Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 0.0e+00 1159.1 611 100.0
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 0.0e+00 1080.5 643 91.4
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 7.0e-310 1066.6 594 96.6
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 6.8e-305 1050.0 576 97.4
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 7.1e-294 1013.4 591 89.2
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 7.9e-269 930.2 597 82.7
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 5.5e-246 854.4 608 75.5
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 9.4e-246 853.6 565 79.8
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 3.0e-244 848.6 564 79.1
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 2.8e-242 842.0 600 75.0
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 1.4e-241 839.7 572 77.8
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 1.4e-238 829.7 559 79.2
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 2.6e-195 686.0 509 72.1
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 2.1e-165 586.6 594 56.2
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 8.1e-165 584.7 561 57.2
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 1.9e-161 573.5 569 54.5
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 1.6e-160 570.5 580 53.1
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 6.7e-159 565.1 558 54.8
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 8.7e-159 564.7 574 54.4
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 1.1e-158 564.3 611 52.5
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 4.8e-157 558.9 581 53.9
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 6.2e-157 558.5 574 54.0
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 4.0e-156 555.8 576 53.6
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 4.0e-156 555.8 569 54.0
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 4.0e-156 555.8 578 53.5
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 5.3e-156 555.4 556 54.7
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 1.2e-155 554.3 576 52.6
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 1.7e-154 550.4 551 54.3
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 2.2e-154 550.1 579 53.0
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 6.4e-154 548.5 584 53.6
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.9e-151 539.3 608 50.2
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 3.9e-151 539.3 593 51.1
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 8.7e-151 538.1 578 53.1
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.1e-150 537.7 578 52.9
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 1.9e-150 537.0 578 53.1
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 1.9e-150 537.0 612 49.7
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 5.6e-150 535.4 612 49.7
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.1e-148 531.2 564 52.5
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 3.1e-148 529.6 580 52.4
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 6.9e-148 528.5 573 52.5
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 6.9e-148 528.5 558 51.6
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 6.9e-148 528.5 616 49.0
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.5e-147 527.3 555 52.4
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 1.3e-146 524.2 554 53.2
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 2.5e-145 520.0 571 52.2
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 2.5e-145 520.0 573 49.9
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 6.0e-144 515.4 575 50.8
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 7.4e-142 508.4 554 51.3
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 9.7e-142 508.1 603 50.6
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 1.6e-141 507.3 566 51.6
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 5.3e-140 502.3 568 50.5
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 6.9e-140 501.9 524 52.9
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 9.0e-140 501.5 564 48.8
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 1.2e-139 501.1 563 50.8
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 2.0e-139 500.4 576 49.0
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 1.0e-138 498.0 554 51.1
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 1.3e-138 497.7 539 49.9
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 1.3e-138 497.7 545 51.9
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 1.7e-138 497.3 563 49.6
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 2.2e-138 496.9 547 50.6
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 8.5e-138 495.0 527 51.2
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 1.4e-137 494.2 550 52.4
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 1.9e-137 493.8 566 50.2
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 4.2e-137 492.7 554 50.9
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 2.1e-136 490.3 577 49.2
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 2.1e-136 490.3 542 50.6
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 6.1e-136 488.8 598 47.5
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 1.4e-135 487.6 547 50.1
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 2.3e-135 486.9 536 50.6
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 3.0e-135 486.5 558 49.6
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 3.9e-135 486.1 522 50.6
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 1.1e-134 484.6 537 51.2
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 2.0e-134 483.8 572 48.1
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 5.7e-134 482.3 506 52.8
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 8.2e-133 478.4 513 50.3
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 1.8e-132 477.2 607 47.1
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 9.1e-132 474.9 547 49.2
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 5.0e-130 469.2 519 49.5
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 6.5e-130 468.8 467 55.7
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 8.5e-130 468.4 550 47.6
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 2.3e-127 460.3 572 47.2
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 3.9e-127 459.5 629 45.5
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 7.4e-126 455.3 603 43.9
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 9.7e-126 454.9 549 48.3
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 1.1e-124 451.4 539 47.3
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 5.9e-123 445.7 495 50.1
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 1.0e-119 434.9 537 47.3
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 1.4e-119 434.5 555 47.7
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 4.4e-118 429.5 582 47.1
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 7.4e-118 428.7 578 45.8
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 4.8e-117 426.0 422 55.0
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 3.1e-116 423.3 570 44.6
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 9.1e-116 421.8 582 45.5
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 5.9e-115 419.1 556 44.4
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 1.9e-113 414.1 407 53.6
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 6.1e-112 409.1 496 48.8
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 3.2e-105 386.7 483 44.7
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 8.0e-88 328.9 452 46.2
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 2.9e-77 293.9 553 35.1
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 9.2e-76 288.9 496 38.5
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 9.2e-76 288.9 538 37.2
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 8.3e-69 265.8 540 33.9
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 5.3e-55 219.9 318 40.3
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 1.1e-52 212.2 282 47.2
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.0e-50 204.1 196 54.1
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 2.4e-44 184.5 190 55.8
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 3.8e-37 160.6 568 26.4
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 7.9e-27 126.3 475 26.3
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 6.7e-26 123.2 352 29.5
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 1.9e-25 121.7 579 23.0
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 1.1e-20 105.9 149 42.3
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 2.1e-11 75.1 115 40.9
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 2.1e-11 75.1 115 40.9
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 2.1e-11 75.1 115 40.9
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 2.1e-11 75.1 115 40.9
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 3.9e-10 70.9 68 55.9
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 2.8e-08 64.7 116 34.5
HanXRQChr16g0525891 Helianthus annuus HOM05D004977 ORTHO05D006454 1.8e-07 62.0 291 22.0
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 2.4e-07 61.6 306 24.5
HPP92_002246 Vanilla planifolia HOM05D004977 ORTHO05D006454 4.1e-07 60.8 357 23.8
Nitab4.5_0003551g0050 Nicotiana tabacum HOM05D004977 ORTHO05D006454 1.2e-06 59.3 288 21.9
CAN.G160.14 Capsicum annuum HOM05D004977 ORTHO05D006454 2.0e-06 58.5 290 22.1
Nitab4.5_0002611g0110 Nicotiana tabacum HOM05D004977 ORTHO05D006454 2.0e-06 58.5 288 21.9
Actinidia17422 Actinidia chinensis HOM05D006562 ORTHO05D008230 4.5e-06 57.4 192 29.2
A04p20300 Brassica napus HOM05D006562 ORTHO05D008230 4.5e-06 57.4 47 59.6
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 5.9e-06 57.0 284 24.6
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 5.9e-06 57.0 66 50.0
Peaxi162Scf00401g00211 Petunia axillaris HOM05D004977 ORTHO05D006454 5.9e-06 57.0 298 22.5
Solyc07g005880.3 Solanum lycopersicum HOM05D004977 ORTHO05D006454 5.9e-06 57.0 290 22.1
Sopen07g001990 Solanum pennellii HOM05D004977 ORTHO05D006454 5.9e-06 57.0 290 22.1


User provided reference genes

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