Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p10780 Brassica napus HOM05D001716 ORTHO05D019901 2.6e-45 184.9 84 100.0
BcaB04g20038 Brassica carinata HOM05D001716 ORTHO05D019901 1.3e-44 182.6 84 98.8
BcaC04g23241 Brassica carinata HOM05D001716 ORTHO05D019901 1.2e-42 176.0 79 100.0
BraA09t36575Z Brassica rapa HOM05D001716 ORTHO05D019901 1.0e-33 146.4 69 95.7
A09p09230 Brassica napus HOM05D001716 ORTHO05D019901 2.3e-30 135.2 64 95.3
BolC9t53973H Brassica oleracea HOM05D001716 ORTHO05D019901 7.1e-19 97.1 45 95.6
Cpa.g.c26343.1 Carica papaya HOM05D001716 ORTHO05D005286 9.9e-13 76.6 39 87.2
Lj7P109T40 Lonicera japonica HOM05D001716 ORTHO05D005286 1.3e-12 76.3 38 89.5
BcaB02g09911 Brassica carinata HOM05D001716 ORTHO05D005286 3.8e-12 74.7 37 89.2
BraA06t26211Z Brassica rapa HOM05D001716 ORTHO05D005286 3.8e-12 74.7 36 94.4
Thhalv10004147m.g Eutrema salsugineum HOM05D001716 ORTHO05D005286 3.8e-12 74.7 36 94.4
Sp2g29020 Schrenkiella parvula HOM05D001716 ORTHO05D005286 3.8e-12 74.7 36 94.4
AL8G43670 Arabidopsis lyrata HOM05D001716 ORTHO05D005286 1.1e-11 73.2 36 91.7
AT5G67630 Arabidopsis thaliana HOM05D001716 ORTHO05D005286 1.1e-11 73.2 36 91.7
Carub.0008s2684 Capsella rubella HOM05D001716 ORTHO05D005286 1.1e-11 73.2 36 91.7
CARHR279960 Cardamine hirsuta HOM05D001716 ORTHO05D005286 1.1e-11 73.2 36 91.7
Atru.chr3.1032 Acer truncatum HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
Actinidia11972 Actinidia chinensis HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
Actinidia36427 Actinidia chinensis HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
ATR0824G271 Amborella trichopoda HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
MSTRG.3477 Avicennia marina HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
CANSAT01G2893 Cannabis sativa HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
CiPaw.02G001700 Carya illinoinensis HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
ClCG01G017700 Citrullus lanatus HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
COL.COLO4_11594 Corchorus olitorius HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
MELO3C007648.2 Cucumis melo HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
CsaV3_6G044230 Cucumis sativus L. HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
DCAR_025814 Daucus carota HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
Duzib187G1319 Durio zibethinus HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
Duzib264G0207 Durio zibethinus HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
ECA232G0678 Erigeron canadensis HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
Migut.H00335 Erythranthe guttata HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
Eucgr.I00692 Eucalyptus grandis HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
Gohir.A11G213500 Gossypium hirsutum HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
Gohir.D11G209700 Gossypium hirsutum HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
Gorai.007G224900 Gossypium raimondii HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
HanXRQChr12g0355061 Helianthus annuus HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
HanXRQChr15g0492541 Helianthus annuus HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
Lsat_1_v5_gn_9_41920 Lactuca sativa HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
Nn5g30630 Nelumbo nucifera HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
Oeu032428.1 Olea europaea HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
PGR004G2469 Punica granatum HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
Rhsim10G0097300 Rhododendron simsii HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
RhsimUnG0241600 Rhododendron simsii HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
THA.LOC104811581 Tarenaya hassleriana HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
Thecc.01G074300 Theobroma cacao HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
TWI39G0842 Tripterygium wilfordii HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
TWI74G0064 Tripterygium wilfordii HOM05D001716 ORTHO05D005286 1.4e-11 72.8 36 91.7
Cc07_g07250 Coffea canephora HOM05D001716 ORTHO05D005286 1.9e-11 72.4 36 88.9
MSTRG.23660 Avicennia marina HOM05D001716 ORTHO05D005286 2.4e-11 72.0 36 91.7
EL10Ac6g15607 Beta vulgaris HOM05D001716 ORTHO05D005286 2.4e-11 72.0 36 91.7
AUR62019612 Chenopodium quinoa HOM05D001716 ORTHO05D005286 2.4e-11 72.0 36 91.7
AUR62037589 Chenopodium quinoa HOM05D001716 ORTHO05D005286 2.4e-11 72.0 36 91.7
Ciclev10025549m.g Citrus clementina HOM05D001716 ORTHO05D005286 2.4e-11 72.0 36 91.7
Oeu011981.1 Olea europaea HOM05D001716 ORTHO05D005286 2.4e-11 72.0 36 91.7
Sc03g0002460 Simmondsia chinensis HOM05D001716 ORTHO05D005286 2.4e-11 72.0 36 91.7
Lj4P164T34 Lonicera japonica HOM05D001716 ORTHO05D019901 3.2e-11 71.6 37 86.5
Aqoxy3G00404 Aquilegia oxysepala HOM05D001716 ORTHO05D005286 4.1e-11 71.2 36 88.9
A06p32790 Brassica napus HOM05D001716 ORTHO05D005286 4.1e-11 71.2 35 91.4
C03p59680 Brassica napus HOM05D001716 ORTHO05D005286 4.1e-11 71.2 35 91.4
BolC3t18230H Brassica oleracea HOM05D001716 ORTHO05D005286 4.1e-11 71.2 35 91.4
Haze_15267 Corylus avellana HOM05D001716 ORTHO05D005286 4.1e-11 71.2 36 88.9
Dinv23031 Davidia involucrata HOM05D001716 ORTHO05D005286 4.1e-11 71.2 36 88.9
Hma1.2p1_1662F.1_g296260 Hydrangea macrophylla HOM05D001716 ORTHO05D005286 4.1e-11 71.2 36 88.9
PSO017G1956 Papaver somniferum HOM05D001716 ORTHO05D005286 4.1e-11 71.2 36 88.9
SGA_v2.0_scaffold34G13838 Striga asiatica HOM05D001716 ORTHO05D005286 4.1e-11 71.2 36 88.9
TAR628G0067 Trochodendron aralioides HOM05D001716 ORTHO05D005286 4.1e-11 71.2 36 88.9
arahy.Tifrunner.gnm1.ann1.PJ5Q5S Arachis hypogaea HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
arahy.Tifrunner.gnm1.ann1.TSR8I7 Arachis hypogaea HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
CSS0020198 Camellia sinensis var. sinensis HOM05D001716 ORTHO05D005286 5.4e-11 70.9 35 91.4
CSS0031097 Camellia sinensis var. sinensis HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
CAN.G354.11 Capsicum annuum HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 86.1
Ca_14882_v3 Cicer arietinum L. HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
Dinv26947 Davidia involucrata HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
Glyma.08G335300 Glycine max HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
Glyma.18G070300 Glycine max HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
Lj6g0016700 Lotus japonicus HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
Lalb_Chr15g0082591 Lupinus albus HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
Lalb_Chr18g0050591 Lupinus albus HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
Manes.12G116100 Manihot esculenta HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
Manes.13G110200 Manihot esculenta HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
Medtr3g061640 Medicago truncatula HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
Nitab4.5_0000076g0030 Nicotiana tabacum HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 86.1
Nitab4.5_0001502g0030 Nicotiana tabacum HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 86.1
Peaxi162Scf00155g00315 Petunia axillaris HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 86.1
Phvul.006G062800 Phaseolus vulgaris HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
Psat3g073800 Pisum sativum HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
Solyc03g032070.3 Solanum lycopersicum HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 86.1
Sopen03g005920 Solanum pennellii HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 86.1
PGSC0003DMG400018681 Solanum tuberosum HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 86.1
TPR.G30127 Trifolium pratense HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
TAR381G1690 Trochodendron aralioides HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
unitig_52.g17605 Utricularia gibba HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
VMungo0540G0749 Vigna mungo HOM05D001716 ORTHO05D005286 5.4e-11 70.9 36 88.9
Ah.13g075570 Amaranthus hybridus HOM05D001716 ORTHO05D005286 7.1e-11 70.5 36 88.9
Sed0022589 Sechium edule HOM05D001716 ORTHO05D005286 7.1e-11 70.5 36 88.9
Hund16410 Selenicereus undatus HOM05D001716 ORTHO05D005286 7.1e-11 70.5 36 88.9
SEGI_14920 Sequoiadendron giganteum HOM05D001716 ORTHO05D005286 9.2e-11 70.1 37 86.5
CDE01G0010 Ceratophyllum demersum HOM05D001716 ORTHO05D005286 1.6e-10 69.3 36 86.1
CDE12G0541 Ceratophyllum demersum HOM05D001716 ORTHO05D005286 1.6e-10 69.3 36 86.1
MCO12G434 Micromonas commoda HOM05D001716 ORTHO05D005286 1.6e-10 69.3 36 88.9
Psat5g162960 Pisum sativum HOM05D001716 ORTHO05D005286 1.6e-10 69.3 36 86.1
AT3G49830 Arabidopsis thaliana HOM05D001716 ORTHO05D005286 2.1e-10 68.9 37 81.1
Carub.0005s1618 Capsella rubella HOM05D001716 ORTHO05D005286 2.1e-10 68.9 37 83.8
Cre10.g442700 Chlamydomonas reinhardtii HOM05D001716 ORTHO05D005286 2.1e-10 68.9 36 88.9
Gohir.A03G065400 Gossypium hirsutum HOM05D001716 ORTHO05D005286 2.1e-10 68.9 36 88.9
Gohir.D03G091700 Gossypium hirsutum HOM05D001716 ORTHO05D005286 2.1e-10 68.9 36 88.9
Gorai.003G095100 Gossypium raimondii HOM05D001716 ORTHO05D005286 2.1e-10 68.9 36 88.9
Mapoly0059s0092 Marchantia polymorpha HOM05D001716 ORTHO05D005286 2.1e-10 68.9 36 88.9
Pp3c14_1470 Physcomitrium patens HOM05D001716 ORTHO05D005286 2.1e-10 68.9 36 88.9
SEGI_13567 Sequoiadendron giganteum HOM05D001716 ORTHO05D005286 2.1e-10 68.9 36 88.9
Zm00001eb325580 Zea mays HOM05D001716 ORTHO05D005286 2.1e-10 68.9 36 86.1
Prupe.1G544700 Prunus persica HOM05D001716 ORTHO05D005286 2.7e-10 68.6 36 86.1
HPP92_019986 Vanilla planifolia HOM05D001716 ORTHO05D005286 2.7e-10 68.6 36 83.3
Zm00001eb107710 Zea mays HOM05D001716 ORTHO05D005286 2.7e-10 68.6 36 83.3
CARHR158900 Cardamine hirsuta HOM05D001716 ORTHO05D005286 3.5e-10 68.2 37 81.1
FvH4_1g17590 Fragaria vesca HOM05D001716 ORTHO05D005286 3.5e-10 68.2 36 86.1
FAN19G0905 Fragaria x ananassa HOM05D001716 ORTHO05D005286 3.5e-10 68.2 36 86.1
FAN23G1487 Fragaria x ananassa HOM05D001716 ORTHO05D005286 3.5e-10 68.2 36 86.1
FAN26G1334 Fragaria x ananassa HOM05D001716 ORTHO05D005286 3.5e-10 68.2 36 86.1
FAN28G0338 Fragaria x ananassa HOM05D001716 ORTHO05D005286 3.5e-10 68.2 36 86.1
RcHm_v2.0_Chr2g0107901 Rosa chinensis HOM05D001716 ORTHO05D005286 3.5e-10 68.2 36 86.1
Potri.016G096800 Populus trichocarpa HOM05D001716 ORTHO05D005286 4.6e-10 67.8 36 80.6
QL06p039377 Quercus lobata HOM05D001716 ORTHO05D005286 4.6e-10 67.8 36 86.1
Sabra06G0093500 Salix brachista HOM05D001716 ORTHO05D005286 4.6e-10 67.8 36 80.6
SMO356G0332 Selaginella moellendorffii HOM05D001716 ORTHO05D005286 4.6e-10 67.8 35 88.6
Os06g0186900 Oryza sativa ssp. japonica HOM05D001716 ORTHO05D005286 6.0e-10 67.4 36 83.3
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 1.0e-09 66.6 36 86.1
AagrBONN_evm.TU.Sc2ySwM_228.3163 Anthoceros agrestis HOM05D001716 ORTHO05D005286 1.3e-09 66.2 36 83.3
Mapoly0016s0079 Marchantia polymorpha HOM05D001716 ORTHO05D005286 1.7e-09 65.9 36 83.3
Potri.006G118900 Populus trichocarpa HOM05D001716 ORTHO05D005286 3.0e-09 65.1 36 77.8
AagrBONN_evm.TU.Sc2ySwM_362.2421 Anthoceros agrestis HOM05D001716 ORTHO05D005286 8.7e-09 63.5 35 80.0
Haze_26491 Corylus avellana HOM05D001716 ORTHO05D005286 8.7e-09 63.5 35 80.0
CSS0024713 Camellia sinensis var. sinensis HOM05D001716 ORTHO05D005286 3.3e-08 61.6 36 80.6
vmacro11930 Vaccinium macrocarpon HOM05D001336 ORTHO05D001211 4.3e-08 61.2 37 83.8


User provided reference genes

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