
CiPaw.12G113400 Carya illinoinensis HOM05D000472 ORTHO05D000344 2.2e-09 65.5 61 49.2
FvH4_3g18250 Fragaria vesca HOM05D000472 ORTHO05D000344 2.2e-09 65.5 59 50.8
FAN11G0432 Fragaria x ananassa HOM05D000472 ORTHO05D000344 2.2e-09 65.5 59 50.8
FAN16G3423 Fragaria x ananassa HOM05D000472 ORTHO05D000344 2.2e-09 65.5 59 50.8
PSO229G0161 Papaver somniferum HOM05D000472 ORTHO05D000344 2.8e-09 65.1 59 49.2
PSO675G5860 Papaver somniferum HOM05D000472 ORTHO05D000344 2.8e-09 65.1 59 49.2
Solyc07g062390.4 Solanum lycopersicum HOM05D000472 ORTHO05D000344 2.8e-09 65.1 61 47.5
Sopen07g030640 Solanum pennellii HOM05D000472 ORTHO05D000344 2.8e-09 65.1 61 47.5
PGSC0003DMG400007069 Solanum tuberosum HOM05D000472 ORTHO05D000344 2.8e-09 65.1 61 47.5
AUR62019581 Chenopodium quinoa HOM05D000472 ORTHO05D000344 3.7e-09 64.7 61 47.5
Gohir.D08G254700 Gossypium hirsutum HOM05D000472 ORTHO05D000344 3.7e-09 64.7 59 49.2
MBI07_g09561_MAGBIO Magnolia biondii HOM05D000472 ORTHO05D000344 3.7e-09 64.7 61 47.5
Lsat_1_v5_gn_5_126580 Lactuca sativa HOM05D000472 ORTHO05D000344 4.8e-09 64.3 59 49.2
Lalb_Chr19g0133811 Lupinus albus HOM05D000472 ORTHO05D000344 4.8e-09 64.3 59 47.5
Sed0011791 Sechium edule HOM05D000472 ORTHO05D000344 4.8e-09 64.3 59 50.8
Medtr2g076200 Medicago truncatula HOM05D000472 ORTHO05D000344 6.3e-09 63.9 59 47.5
Nitab4.5_0006953g0060 Nicotiana tabacum HOM05D000472 ORTHO05D000344 6.3e-09 63.9 61 45.9
TAR624G0743 Trochodendron aralioides HOM05D000472 ORTHO05D000344 6.3e-09 63.9 59 49.2
CSS0038329 Camellia sinensis var. sinensis HOM05D000472 ORTHO05D000344 8.2e-09 63.5 59 52.5
vmacro11944 Vaccinium macrocarpon HOM05D000472 ORTHO05D000344 1.1e-08 63.2 59 49.2
Hma1.2p1_1016F.1_g248070 Hydrangea macrophylla HOM05D000472 ORTHO05D000344 1.4e-08 62.8 59 47.5
Medtr2g076210 Medicago truncatula HOM05D000472 ORTHO05D000344 2.4e-08 62.0 59 45.8
Psat7g131840 Pisum sativum HOM05D000472 ORTHO05D033194 2.4e-08 62.0 54 46.3
Cc05_g11040 Coffea canephora HOM05D000472 ORTHO05D000344 3.1e-08 61.6 63 47.6
Os01g0674500 Oryza sativa ssp. japonica HOM05D000472 ORTHO05D000344 3.1e-08 61.6 59 47.5
CANSAT35G1971 Cannabis sativa HOM05D000472 ORTHO05D000344 4.1e-08 61.2 59 47.5
Hma1.2p1_2217F.1_g317260 Hydrangea macrophylla HOM05D000472 ORTHO05D000344 4.1e-08 61.2 61 49.2
Os05g0560400 Oryza sativa ssp. japonica HOM05D000472 ORTHO05D000344 5.3e-08 60.8 59 44.1
HPP92_024046 Vanilla planifolia HOM05D000472 ORTHO05D000344 5.3e-08 60.8 59 47.5
ECA234G0673 Erigeron canadensis HOM05D004094 ORTHO05D004601 7.0e-08 60.5 59 45.8
Hma1.2p1_0290F.1_g114890 Hydrangea macrophylla HOM05D000472 ORTHO05D000344 7.0e-08 60.5 61 47.5
Lj1A829T30 Lonicera japonica HOM05D000472 ORTHO05D000344 7.0e-08 60.5 61 47.5
Lalb_Chr01g0016581 Lupinus albus HOM05D000472 ORTHO05D000344 7.0e-08 60.5 59 45.8
Nn1g09163 Nelumbo nucifera HOM05D000472 ORTHO05D000344 1.2e-07 59.7 61 47.5
THA.LOC104812321 Tarenaya hassleriana HOM05D000472 ORTHO05D000344 1.2e-07 59.7 67 44.8
QL08p026190 Quercus lobata HOM05D000472 ORTHO05D000344 1.6e-07 59.3 64 45.3
CDE02G0822 Ceratophyllum demersum HOM05D000472 ORTHO05D000344 2.0e-07 58.9 59 50.8
TAR627G1194 Trochodendron aralioides HOM05D000472 ORTHO05D000344 2.0e-07 58.9 59 49.2
Zm00001eb360160 Zea mays HOM05D000472 ORTHO05D000344 2.0e-07 58.9 59 47.5
Os01g0759100 Oryza sativa ssp. japonica HOM05D000472 ORTHO05D000344 2.7e-07 58.5 59 47.5
THA.LOC104813999 Tarenaya hassleriana HOM05D000472 ORTHO05D000344 3.5e-07 58.2 69 40.6
Ah.04g164230 Amaranthus hybridus HOM05D000472 ORTHO05D000344 4.5e-07 57.8 59 42.4
CDE09G0106 Ceratophyllum demersum HOM05D000472 ORTHO05D000344 7.7e-07 57.0 59 45.8
Manes.05G067900 Manihot esculenta HOM05D000472 ORTHO05D000344 1.0e-06 56.6 59 45.8
SalBow7G2559 Salvia bowleyana HOM05D000472 ORTHO05D000344 1.3e-06 56.2 61 44.3
MSTRG.14235 Avicennia marina HOM05D000472 ORTHO05D000344 1.7e-06 55.8 59 45.8
SGA_v2.0_scaffold130G34291 Striga asiatica HOM05D000472 ORTHO05D000344 1.7e-06 55.8 61 44.3
Os05g0514300 Oryza sativa ssp. japonica HOM05D000472 ORTHO05D000344 2.2e-06 55.5 59 42.4
SEGI_04287 Sequoiadendron giganteum HOM05D000472 ORTHO05D000344 2.9e-06 55.1 54 48.1
Zm00001eb292770 Zea mays HOM05D000472 ORTHO05D000344 2.9e-06 55.1 60 41.7
CDE02G2009 Ceratophyllum demersum HOM05D000472 ORTHO05D000344 3.8e-06 54.7 59 44.1
Manes.01G214100 Manihot esculenta HOM05D000472 ORTHO05D000344 3.8e-06 54.7 60 45.0
TAR365G1162 Trochodendron aralioides HOM05D000472 ORTHO05D000344 3.8e-06 54.7 59 45.8
TAR636G2343 Trochodendron aralioides HOM05D000472 ORTHO05D000344 5.0e-06 54.3 61 45.9
CANSAT25G1501 Cannabis sativa HOM05D000472 ORTHO05D000344 6.5e-06 53.9 59 44.1
Duzib211G0590 Durio zibethinus HOM05D000472 ORTHO05D000344 6.5e-06 53.9 59 45.8
TPR.G16958 Trifolium pratense HOM05D000472 ORTHO05D000344 6.5e-06 53.9 59 42.4
Duzib133G1095 Durio zibethinus HOM05D000472 ORTHO05D000344 8.5e-06 53.5 59 45.8
PGR015G0003 Punica granatum HOM05D000472 ORTHO05D000344 8.5e-06 53.5 60 41.7
PGR104G0006 Punica granatum HOM05D000472 ORTHO05D000344 8.5e-06 53.5 60 41.7


User provided reference genes

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