Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 5.3e-63 244.2 124 100.0
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 5.3e-63 244.2 124 100.0
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 5.3e-63 244.2 124 100.0
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 5.3e-63 244.2 124 100.0
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 5.3e-63 244.2 124 100.0
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 1.2e-62 243.0 124 99.2
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 2.0e-62 242.3 124 99.2
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 2.6e-62 241.9 124 98.4
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 2.9e-61 238.4 124 96.8
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 4.9e-61 237.7 124 95.2
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 6.5e-61 237.3 124 95.2
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 1.1e-60 236.5 124 96.0
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 4.6e-59 231.1 124 93.5
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 2.5e-57 225.3 121 91.7
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 1.6e-56 222.6 121 90.9
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 8.2e-56 220.3 120 93.3
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 1.4e-55 219.5 122 83.6
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 6.9e-55 217.2 121 86.8
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 2.0e-54 215.7 124 83.1
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 3.4e-54 214.9 123 82.9
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 4.5e-54 214.5 124 83.1
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 5.8e-54 214.2 124 83.1
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 1.0e-53 213.4 124 82.3
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.3e-53 213.0 124 82.3
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.3e-53 213.0 124 82.3
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 2.2e-53 212.2 124 82.3
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 5.0e-53 211.1 122 82.0
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 8.4e-53 210.3 124 83.9
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 1.1e-52 209.9 122 82.8
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 1.4e-52 209.5 122 83.6
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 3.2e-52 208.4 123 82.9
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 5.5e-52 207.6 123 82.9
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 5.5e-52 207.6 123 81.3
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 7.2e-52 207.2 123 82.1
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 9.3e-52 206.8 124 81.5
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 9.3e-52 206.8 122 82.8
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 1.6e-51 206.1 122 82.8
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 2.1e-51 205.7 123 81.3
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 3.5e-51 204.9 122 82.0
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 3.5e-51 204.9 122 80.3
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 4.6e-51 204.5 119 83.2
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 4.6e-51 204.5 119 83.2
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 6.1e-51 204.1 123 80.5
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 6.1e-51 204.1 124 80.6
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 6.1e-51 204.1 120 81.7
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 6.1e-51 204.1 123 79.7
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 7.9e-51 203.8 123 80.5
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 7.9e-51 203.8 122 79.5
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 1.0e-50 203.4 111 87.4
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 1.3e-50 203.0 119 82.4
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.8e-50 202.6 121 80.2
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 1.8e-50 202.6 122 81.1
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 1.8e-50 202.6 123 77.2
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 2.3e-50 202.2 120 80.0
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 2.3e-50 202.2 154 68.8
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 2.3e-50 202.2 122 80.3
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 3.0e-50 201.8 120 80.0
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 3.0e-50 201.8 120 80.0
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 3.0e-50 201.8 122 81.1
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 3.9e-50 201.4 122 80.3
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 3.9e-50 201.4 122 80.3
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 6.7e-50 200.7 123 78.0
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 8.7e-50 200.3 122 77.9
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 1.1e-49 199.9 120 78.3
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 1.1e-49 199.9 119 82.4
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 1.1e-49 199.9 122 79.5
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 1.5e-49 199.5 122 76.2
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 1.9e-49 199.1 122 78.7
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 1.9e-49 199.1 121 79.3
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 3.3e-49 198.4 109 87.2
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 4.3e-49 198.0 124 77.4
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 4.3e-49 198.0 119 77.3
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 5.7e-49 197.6 120 78.3
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 5.7e-49 197.6 120 76.7
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 5.7e-49 197.6 120 76.7
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 5.7e-49 197.6 123 77.2
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 5.7e-49 197.6 120 78.3
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 7.4e-49 197.2 120 77.5
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 7.4e-49 197.2 122 78.7
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 9.7e-49 196.8 120 77.5
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 1.3e-48 196.4 122 77.9
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 1.6e-48 196.1 122 77.0
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.6e-48 196.1 120 76.7
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 2.2e-48 195.7 119 76.5
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 3.7e-48 194.9 119 82.4
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 3.1e-47 191.8 122 75.4
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 5.3e-47 191.0 123 72.4
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 5.3e-47 191.0 124 75.0
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 5.3e-47 191.0 123 72.4
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 9.0e-47 190.3 122 73.8
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 9.0e-47 190.3 122 73.8
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 9.0e-47 190.3 123 70.7
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 9.0e-47 190.3 119 75.6
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 1.5e-46 189.5 124 76.6
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 2.0e-46 189.1 124 71.0
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 3.4e-46 188.3 124 75.0
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 3.4e-46 188.3 124 71.8
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 4.5e-46 188.0 124 75.0
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.3e-45 186.4 123 74.0
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 2.9e-45 185.3 123 74.0
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 3.8e-45 184.9 120 76.7
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 5.0e-45 184.5 124 69.4
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 1.1e-44 183.3 123 73.2
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 1.4e-44 183.0 107 89.7
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 1.9e-44 182.6 119 73.9
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 3.2e-44 181.8 120 71.7
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 4.2e-44 181.4 123 74.0
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 5.5e-44 181.0 123 74.0
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 1.2e-43 179.9 111 82.9
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 1.6e-43 179.5 129 65.9
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 3.6e-43 178.3 124 69.4
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 1.4e-42 176.4 120 68.3
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 8.8e-42 173.7 124 68.5
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 1.5e-41 172.9 124 67.7
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 1.7e-40 169.5 123 65.9
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 2.2e-40 169.1 122 71.3
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 2.2e-40 169.1 122 71.3
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 2.8e-40 168.7 121 68.6
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 3.7e-40 168.3 124 65.3
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 4.8e-40 167.9 122 68.9
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 4.5e-38 161.4 120 71.7
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 4.5e-38 161.4 121 67.8
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 1.7e-37 159.5 100 75.0
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 6.5e-37 157.5 121 63.6
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 2.5e-36 155.6 121 62.0
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 6.1e-35 151.0 95 76.8
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 1.0e-34 150.2 121 65.3
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 1.8e-34 149.4 121 57.9
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 6.3e-32 141.0 83 78.3
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 4.5e-30 134.8 122 59.0
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 5.9e-30 134.4 82 86.6
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 2.5e-28 129.0 68 92.6
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 2.1e-27 125.9 90 68.9
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 3.6e-27 125.2 100 68.0
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 3.6e-27 125.2 123 57.7
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 8.0e-27 124.0 122 51.6
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 1.1e-25 120.2 115 54.8
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 1.3e-24 116.7 83 69.9
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.1e-23 113.6 62 88.7
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.4e-23 113.2 121 55.4
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.3e-21 106.7 93 55.9
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 3.8e-21 105.1 60 83.3
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 9.4e-20 100.5 88 59.1
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 5.2e-18 94.7 85 60.0
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 2.8e-16 89.0 104 54.8
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 1.4e-15 86.7 61 67.2
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 7.0e-15 84.3 43 97.7
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 2.6e-09 65.9 112 34.8
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 8.3e-08 60.8 39 69.2
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.4e-07 60.1 111 34.2
CBR_g37451 Chara braunii HOM05D004883 ORTHO05D005766 7.7e-06 54.3 54 57.4


User provided reference genes

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