Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 0.0e+00 1439.1 763 100.0
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 0.0e+00 1438.7 762 100.0
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 0.0e+00 1432.9 763 99.3
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 0.0e+00 1411.0 764 98.0
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 0.0e+00 1410.2 764 98.0
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 0.0e+00 1361.7 769 94.7
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 0.0e+00 1354.7 771 93.9
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 0.0e+00 1319.7 771 92.1
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 0.0e+00 1308.9 768 91.5
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 0.0e+00 1308.5 769 91.3
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 0.0e+00 1301.2 769 91.3
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 0.0e+00 1293.5 768 91.0
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 0.0e+00 1225.3 771 85.7
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1175.2 783 78.8
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 6.3e-308 1060.4 775 73.3
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 2.6e-306 1055.0 779 74.5
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 4.5e-306 1054.3 775 73.2
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 1.3e-305 1052.7 747 75.2
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 5.5e-304 1047.3 719 75.5
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 7.2e-304 1047.0 775 72.9
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 7.2e-304 1047.0 722 74.1
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 1.5e-301 1039.3 719 75.0
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 3.3e-301 1038.1 773 70.0
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 5.7e-301 1037.3 722 74.0
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 7.5e-301 1036.9 719 74.1
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.7e-300 1035.8 766 71.4
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 2.2e-300 1035.4 778 72.0
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 2.8e-300 1035.0 766 71.4
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 2.8e-300 1035.0 771 70.8
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 3.7e-300 1034.6 777 70.5
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 4.8e-300 1034.2 724 72.9
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 1.1e-299 1033.1 776 71.4
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 1.4e-299 1032.7 783 70.1
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 1.4e-299 1032.7 776 70.4
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 2.4e-299 1031.9 790 70.4
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 4.1e-299 1031.2 767 71.3
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 5.3e-299 1030.8 763 70.8
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 7.0e-299 1030.4 784 71.2
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.2e-298 1029.6 725 72.6
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.6e-298 1029.2 771 70.9
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 2.0e-298 1028.9 780 69.9
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 2.0e-298 1028.9 717 74.8
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 4.5e-298 1027.7 747 73.8
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 7.7e-298 1026.9 774 72.9
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 1.0e-297 1026.5 730 72.9
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.0e-297 1026.5 776 70.5
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 1.3e-297 1026.2 771 70.0
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 6.5e-297 1023.8 768 69.5
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 6.5e-297 1023.8 774 70.7
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 1.5e-296 1022.7 776 68.9
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 2.5e-296 1021.9 770 71.0
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 2.5e-296 1021.9 770 71.0
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 9.4e-296 1020.0 778 68.5
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 1.2e-295 1019.6 719 74.1
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.6e-295 1019.2 748 70.9
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 2.1e-295 1018.8 716 72.5
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 4.7e-295 1017.7 768 69.3
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 8.8e-294 1013.4 770 70.0
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 1.2e-293 1013.1 771 68.1
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 5.7e-293 1010.7 789 71.1
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 9.8e-293 1010.0 722 75.1
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 9.8e-293 1010.0 722 71.2
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 2.2e-292 1008.8 782 70.8
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 1.8e-291 1005.7 722 71.6
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 2.4e-291 1005.4 768 68.6
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.2e-290 1003.0 770 69.4
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 4.5e-290 1001.1 783 70.6
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 1.7e-289 999.2 761 68.5
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 1.9e-288 995.7 703 75.2
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 9.5e-288 993.4 769 68.9
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 1.2e-287 993.0 715 72.3
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 6.1e-287 990.7 770 67.0
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 1.4e-286 989.6 722 72.0
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 1.4e-286 989.6 722 72.0
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 2.0e-285 985.7 778 68.3
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 3.4e-285 984.9 744 70.3
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.8e-283 979.2 697 71.7
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 2.4e-283 978.8 772 68.1
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 2.4e-283 978.8 779 67.7
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 2.0e-282 975.7 823 65.1
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 1.7e-281 972.6 775 68.3
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 3.9e-281 971.5 720 71.1
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 5.6e-280 967.6 716 70.0
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 9.8e-277 956.8 699 71.8
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 2.0e-274 949.1 731 68.7
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 7.8e-274 947.2 725 69.4
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 9.5e-272 940.3 720 66.4
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 1.2e-271 939.9 722 69.5
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 1.2e-269 933.3 749 66.5
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 2.0e-269 932.6 778 69.0
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 1.7e-268 929.5 728 69.0
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 4.1e-267 924.9 698 69.5
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 5.4e-267 924.5 788 62.7
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 1.6e-266 922.9 665 71.7
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 5.1e-265 917.9 775 64.0
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 2.2e-260 902.5 745 65.2
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 7.4e-224 781.2 544 72.2
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 3.7e-223 778.9 714 58.3
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.4e-222 776.9 544 71.9
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 1.8e-222 776.5 636 71.5
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 6.1e-218 761.5 736 54.8
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 6.1e-218 761.5 705 57.7
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 2.5e-216 756.1 751 57.4
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 5.5e-211 738.4 752 52.1
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.0e-200 703.4 535 63.2
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 1.8e-198 696.8 529 63.9
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 1.7e-191 673.7 530 63.4
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.8e-177 627.1 519 59.7
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.7e-175 620.5 415 73.7
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 2.8e-162 576.6 398 73.1
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 8.1e-154 548.5 415 64.8
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 2.7e-141 506.9 343 74.1
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.4e-126 456.1 263 82.5
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 4.8e-90 336.7 492 41.7
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 4.1e-89 333.6 279 62.4
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.5e-88 331.6 701 33.5
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.7e-85 320.9 264 60.6
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 3.7e-82 310.5 588 39.5
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 6.8e-68 263.1 282 55.0
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 1.4e-65 255.4 626 31.2
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.9e-63 247.7 352 44.9
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 2.0e-51 208.4 116 90.5
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 9.2e-49 199.5 146 75.3
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 5.6e-38 163.7 99 75.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.2e-35 156.0 83 83.1
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 4.0e-28 131.0 154 51.9
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 5.6e-22 110.5 54 87.0
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 7.6e-19 100.1 106 55.7
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 2.7e-16 91.7 135 46.7
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 4.6e-16 90.9 102 50.0
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 1.3e-15 89.4 71 67.6
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 2.9e-10 71.6 41 78.0
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 1.9e-09 68.9 75 54.7
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 6.7e-07 60.5 79 41.8
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 2.5e-06 58.5 81 40.7


User provided reference genes

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