Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 1.0e-218 763.1 377 100.0
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 1.0e-218 763.1 377 100.0
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 1.0e-213 746.5 377 98.4
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 6.3e-200 700.7 377 92.8
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 7.7e-198 693.7 377 92.0
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 1.2e-161 573.5 365 81.6
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 4.5e-89 332.4 454 46.5
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 2.2e-80 303.5 429 46.9
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.1e-79 301.2 403 45.4
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 3.6e-78 296.2 400 46.0
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 4.6e-78 295.8 416 46.2
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.3e-75 287.7 435 43.4
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 1.5e-60 237.7 415 39.5
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 2.5e-55 220.3 417 37.2
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 7.2e-55 218.8 387 37.5
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 4.0e-53 213.0 401 34.4
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 9.8e-52 208.4 392 36.7
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.4e-50 204.5 435 33.8
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 4.1e-50 203.0 468 33.5
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 7.0e-50 202.2 362 37.0
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 2.0e-49 200.7 369 37.7
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 3.5e-49 199.9 353 36.3
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 5.9e-49 199.1 353 36.0
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 1.9e-31 141.0 151 47.7
BolC3t13228H Brassica oleracea HOM05D009880 ORTHO05D004072 9.5e-31 138.7 337 31.5
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 1.2e-30 138.3 157 46.5
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 5.2e-29 132.9 148 43.2
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 6.8e-29 132.5 161 41.6
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 4.4e-28 129.8 223 38.6
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 8.3e-27 125.6 144 43.8
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 8.3e-27 125.6 148 41.9
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 1.9e-26 124.4 137 43.8
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 7.0e-26 122.5 141 45.4
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 9.2e-26 122.1 142 43.0
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 9.2e-26 122.1 142 43.7
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 9.2e-26 122.1 142 43.0
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 1.6e-25 121.3 141 41.8
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.7e-24 117.9 143 43.4
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 2.3e-24 117.5 140 41.4
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 3.9e-24 116.7 134 44.8
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 8.6e-24 115.5 215 33.5
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 2.5e-23 114.0 208 34.1
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 7.3e-23 112.5 93 57.0
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 2.8e-22 110.5 159 37.1
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 6.2e-22 109.4 141 41.8
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 8.1e-22 109.0 153 39.9
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 1.1e-21 108.6 196 37.2
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 1.8e-21 107.8 142 39.4
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 2.3e-21 107.5 153 39.9
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 5.2e-21 106.3 145 38.6
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 5.2e-21 106.3 341 27.0
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 1.2e-20 105.1 141 41.1
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 2.0e-20 104.4 191 34.0
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 2.6e-20 104.0 145 37.9
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 7.5e-20 102.4 195 34.9
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 1.3e-19 101.7 146 37.7
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 1.3e-19 101.7 121 43.0
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 1.7e-19 101.3 141 37.6
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 2.2e-19 100.9 144 37.5
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 6.4e-19 99.4 203 31.5
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 8.3e-19 99.0 162 35.8
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 1.1e-18 98.6 144 38.2
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 4.1e-18 96.7 173 31.2
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 4.1e-18 96.7 172 36.0
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 5.4e-18 96.3 146 37.7
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 7.1e-18 95.9 160 33.8
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 7.1e-18 95.9 155 36.8
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 2.1e-17 94.4 130 42.3
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 2.1e-17 94.4 150 34.0
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 2.7e-17 94.0 145 35.9
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 3.5e-17 93.6 118 41.5
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 3.5e-17 93.6 150 36.0
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 6.0e-17 92.8 153 34.6
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 7.8e-17 92.4 166 30.7
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 1.0e-16 92.0 121 38.8
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 1.7e-16 91.3 145 35.9
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 1.7e-16 91.3 111 45.9
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 1.7e-16 91.3 111 45.9
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 1.7e-16 91.3 121 41.3
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 2.3e-16 90.9 121 40.5
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 3.0e-16 90.5 115 42.6
arahy.Tifrunner.gnm1.ann1.H02ZFL Arachis hypogaea HOM05D007742 ORTHO05D004072 5.1e-16 89.7 163 33.7
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 6.6e-16 89.4 151 33.8
DCAR_008617 Daucus carota HOM05D007742 ORTHO05D004072 6.6e-16 89.4 145 34.5
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 6.6e-16 89.4 142 33.1
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 6.6e-16 89.4 142 35.9
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 8.6e-16 89.0 140 35.7
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 8.6e-16 89.0 105 41.0
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 1.1e-15 88.6 118 39.8
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 1.1e-15 88.6 118 39.8
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.1e-15 88.6 133 35.3
arahy.Tifrunner.gnm1.ann1.L07F2C Arachis hypogaea HOM05D007742 ORTHO05D004072 1.5e-15 88.2 163 33.1
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 2.5e-15 87.4 129 37.2
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 2.5e-15 87.4 198 31.3
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 3.3e-15 87.0 142 35.2
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 3.3e-15 87.0 129 37.2
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 5.6e-15 86.3 132 37.9
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 5.6e-15 86.3 140 35.7
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 7.3e-15 85.9 118 39.0
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 7.3e-15 85.9 118 39.0
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 1.6e-14 84.7 140 36.4
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 1.6e-14 84.7 141 32.6
AUR62037803 Chenopodium quinoa HOM05D007742 ORTHO05D004072 2.1e-14 84.3 145 35.2
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 6.2e-14 82.8 117 36.8
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 1.1e-13 82.0 117 41.0
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 1.1e-13 82.0 110 38.2
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 1.8e-13 81.3 134 35.8
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 2.3e-13 80.9 150 34.0
Glyma.19G105400 Glycine max HOM05D007742 ORTHO05D004072 3.1e-13 80.5 155 32.3
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 4.0e-13 80.1 126 34.9
TPR.G26439 Trifolium pratense HOM05D007742 ORTHO05D004072 4.0e-13 80.1 200 32.0
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 5.2e-13 79.7 142 32.4
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 8.9e-13 79.0 159 34.0
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 1.2e-12 78.6 105 37.1
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 1.2e-12 78.6 153 34.0
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 1.5e-12 78.2 196 30.1
COL.COLO4_13391 Corchorus olitorius HOM05D018961 ORTHO05D004072 4.4e-12 76.6 155 32.9
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 4.4e-12 76.6 91 41.8
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 5.8e-12 76.3 138 33.3
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 1.3e-11 75.1 119 35.3
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 4.9e-11 73.2 87 43.7
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.9e-11 73.2 121 34.7
Sabra09G0085900 Salix brachista HOM05D007742 ORTHO05D004072 1.1e-10 72.0 66 47.0
CSS0000950 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 4.1e-10 70.1 134 34.3
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 1.2e-09 68.6 168 30.4
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 1.6e-09 68.2 179 27.9
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 3.5e-09 67.0 51 54.9
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 1.0e-08 65.5 179 28.5
vmacro18395 Vaccinium macrocarpon HOM05D007742 ORTHO05D004072 1.3e-08 65.1 62 48.4
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 1.7e-08 64.7 83 37.3
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 3.0e-08 63.9 100 34.0
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 3.9e-08 63.5 82 37.8
Dinv12439 Davidia involucrata HOM05D007742 ORTHO05D004072 5.1e-08 63.2 66 47.0
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 4.3e-07 60.1 60 41.7
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 5.6e-07 59.7 82 37.8
GSVIVG01032966001 Vitis vinifera HOM05D007742 ORTHO05D004072 5.6e-07 59.7 46 58.7
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 1.2e-06 58.5 45 53.3
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.6e-06 58.2 82 37.8
CANSAT64G0751 Cannabis sativa HOM05D007742 ORTHO05D004072 4.7e-06 56.6 109 31.2
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 4.7e-06 56.6 73 31.5
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 6.2e-06 56.2 179 22.3
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 8.1e-06 55.8 60 46.7
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 8.1e-06 55.8 60 46.7


User provided reference genes

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