Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p21580 Brassica napus HOM05D003467 ORTHO05D004220 1.6e-138 496.1 250 100.0
BNapus_Darmor_BZH_scaffold_234p00200 Brassica napus HOM05D003467 ORTHO05D004220 6.8e-134 480.7 250 97.2
BolSC28t60347H Brassica oleracea HOM05D003467 ORTHO05D004220 6.8e-134 480.7 250 97.2
BraSC48t46273Z Brassica rapa HOM05D003467 ORTHO05D004220 6.8e-134 480.7 250 97.2
Sp3g25530 Schrenkiella parvula HOM05D003467 ORTHO05D004220 8.8e-134 480.3 250 96.8
CARHR282930 Cardamine hirsuta HOM05D003467 ORTHO05D004220 1.9e-128 462.6 250 94.4
AL3G44370 Arabidopsis lyrata HOM05D003467 ORTHO05D004220 1.4e-126 456.4 250 93.6
Thhalv10013769m.g Eutrema salsugineum HOM05D003467 ORTHO05D004220 2.0e-125 452.6 250 93.2
AT2G07715 Arabidopsis thaliana HOM05D003467 ORTHO05D004220 9.8e-125 450.3 250 92.8
BraSC77t46654Z Brassica rapa HOM05D003467 ORTHO05D004220 1.4e-118 429.9 231 94.8
BolC9t55063H Brassica oleracea HOM05D003467 ORTHO05D004220 8.6e-89 330.9 198 91.9
BcaC08g43711 Brassica carinata HOM05D003467 ORTHO05D004220 1.7e-81 306.6 162 96.3
ATMG00560 Arabidopsis thaliana HOM05D003467 ORTHO05D004220 4.9e-76 288.5 162 92.0
Sopen05g012590 Solanum pennellii HOM05D003467 ORTHO05D004220 1.1e-72 277.3 237 66.2
Nitab4.5_0009709g0060 Nicotiana tabacum HOM05D003467 ORTHO05D004220 3.3e-72 275.8 260 60.0
Aa31csc239G20 Aethionema arabicum HOM05D003467 ORTHO05D004220 1.3e-68 263.8 162 87.0
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 2.9e-68 262.7 237 62.4
Sed0025530 Sechium edule HOM05D003467 ORTHO05D004220 8.4e-68 261.2 237 62.0
Nitab4.5_0001796g0090 Nicotiana tabacum HOM05D003467 ORTHO05D004220 9.3e-67 257.7 246 60.2
Dinv06674 Davidia involucrata HOM05D003467 ORTHO05D004220 2.0e-61 240.0 237 57.8
Lj2C1229G12 Lonicera japonica HOM05D003467 ORTHO05D004220 6.7e-57 224.9 162 73.5
Nitab4.5_0002635g0050 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.3e-55 220.7 241 57.3
ClCG11G007180 Citrullus lanatus HOM05D003467 ORTHO05D004220 8.2e-55 218.0 162 71.6
Actinidia34926 Actinidia chinensis HOM05D003467 ORTHO05D004220 6.9e-54 214.9 162 71.6
Nn1g10002 Nelumbo nucifera HOM05D003467 ORTHO05D004220 6.9e-54 214.9 162 71.0
CANSAT16G0031 Cannabis sativa HOM05D003467 ORTHO05D004220 1.2e-53 214.2 162 72.2
Solyc00g500228.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 3.8e-52 209.1 160 71.2
CsaV3_UNG208190 Cucumis sativus L. HOM05D003467 ORTHO05D004220 1.1e-51 207.6 162 67.3
SabraMtG0006300 Salix brachista HOM05D003467 ORTHO05D004220 1.1e-51 207.6 160 70.6
BolC4t23495H Brassica oleracea HOM05D003467 ORTHO05D004220 2.1e-50 203.4 110 94.5
Peaxi162Scf00197g00034 Petunia axillaris HOM05D003467 ORTHO05D004220 7.9e-50 201.4 161 68.9
Rhsim07G0055600 Rhododendron simsii HOM05D003467 ORTHO05D004220 1.0e-49 201.1 157 68.2
Sopen06g007650 Solanum pennellii HOM05D003467 ORTHO05D004220 1.1e-48 197.6 160 68.1
CAN.G1.25 Capsicum annuum HOM05D003467 ORTHO05D004220 1.3e-47 194.1 160 64.4
Nitab4.5_0004471g0080 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.8e-46 190.3 160 65.0
MBI05_g05352_MAGBIO Magnolia biondii HOM05D003467 ORTHO05D004220 6.9e-46 188.3 201 55.7
Oeu039080.1 Olea europaea HOM05D003467 ORTHO05D004220 6.9e-46 188.3 132 74.2
Solyc00g500103.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 1.2e-45 187.6 129 74.4
CAN.G502.14 Capsicum annuum HOM05D003467 ORTHO05D004220 3.4e-45 186.0 160 63.8
CAN.G134.20 Capsicum annuum HOM05D003467 ORTHO05D004220 1.0e-44 184.5 224 51.3
SGA_v2.0_scaffold255G45505 Striga asiatica HOM05D003467 ORTHO05D004220 3.8e-44 182.6 155 65.8
MBI16_g09480_MAGBIO Magnolia biondii HOM05D003467 ORTHO05D004220 3.2e-43 179.5 201 55.2
SHI36967 Sapria himalayana HOM05D003467 ORTHO05D004220 4.2e-43 179.1 162 64.2
Nitab4.5_0001152g0330 Nicotiana tabacum HOM05D003467 ORTHO05D004220 9.4e-43 177.9 160 63.1
SHI43968 Sapria himalayana HOM05D003467 ORTHO05D004220 2.1e-42 176.8 162 64.2
SHI46915 Sapria himalayana HOM05D003467 ORTHO05D004220 2.7e-42 176.4 175 60.6
BcaC05g26882 Brassica carinata HOM05D003467 ORTHO05D004220 4.6e-42 175.6 140 70.0
Nitab4.5_0012067g0060 Nicotiana tabacum HOM05D003467 ORTHO05D004220 6.9e-38 161.8 162 59.3
SHI36996 Sapria himalayana HOM05D003467 ORTHO05D004220 1.2e-37 161.0 162 61.1
Ciclev10005397m.g Citrus clementina HOM05D003467 ORTHO05D004220 2.2e-36 156.8 179 54.7
SHI36699 Sapria himalayana HOM05D003467 ORTHO05D004220 1.1e-35 154.5 158 60.8
SHI52008 Sapria himalayana HOM05D003467 ORTHO05D004220 1.4e-35 154.1 144 63.9
Nitab4.5_0006602g0040 Nicotiana tabacum HOM05D003467 ORTHO05D004220 4.2e-35 152.5 127 65.4
Peaxi162Scf00507g00009 Petunia axillaris HOM05D003467 ORTHO05D004220 5.5e-35 152.1 158 58.9
SHI52904 Sapria himalayana HOM05D003467 ORTHO05D004220 1.2e-34 151.0 143 62.9
SHI51351 Sapria himalayana HOM05D003467 ORTHO05D004220 6.1e-34 148.7 115 70.4
SHI52601 Sapria himalayana HOM05D003467 ORTHO05D004220 6.1e-34 148.7 115 70.4
SHI38192 Sapria himalayana HOM05D003467 ORTHO05D004220 7.9e-34 148.3 115 70.4
unitig_87.g27965 Utricularia gibba HOM05D003467 ORTHO05D004220 1.4e-33 147.5 159 57.9
CDE02G2877 Ceratophyllum demersum HOM05D003467 ORTHO05D004220 2.6e-32 143.3 161 53.4
SHI37209 Sapria himalayana HOM05D003467 ORTHO05D004220 3.3e-32 142.9 112 67.9
SHI40343 Sapria himalayana HOM05D003467 ORTHO05D004220 4.8e-31 139.0 150 57.3
SHI42055 Sapria himalayana HOM05D003467 ORTHO05D004220 4.8e-31 139.0 150 57.3
SHI52974 Sapria himalayana HOM05D003467 ORTHO05D004220 4.8e-31 139.0 150 57.3
SHI53305 Sapria himalayana HOM05D003467 ORTHO05D004220 4.8e-31 139.0 112 68.8
SHI37961 Sapria himalayana HOM05D003467 ORTHO05D004220 1.4e-30 137.5 148 57.4
SHI37886 Sapria himalayana HOM05D003467 ORTHO05D004220 1.8e-30 137.1 93 76.3
SHI53641 Sapria himalayana HOM05D003467 ORTHO05D004220 1.8e-30 137.1 107 68.2
SHI48358 Sapria himalayana HOM05D003467 ORTHO05D004220 3.5e-29 132.9 112 67.0
SHI37866 Sapria himalayana HOM05D003467 ORTHO05D004220 4.5e-29 132.5 114 65.8
SGA_v2.0_scaffold507G52535 Striga asiatica HOM05D003467 ORTHO05D004220 4.5e-29 132.5 101 71.3
SHI37556 Sapria himalayana HOM05D003467 ORTHO05D004220 5.9e-29 132.1 132 59.1
Manes.02G141800 Manihot esculenta HOM05D003467 ORTHO05D004220 7.7e-29 131.7 129 54.3
SHI50250 Sapria himalayana HOM05D003467 ORTHO05D004220 4.7e-26 122.5 131 58.8
Aqoxy4G00639 Aquilegia oxysepala HOM05D003467 ORTHO05D004220 3.3e-24 116.3 97 61.9
BcaC05g26874 Brassica carinata HOM05D003467 ORTHO05D004220 4.4e-24 115.9 108 63.9
SHI42501 Sapria himalayana HOM05D003467 ORTHO05D004220 9.7e-24 114.8 162 51.2
CARHR288290 Cardamine hirsuta HOM05D003467 ORTHO05D004220 2.2e-23 113.6 80 78.8
SHI38898 Sapria himalayana HOM05D003467 ORTHO05D004220 2.2e-23 113.6 89 67.4
Atru.chr10.2291 Acer truncatum HOM05D003467 ORTHO05D004220 2.4e-22 110.2 141 54.6
SHI52927 Sapria himalayana HOM05D003467 ORTHO05D004220 3.1e-22 109.8 144 52.8
SHI44578 Sapria himalayana HOM05D003467 ORTHO05D004220 5.3e-22 109.0 95 62.1
Manes.01G181900 Manihot esculenta HOM05D003467 ORTHO05D004220 1.2e-21 107.8 110 53.6
SalBow7G2519 Salvia bowleyana HOM05D003467 ORTHO05D004220 1.2e-21 107.8 122 54.1
SalBow7G4829 Salvia bowleyana HOM05D003467 ORTHO05D004220 1.2e-21 107.8 122 54.1
CDE02G4335 Ceratophyllum demersum HOM05D003467 ORTHO05D004220 3.5e-21 106.3 72 72.2
SHI38986 Sapria himalayana HOM05D003467 ORTHO05D004220 3.5e-21 106.3 95 64.2
SHI38317 Sapria himalayana HOM05D003467 ORTHO05D004220 1.3e-20 104.4 162 47.5
SHI51177 Sapria himalayana HOM05D003467 ORTHO05D004220 1.7e-20 104.0 148 48.0
SalBow1G2953 Salvia bowleyana HOM05D003467 ORTHO05D004220 6.5e-20 102.1 121 52.1
Sc16g0002730 Simmondsia chinensis HOM05D003467 ORTHO05D004220 1.5e-19 100.9 107 49.5
SalBow1G5399 Salvia bowleyana HOM05D003467 ORTHO05D004220 5.5e-19 99.0 121 51.2
SHI54334 Sapria himalayana HOM05D003467 ORTHO05D004220 2.1e-18 97.1 103 58.3
SalBow1G6425 Salvia bowleyana HOM05D003467 ORTHO05D004220 3.6e-18 96.3 121 49.6
CAN.G676.26 Capsicum annuum HOM05D003467 ORTHO05D004220 8.0e-18 95.1 94 59.6
HanXRQChr14g0459301 Helianthus annuus HOM05D003467 ORTHO05D004220 8.0e-18 95.1 121 44.6
SHI37826 Sapria himalayana HOM05D003467 ORTHO05D004220 1.0e-17 94.7 77 66.2
Migut.N03022 Erythranthe guttata HOM05D003467 ORTHO05D004220 3.0e-17 93.2 130 48.5
Nitab4.5_0020169g0010 Nicotiana tabacum HOM05D012309 ORTHO05D014791 4.0e-17 92.8 48 87.5
Lsat_1_v5_gn_5_114100 Lactuca sativa HOM05D003467 ORTHO05D004220 1.5e-16 90.9 111 45.0
SHI34612 Sapria himalayana HOM05D003467 ORTHO05D004220 1.5e-16 90.9 80 63.8
Lsat_1_v5_gn_6_32340 Lactuca sativa HOM05D003467 ORTHO05D004220 2.6e-16 90.1 115 41.7
Sed0002506 Sechium edule HOM05D003467 ORTHO05D004220 2.6e-16 90.1 133 43.6
CsaV3_UNG208180 Cucumis sativus L. HOM05D012309 ORTHO05D020467 3.4e-16 89.7 47 87.2
Nitab4.5_0001152g0380 Nicotiana tabacum HOM05D012309 ORTHO05D011202 1.3e-15 87.8 52 78.8
Hund13975 Selenicereus undatus HOM05D003467 ORTHO05D004220 1.7e-15 87.4 126 42.9
Lsat_1_v5_gn_1_109980 Lactuca sativa HOM05D003467 ORTHO05D004220 7.0e-14 82.0 115 39.1
EL10Ac6g15561 Beta vulgaris HOM05D003467 ORTHO05D004220 2.7e-13 80.1 112 42.0
Lsat_1_v5_gn_2_118881 Lactuca sativa HOM05D003467 ORTHO05D004220 1.0e-12 78.2 106 39.6
Nitab4.5_0008578g0020 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.3e-12 77.8 66 66.7
Lsat_1_v5_gn_8_11861 Lactuca sativa HOM05D003467 ORTHO05D004220 1.7e-12 77.4 110 39.1
AUR62004052 Chenopodium quinoa HOM05D003467 ORTHO05D004220 2.3e-12 77.0 116 39.7
AUR62007567 Chenopodium quinoa HOM05D003467 ORTHO05D004220 6.5e-12 75.5 117 38.5
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.1e-11 74.7 94 42.6
Nitab4.5_0009703g0010 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.5e-11 74.3 56 71.4
Nitab4.5_0000978g0040 Nicotiana tabacum HOM05D003467 ORTHO05D004220 4.2e-11 72.8 53 67.9
COL.COLO4_18957 Corchorus olitorius HOM05D003467 ORTHO05D004220 7.2e-11 72.0 141 39.7
ATR0660G010 Amborella trichopoda HOM05D003467 ORTHO05D004220 1.6e-10 70.9 46 73.9
Phvul.008G005400 Phaseolus vulgaris HOM05D003467 ORTHO05D004220 1.6e-10 70.9 91 50.5
SHI38047 Sapria himalayana HOM05D003467 ORTHO05D004220 1.4e-09 67.8 162 40.1
CAN.G1447.9 Capsicum annuum HOM05D003467 ORTHO05D004220 1.8e-09 67.4 60 63.3
SHI52074 Sapria himalayana HOM05D003467 ORTHO05D004220 3.0e-09 66.6 82 54.9
SHI37879 Sapria himalayana HOM05D003467 ORTHO05D004220 4.0e-09 66.2 162 39.5
VMungo1383G2739 Vigna mungo HOM05D003467 ORTHO05D004220 5.2e-09 65.9 91 47.3
SGA_v2.0_scaffold48G17845 Striga asiatica HOM05D003467 ORTHO05D004220 1.5e-08 64.3 62 59.7
Zm00001eb180350 Zea mays HOM05D000540 ORTHO05D000681 1.5e-08 64.3 190 28.9
Glyma.08G365200 Glycine max HOM05D003467 ORTHO05D004220 5.7e-08 62.4 90 44.4
ATR0661G353 Amborella trichopoda HOM05D003467 ORTHO05D004220 1.7e-07 60.8 109 42.2
ECA238G4840 Erigeron canadensis HOM05D000460 ORTHO05D000333 1.7e-07 60.8 93 35.5
Glyma.07G149151 Glycine max HOM05D003467 ORTHO05D004220 4.9e-07 59.3 90 43.3
MELO3C020548.2 Cucumis melo HOM05D003467 ORTHO05D004220 6.3e-07 58.9 39 71.8
Lsat_1_v5_gn_7_88480 Lactuca sativa HOM05D003467 ORTHO05D004220 6.3e-07 58.9 86 38.4
Lsat_1_v5_gn_9_26841 Lactuca sativa HOM05D003467 ORTHO05D004220 6.3e-07 58.9 77 40.3


User provided reference genes

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