Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p19830 Brassica napus HOM05D001620 ORTHO05D003132 3.6e-62 241.5 130 100.0
BolC9t54888H Brassica oleracea HOM05D001620 ORTHO05D003132 3.6e-62 241.5 130 100.0
Sp2g02250 Schrenkiella parvula HOM05D001620 ORTHO05D003132 2.0e-20 102.8 75 69.3
BcaB02g06699 Brassica carinata HOM05D001620 ORTHO05D003132 8.4e-19 97.4 75 66.7
BraA06t23711Z Brassica rapa HOM05D001620 ORTHO05D003132 8.4e-19 97.4 75 66.7
A06p05050 Brassica napus HOM05D001620 ORTHO05D003132 1.9e-18 96.3 75 65.3
AL2G13550 Arabidopsis lyrata HOM05D001620 ORTHO05D003132 7.1e-18 94.4 75 64.0
Carub.0002s0263 Capsella rubella HOM05D001620 ORTHO05D003132 9.2e-18 94.0 75 64.0
CARHR049570 Cardamine hirsuta HOM05D001620 ORTHO05D003132 9.2e-18 94.0 75 62.7
Thhalv10023910m.g Eutrema salsugineum HOM05D001620 ORTHO05D003132 9.2e-18 94.0 75 66.7
BcaC05g24711 Brassica carinata HOM05D001620 ORTHO05D003132 1.6e-17 93.2 75 64.0
C05p05990 Brassica napus HOM05D001620 ORTHO05D003132 1.6e-17 93.2 75 64.0
BolC5t29360H Brassica oleracea HOM05D001620 ORTHO05D003132 1.6e-17 93.2 75 64.0
THA.LOC104799129 Tarenaya hassleriana HOM05D001620 ORTHO05D003132 4.6e-17 91.7 75 60.0
AT1G62350 Arabidopsis thaliana HOM05D001620 ORTHO05D003132 7.8e-17 90.9 75 62.7
RcHm_v2.0_Chr5g0052331 Rosa chinensis HOM05D001620 ORTHO05D003132 5.1e-16 88.2 75 57.3
PGR102G2136 Punica granatum HOM05D001620 ORTHO05D003132 1.1e-15 87.0 75 57.3
Lalb_Chr10g0096181 Lupinus albus HOM05D001620 ORTHO05D003132 1.5e-15 86.7 75 57.3
MBI15_g18583_MAGBIO Magnolia biondii HOM05D001620 ORTHO05D003132 1.5e-15 86.7 75 58.7
Atru.chr3.2949 Acer truncatum HOM05D001620 ORTHO05D003132 2.5e-15 85.9 75 57.3
Atru.chr3.2960 Acer truncatum HOM05D001620 ORTHO05D003132 2.5e-15 85.9 75 57.3
MSTRG.11478 Avicennia marina HOM05D001620 ORTHO05D003132 2.5e-15 85.9 75 57.3
Cfa009879 Carpinus fangiana HOM05D001620 ORTHO05D003132 2.5e-15 85.9 75 56.0
AUR62006547 Chenopodium quinoa HOM05D001620 ORTHO05D003132 2.5e-15 85.9 75 56.0
CiPaw.13G149900 Carya illinoinensis HOM05D001620 ORTHO05D003132 3.3e-15 85.5 75 54.7
Glyma.07G164700 Glycine max HOM05D001620 ORTHO05D003132 3.3e-15 85.5 75 56.0
Glyma.18G047500 Glycine max HOM05D001620 ORTHO05D003132 3.3e-15 85.5 75 56.0
Gohir.D13G222300 Gossypium hirsutum HOM05D001620 ORTHO05D003132 3.3e-15 85.5 75 58.7
Gorai.013G253400 Gossypium raimondii HOM05D001620 ORTHO05D003132 3.3e-15 85.5 75 58.7
Prupe.4G265100 Prunus persica HOM05D001620 ORTHO05D003132 3.3e-15 85.5 75 54.7
COL.COLO4_29868 Corchorus olitorius HOM05D001620 ORTHO05D003132 4.3e-15 85.1 75 58.7
Duzib168G0729 Durio zibethinus HOM05D001620 ORTHO05D003132 4.3e-15 85.1 75 58.7
TAR633G0723 Trochodendron aralioides HOM05D001620 ORTHO05D003132 4.3e-15 85.1 80 55.0
Gohir.A13G218600 Gossypium hirsutum HOM05D001620 ORTHO05D003132 5.6e-15 84.7 75 57.3
Hund11612 Selenicereus undatus HOM05D001620 ORTHO05D003132 5.6e-15 84.7 75 57.3
Hund21976 Selenicereus undatus HOM05D001620 ORTHO05D003132 5.6e-15 84.7 75 57.3
Sc06g0004700 Simmondsia chinensis HOM05D001620 ORTHO05D003132 5.6e-15 84.7 75 57.3
AUR62000199 Chenopodium quinoa HOM05D001620 ORTHO05D003132 7.3e-15 84.3 75 54.7
Ca_17989_v3 Cicer arietinum L. HOM05D001620 ORTHO05D003132 7.3e-15 84.3 75 52.0
Haze_23244 Corylus avellana HOM05D001620 ORTHO05D003132 7.3e-15 84.3 75 56.0
Lj2g0012959 Lotus japonicus HOM05D001620 ORTHO05D003132 7.3e-15 84.3 75 53.3
MD11G1184600 Malus domestica HOM05D001620 ORTHO05D003132 7.3e-15 84.3 75 54.7
TWI75G1254 Tripterygium wilfordii HOM05D001620 ORTHO05D003132 7.3e-15 84.3 75 54.7
Actinidia24457 Actinidia chinensis HOM05D001620 ORTHO05D003132 9.6e-15 84.0 75 57.3
Nitab4.5_0007459g0010 Nicotiana tabacum HOM05D001620 ORTHO05D003132 9.6e-15 84.0 75 56.0
Phvul.003G032700 Phaseolus vulgaris HOM05D001620 ORTHO05D003132 9.6e-15 84.0 75 54.7
Solyc08g061590.4 Solanum lycopersicum HOM05D001620 ORTHO05D003132 9.6e-15 84.0 75 56.0
Sopen08g017040 Solanum pennellii HOM05D001620 ORTHO05D003132 9.6e-15 84.0 75 56.0
SGA_v2.0_scaffold310G48202 Striga asiatica HOM05D001620 ORTHO05D003132 9.6e-15 84.0 76 56.6
Ah.06g194630 Amaranthus hybridus HOM05D001620 ORTHO05D003132 1.3e-14 83.6 75 57.3
Eucgr.B03737 Eucalyptus grandis HOM05D001620 ORTHO05D003132 1.3e-14 83.6 75 54.7
QL01p017010 Quercus lobata HOM05D001620 ORTHO05D003132 1.3e-14 83.6 75 54.7
Rhsim13G0208800 Rhododendron simsii HOM05D001620 ORTHO05D003132 1.3e-14 83.6 75 56.0
TWI38G2083 Tripterygium wilfordii HOM05D001620 ORTHO05D003132 1.3e-14 83.6 75 54.7
vmacro04039 Vaccinium macrocarpon HOM05D001620 ORTHO05D003132 1.3e-14 83.6 75 56.0
GSVIVG01037289001 Vitis vinifera HOM05D001620 ORTHO05D003132 1.3e-14 83.6 75 57.3
CSS0032693 Camellia sinensis var. sinensis HOM05D001620 ORTHO05D003132 1.6e-14 83.2 75 54.7
FAN21G2221 Fragaria x ananassa HOM05D001620 ORTHO05D003132 1.6e-14 83.2 75 53.3
Nn1g08939 Nelumbo nucifera HOM05D001620 ORTHO05D003132 1.6e-14 83.2 75 53.3
AUR62000196 Chenopodium quinoa HOM05D001620 ORTHO05D003132 2.1e-14 82.8 75 54.7
Peaxi162Scf00486g00097 Petunia axillaris HOM05D001620 ORTHO05D003132 2.1e-14 82.8 75 56.0
Medtr1g031110 Medicago truncatula HOM05D001620 ORTHO05D003132 2.8e-14 82.4 75 52.0
Medtr3g079890 Medicago truncatula HOM05D001620 ORTHO05D003132 2.8e-14 82.4 75 52.0
PGSC0003DMG401018810 Solanum tuberosum HOM05D001620 ORTHO05D003132 2.8e-14 82.4 75 56.0
VMungo0171G0001 Vigna mungo HOM05D001620 ORTHO05D003132 2.8e-14 82.4 75 54.7
Migut.N02375 Erythranthe guttata HOM05D001620 ORTHO05D003132 3.6e-14 82.0 74 56.8
FAN16G2458 Fragaria x ananassa HOM05D001620 ORTHO05D003132 3.6e-14 82.0 75 53.3
FAN25G3321 Fragaria x ananassa HOM05D001620 ORTHO05D003132 3.6e-14 82.0 75 53.3
Thecc.09G247800 Theobroma cacao HOM05D001620 ORTHO05D003132 3.6e-14 82.0 75 57.3
ClCG03G012540 Citrullus lanatus HOM05D001620 ORTHO05D003132 4.8e-14 81.6 75 53.3
FvH4_3g28730 Fragaria vesca HOM05D001620 ORTHO05D003132 4.8e-14 81.6 75 53.3
FAN11G0333 Fragaria x ananassa HOM05D001620 ORTHO05D003132 4.8e-14 81.6 75 53.3
Lj3C1022T9 Lonicera japonica HOM05D001620 ORTHO05D003132 4.8e-14 81.6 75 53.3
ATR0705G003 Amborella trichopoda HOM05D001620 ORTHO05D003132 6.2e-14 81.3 75 54.7
HanXRQChr06g0167661 Helianthus annuus HOM05D001620 ORTHO05D003132 6.2e-14 81.3 75 52.0
MD11G1184300 Malus domestica HOM05D001620 ORTHO05D003132 8.1e-14 80.9 75 53.3
Sed0006894 Sechium edule HOM05D001620 ORTHO05D003132 8.1e-14 80.9 75 54.7
CANSAT25G1898 Cannabis sativa HOM05D001620 ORTHO05D003132 1.1e-13 80.5 75 57.3
Dinv15033 Davidia involucrata HOM05D001620 ORTHO05D003132 1.1e-13 80.5 75 53.3
Glyma.13G341300 Glycine max HOM05D001620 ORTHO05D003132 1.1e-13 80.5 76 53.9
Nitab4.5_0000446g0140 Nicotiana tabacum HOM05D001620 ORTHO05D003132 1.1e-13 80.5 75 54.7
CAN.G674.10 Capsicum annuum HOM05D001620 ORTHO05D003132 1.4e-13 80.1 75 54.7
Cpa.g.sc69.1 Carica papaya HOM05D001620 ORTHO05D003132 1.4e-13 80.1 75 53.3
Ciclev10016520m.g Citrus clementina HOM05D001620 ORTHO05D003132 1.8e-13 79.7 75 52.0
ECA238G3542 Erigeron canadensis HOM05D001620 ORTHO05D003132 1.8e-13 79.7 75 53.3
Potri.001G275000 Populus trichocarpa HOM05D001620 ORTHO05D003132 1.8e-13 79.7 75 52.0
Sabra09G0052400 Salix brachista HOM05D001620 ORTHO05D003132 1.8e-13 79.7 75 53.3
Cc00_g25090 Coffea canephora HOM05D001620 ORTHO05D003132 2.4e-13 79.3 75 54.7
Cc02_g31900 Coffea canephora HOM05D001620 ORTHO05D003132 2.4e-13 79.3 75 54.7
arahy.Tifrunner.gnm1.ann1.0C9A28 Arachis hypogaea HOM05D001620 ORTHO05D003132 3.1e-13 79.0 75 53.3
arahy.Tifrunner.gnm1.ann1.6U9V59 Arachis hypogaea HOM05D001620 ORTHO05D003132 3.1e-13 79.0 75 53.3
Sabra16G0169300 Salix brachista HOM05D001620 ORTHO05D003132 3.1e-13 79.0 75 50.7
Sabra16G0169500 Salix brachista HOM05D001620 ORTHO05D003132 3.1e-13 79.0 75 50.7
MELO3C015110.2 Cucumis melo HOM05D001620 ORTHO05D003132 5.3e-13 78.2 75 53.3
CsaV3_1G043490 Cucumis sativus L. HOM05D001620 ORTHO05D003132 5.3e-13 78.2 75 53.3
Psat6g043200 Pisum sativum HOM05D001620 ORTHO05D003132 6.9e-13 77.8 75 52.0
Aqoxy1G01291 Aquilegia oxysepala HOM05D001620 ORTHO05D003132 9.0e-13 77.4 75 53.3
Manes.11G012200 Manihot esculenta HOM05D001620 ORTHO05D003132 1.5e-12 76.6 75 52.0
HPP92_013768 Vanilla planifolia HOM05D001620 ORTHO05D003132 1.5e-12 76.6 74 52.7
HPP92_013840 Vanilla planifolia HOM05D001620 ORTHO05D003132 1.5e-12 76.6 74 52.7
HPP92_013857 Vanilla planifolia HOM05D001620 ORTHO05D003132 1.5e-12 76.6 74 52.7
Lsat_1_v5_gn_2_31920 Lactuca sativa HOM05D001620 ORTHO05D003132 2.0e-12 76.3 73 50.7
Zm00001eb144720 Zea mays HOM05D001620 ORTHO05D003132 3.4e-12 75.5 75 52.0
EL10Ac4g10112 Beta vulgaris HOM05D001620 ORTHO05D003132 7.6e-12 74.3 75 50.7
PGSC0003DMG400018809 Solanum tuberosum HOM05D001620 ORTHO05D003132 2.2e-11 72.8 75 50.7
Os03g0297700 Oryza sativa ssp. japonica HOM05D001620 ORTHO05D003132 2.9e-11 72.4 75 50.7
TPR.G36872 Trifolium pratense HOM05D001620 ORTHO05D003132 4.9e-11 71.6 49 63.3
CDE04G3108 Ceratophyllum demersum HOM05D001620 ORTHO05D003132 1.9e-10 69.7 75 46.7
CDE04G3660 Ceratophyllum demersum HOM05D001620 ORTHO05D003132 1.9e-10 69.7 75 46.7
PSO765G0157 Papaver somniferum HOM05D001620 ORTHO05D003132 2.7e-09 65.9 70 50.0
PSO349G0137 Papaver somniferum HOM05D001620 ORTHO05D003132 3.5e-09 65.5 75 46.7
Ca_20610_v3 Cicer arietinum L. HOM05D001620 ORTHO05D003132 7.8e-09 64.3 74 41.9
Ca_29564_v3 Cicer arietinum L. HOM05D001620 ORTHO05D003132 7.8e-09 64.3 74 41.9
Medtr4g064917 Medicago truncatula HOM05D001620 ORTHO05D003132 3.9e-08 62.0 74 40.5
TPR.G23569 Trifolium pratense HOM05D001620 ORTHO05D003132 5.1e-08 61.6 74 40.5
Glyma.11G135100 Glycine max HOM05D001620 ORTHO05D003132 6.6e-08 61.2 74 40.5
Glyma.12G058700 Glycine max HOM05D001620 ORTHO05D003132 6.6e-08 61.2 74 40.5
Lj4g0021462 Lotus japonicus HOM05D001620 ORTHO05D003132 6.6e-08 61.2 74 40.5
FvH4_3g37180 Fragaria vesca HOM05D001620 ORTHO05D003132 8.7e-08 60.8 74 40.5
FAN11G2079 Fragaria x ananassa HOM05D001620 ORTHO05D003132 8.7e-08 60.8 74 40.5
Phvul.011G060800 Phaseolus vulgaris HOM05D001620 ORTHO05D003132 8.7e-08 60.8 74 41.9
Psat7g211240 Pisum sativum HOM05D001620 ORTHO05D003132 1.1e-07 60.5 73 39.7
Prupe.6G067500 Prunus persica HOM05D001620 ORTHO05D003132 1.1e-07 60.5 74 39.2
Aqoxy5G00121 Aquilegia oxysepala HOM05D001620 ORTHO05D003132 1.5e-07 60.1 74 40.5
MD11G1091300 Malus domestica HOM05D001620 ORTHO05D003132 1.5e-07 60.1 74 39.2
FAN16G1201 Fragaria x ananassa HOM05D001620 ORTHO05D003132 1.9e-07 59.7 74 39.2
FAN21G0292 Fragaria x ananassa HOM05D001620 ORTHO05D003132 1.9e-07 59.7 74 39.2
FAN25G1449 Fragaria x ananassa HOM05D001620 ORTHO05D003132 1.9e-07 59.7 74 39.2
RcHm_v2.0_Chr5g0066921 Rosa chinensis HOM05D001620 ORTHO05D003132 1.9e-07 59.7 74 39.2
SGA_v2.0_scaffold298G47714 Striga asiatica HOM05D001620 ORTHO05D003132 2.5e-07 59.3 74 41.9
VMungo1127G0017 Vigna mungo HOM05D001620 ORTHO05D003132 2.5e-07 59.3 74 40.5
Oeu013082.3 Olea europaea HOM05D001620 ORTHO05D003132 3.3e-07 58.9 74 40.5
Aqoxy1G00797 Aquilegia oxysepala HOM05D001620 ORTHO05D003132 4.3e-07 58.5 74 37.8
SEGI_13321 Sequoiadendron giganteum HOM05D001620 ORTHO05D003132 4.3e-07 58.5 75 41.3
vmacro13763 Vaccinium macrocarpon HOM05D001620 ORTHO05D003132 7.3e-07 57.8 74 39.2
AL5G25890 Arabidopsis lyrata HOM05D001620 ORTHO05D003132 9.6e-07 57.4 74 39.2
AT3G46870 Arabidopsis thaliana HOM05D001620 ORTHO05D003132 9.6e-07 57.4 74 39.2
BcaB01g00964 Brassica carinata HOM05D001620 ORTHO05D003132 9.6e-07 57.4 74 39.2
BcaC01g01878 Brassica carinata HOM05D001620 ORTHO05D003132 9.6e-07 57.4 74 39.2
A06p20680 Brassica napus HOM05D001620 ORTHO05D003132 9.6e-07 57.4 74 39.2
C03p71020 Brassica napus HOM05D001620 ORTHO05D003132 9.6e-07 57.4 74 39.2
BolC3t19384H Brassica oleracea HOM05D001620 ORTHO05D003132 9.6e-07 57.4 74 39.2
Carub.0005s1308 Capsella rubella HOM05D001620 ORTHO05D003132 9.6e-07 57.4 74 39.2
CARHR155520 Cardamine hirsuta HOM05D001620 ORTHO05D003132 9.6e-07 57.4 74 39.2
Thhalv10010650m.g Eutrema salsugineum HOM05D001620 ORTHO05D003132 9.6e-07 57.4 74 39.2
Gohir.A05G092100 Gossypium hirsutum HOM05D001620 ORTHO05D003132 9.6e-07 57.4 74 37.8
Lalb_Chr19g0138011 Lupinus albus HOM05D001620 ORTHO05D003132 9.6e-07 57.4 74 37.8
Os07g0549200 Oryza sativa ssp. japonica HOM05D001620 ORTHO05D003132 9.6e-07 57.4 74 39.2
Cpa.g.sc81.55 Carica papaya HOM05D001620 ORTHO05D003132 1.3e-06 57.0 74 37.8
Zm00001eb106590 Zea mays HOM05D001620 ORTHO05D003132 1.3e-06 57.0 74 39.2
AUR62037709 Chenopodium quinoa HOM05D001620 ORTHO05D003132 1.6e-06 56.6 56 51.8
COL.COLO4_18601 Corchorus olitorius HOM05D001620 ORTHO05D003132 1.6e-06 56.6 74 37.8
Oeu064132.1 Olea europaea HOM05D001620 ORTHO05D003132 1.6e-06 56.6 74 39.2
Sp5g14880 Schrenkiella parvula HOM05D001620 ORTHO05D003132 1.6e-06 56.6 74 39.2
Hma1.2p1_0837F.1_g226100 Hydrangea macrophylla HOM05D001620 ORTHO05D003132 2.1e-06 56.2 49 49.0
THA.LOC104810746 Tarenaya hassleriana HOM05D001620 ORTHO05D003132 2.1e-06 56.2 74 39.2
CANSAT54G0541 Cannabis sativa HOM05D001620 ORTHO05D003132 2.8e-06 55.8 74 37.8
TWI56G1405 Tripterygium wilfordii HOM05D001620 ORTHO05D003132 2.8e-06 55.8 74 39.2
Gorai.009G095500 Gossypium raimondii HOM05D001620 ORTHO05D003132 3.6e-06 55.5 73 37.0
Eucgr.B02297 Eucalyptus grandis HOM05D001620 ORTHO05D003132 6.2e-06 54.7 47 48.9
SEGI_20759 Sequoiadendron giganteum HOM05D001620 ORTHO05D003132 6.2e-06 54.7 76 39.5


User provided reference genes

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