Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p25930 Brassica napus HOM05D007216 ORTHO05D009261 4.9e-126 454.5 236 100.0
BolC9t55498H Brassica oleracea HOM05D007216 ORTHO05D009261 2.9e-118 428.7 222 100.0
BcaC04g21907 Brassica carinata HOM05D007216 ORTHO05D009261 2.4e-112 409.1 213 99.5
A09p20520 Brassica napus HOM05D007216 ORTHO05D009261 3.4e-111 405.2 221 97.3
BraA09t37658Z Brassica rapa HOM05D007216 ORTHO05D009261 3.3e-106 388.7 213 95.3
BcaB07g31004 Brassica carinata HOM05D007216 ORTHO05D009261 4.2e-93 345.1 213 85.9
SpUn0744_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 7.4e-90 334.3 218 82.6
Thhalv10003353m.g Eutrema salsugineum HOM05D007216 ORTHO05D009261 4.1e-88 328.6 217 80.2
AL390U10010 Arabidopsis lyrata HOM05D007216 ORTHO05D009261 1.1e-80 303.9 217 75.1
BraA06t27645Z Brassica rapa HOM05D007216 ORTHO05D009261 1.0e-78 297.4 232 72.8
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 1.7e-78 296.6 216 75.0
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 1.7e-78 296.6 216 75.9
CARHR006300 Cardamine hirsuta HOM05D007216 ORTHO05D009261 2.2e-78 296.2 218 71.1
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 7.2e-77 291.2 216 75.0
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 7.2e-77 291.2 216 75.0
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 7.2e-77 291.2 216 75.0
AT5G43650 Arabidopsis thaliana HOM05D007216 ORTHO05D009261 3.3e-74 282.3 219 71.7
Carub.0008s0499 Capsella rubella HOM05D007216 ORTHO05D009261 4.3e-74 282.0 214 71.5
SpUn0429_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 3.2e-69 265.8 218 69.3
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 1.7e-57 226.9 213 57.3
THA.LOC104827376 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 4.9e-41 172.2 207 47.8
THA.LOC104801097 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 4.3e-37 159.1 247 40.1
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 1.5e-34 150.6 218 44.5
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 2.6e-34 149.8 203 42.9
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 3.4e-34 149.4 218 44.0
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 4.9e-33 145.6 220 39.5
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 8.3e-33 144.8 183 44.3
Atru.chr4.2233 Acer truncatum HOM05D007216 ORTHO05D009261 9.2e-32 141.4 214 40.7
CiPaw.02G116600 Carya illinoinensis HOM05D007216 ORTHO05D009261 3.5e-31 139.4 186 44.1
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 5.9e-31 138.7 218 41.3
Duzib212G0514 Durio zibethinus HOM05D007216 ORTHO05D009261 1.3e-30 137.5 212 40.1
QL06p015621 Quercus lobata HOM05D007216 ORTHO05D009261 1.7e-30 137.1 220 39.1
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 3.9e-30 136.0 217 39.2
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 6.6e-30 135.2 206 41.7
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 6.6e-30 135.2 186 45.7
Peaxi162Scf00813g00118 Petunia axillaris HOM05D007216 ORTHO05D009261 6.6e-30 135.2 195 41.5
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 1.1e-29 134.4 195 41.0
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 1.9e-29 133.7 195 40.5
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 2.5e-29 133.3 161 47.2
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 3.3e-29 132.9 160 45.6
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 4.3e-29 132.5 189 42.3
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 1.2e-28 131.0 219 38.8
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 1.2e-28 131.0 161 46.6
Manes.03G169100 Manihot esculenta HOM05D007216 ORTHO05D009261 1.2e-28 131.0 219 37.9
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 1.6e-28 130.6 166 44.6
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 1.6e-28 130.6 221 38.5
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 1.6e-28 130.6 223 39.9
Oeu008788.2 Olea europaea HOM05D007216 ORTHO05D009261 6.2e-28 128.6 216 39.8
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 6.2e-28 128.6 174 43.1
Sabra08G0123600 Salix brachista HOM05D007216 ORTHO05D009261 1.0e-27 127.9 188 40.4
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 2.3e-27 126.7 178 41.0
Cc03_g04820 Coffea canephora HOM05D007216 ORTHO05D009261 3.1e-27 126.3 159 44.7
Gorai.006G246400 Gossypium raimondii HOM05D007216 ORTHO05D009261 3.1e-27 126.3 157 45.9
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 5.2e-27 125.6 219 38.4
Gohir.A09G222900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 6.8e-27 125.2 179 42.5
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 1.2e-26 124.4 220 40.5
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 1.5e-26 124.0 221 37.1
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 2.0e-26 123.6 180 46.1
TWI73G0753 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 2.0e-26 123.6 186 39.2
Gohir.D09G224900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 2.6e-26 123.2 153 45.8
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 4.4e-26 122.5 195 42.6
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 5.8e-26 122.1 217 37.3
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 5.8e-26 122.1 185 41.6
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 7.5e-26 121.7 149 47.0
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 2.2e-25 120.2 185 42.2
DCAR_027275 Daucus carota HOM05D007216 ORTHO05D009261 2.2e-25 120.2 183 38.3
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 1.1e-24 117.9 205 40.5
Dinv29914 Davidia involucrata HOM05D007216 ORTHO05D009261 1.4e-24 117.5 125 50.4
Glyma.02G000800 Glycine max HOM05D007216 ORTHO05D009261 1.9e-24 117.1 227 37.4
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 2.4e-24 116.7 195 40.5
COL.COLO4_15786 Corchorus olitorius HOM05D007216 ORTHO05D009261 5.4e-24 115.5 169 41.4
Sed0021571 Sechium edule HOM05D007216 ORTHO05D009261 9.2e-24 114.8 170 41.2
Lalb_Chr03g0037861 Lupinus albus HOM05D007216 ORTHO05D009261 2.0e-23 113.6 182 39.6
TWI09G1088 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 2.0e-23 113.6 182 36.8
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 2.7e-23 113.2 157 42.0
Sc13g0004990 Simmondsia chinensis HOM05D007216 ORTHO05D009261 7.8e-23 111.7 198 38.4
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 2.3e-22 110.2 167 39.5
ClCG06G006720 Citrullus lanatus HOM05D007216 ORTHO05D009261 2.3e-22 110.2 174 40.8
Nn1g02593 Nelumbo nucifera HOM05D007216 ORTHO05D009261 3.0e-22 109.8 191 39.8
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 5.0e-22 109.0 222 34.7
MELO3C026778.2 Cucumis melo HOM05D007216 ORTHO05D009261 5.0e-22 109.0 167 42.5
CsaV3_2G013060 Cucumis sativus L. HOM05D007216 ORTHO05D009261 5.0e-22 109.0 169 42.6
Sed0000846 Sechium edule HOM05D007216 ORTHO05D009261 5.0e-22 109.0 160 40.6
Sed0019243 Sechium edule HOM05D007216 ORTHO05D009261 6.6e-22 108.6 158 40.5
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 4.3e-21 105.9 223 35.9
Psat6g102240 Pisum sativum HOM05D007216 ORTHO05D009261 1.2e-20 104.4 220 36.8
DCAR_027276 Daucus carota HOM05D007216 ORTHO05D009261 4.7e-20 102.4 186 38.2
MSTRG.4097 Avicennia marina HOM05D007216 ORTHO05D009261 6.2e-20 102.1 220 31.8
Migut.G00433 Erythranthe guttata HOM05D007216 ORTHO05D009261 1.4e-19 100.9 179 35.8
Gorai.005G046700 Gossypium raimondii HOM05D007216 ORTHO05D009261 4.0e-19 99.4 139 42.4
Gohir.D02G042400 Gossypium hirsutum HOM05D007216 ORTHO05D009261 5.2e-19 99.0 139 42.4
Gohir.A02G035500 Gossypium hirsutum HOM05D007216 ORTHO05D009261 3.7e-17 92.8 134 41.8
Lj6C656T7 Lonicera japonica HOM05D007216 ORTHO05D009261 4.9e-17 92.4 208 33.7
Phvul.007G280700 Phaseolus vulgaris HOM05D007216 ORTHO05D009261 1.9e-16 90.5 154 39.6
TPR.G22479 Trifolium pratense HOM05D007216 ORTHO05D009261 5.4e-16 89.0 179 36.9
Hma1.2p1_0893F.1_g233480 Hydrangea macrophylla HOM05D007216 ORTHO05D009261 4.6e-15 85.9 85 57.6
CAN.G1007.15 Capsicum annuum HOM05D007216 ORTHO05D009261 3.9e-14 82.8 128 40.6
Nitab4.5_0004798g0070 Nicotiana tabacum HOM05D007216 ORTHO05D009261 5.1e-14 82.4 192 30.7
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 3.3e-13 79.7 134 37.3
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 7.3e-13 78.6 132 35.6
Dinv44631 Davidia involucrata HOM05D007216 ORTHO05D009261 3.6e-12 76.3 89 43.8
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 5.8e-10 68.9 219 31.1
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 9.9e-10 68.2 196 32.1
Aqoxy5G00327 Aquilegia oxysepala HOM05D007216 ORTHO05D009261 1.9e-08 63.9 98 37.8
Nitab4.5_0000525g0160 Nicotiana tabacum HOM05D007216 ORTHO05D009261 1.9e-08 63.9 192 27.6
SEGI_05727 Sequoiadendron giganteum HOM05D010622 ORTHO05D011909 3.5e-07 59.7 144 32.6
HPP92_027840 Vanilla planifolia HOM05D007216 ORTHO05D009261 6.0e-07 58.9 166 33.7
Lj5g0022580 Lotus japonicus HOM05D001604 ORTHO05D001432 8.6e-06 55.1 149 31.5


User provided reference genes

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