Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 7.5e-189 663.7 332 100.0
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 3.4e-181 638.3 346 93.9
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 1.0e-177 626.7 338 94.4
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 2.2e-148 529.3 333 78.1
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 2.9e-148 528.9 332 76.5
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 1.9e-147 526.2 332 76.8
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 2.4e-147 525.8 332 75.9
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 7.1e-147 524.2 332 78.0
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 1.2e-146 523.5 334 77.2
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 4.6e-146 521.5 332 76.8
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 1.7e-145 519.6 333 75.7
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 1.1e-142 510.4 328 76.5
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 1.1e-142 510.4 328 76.8
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 2.4e-142 509.2 328 76.5
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 3.1e-142 508.8 328 76.2
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 9.0e-142 507.3 328 75.9
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 3.4e-141 505.4 332 73.8
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 4.4e-141 505.0 318 78.0
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 4.0e-134 481.9 331 69.2
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 3.4e-133 478.8 331 68.6
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 4.5e-133 478.4 331 67.7
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 5.8e-133 478.0 331 68.0
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 5.4e-131 471.5 327 67.3
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 1.6e-130 469.9 331 66.2
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 6.0e-130 468.0 331 67.1
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 3.0e-129 465.7 331 65.6
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 5.1e-129 464.9 331 67.1
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.3e-127 460.3 318 69.2
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 2.1e-127 459.5 331 64.0
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 2.1e-127 459.5 331 65.6
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 2.8e-127 459.1 328 67.1
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.4e-126 456.8 318 68.6
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.8e-126 456.4 318 68.9
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 3.1e-126 455.7 335 64.5
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 5.3e-126 454.9 328 66.5
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 6.9e-126 454.5 323 66.3
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 6.9e-126 454.5 332 66.9
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 1.2e-125 453.8 331 65.6
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 1.5e-125 453.4 332 65.1
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 2.0e-125 453.0 337 63.5
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 2.6e-125 452.6 328 65.9
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 3.4e-125 452.2 327 64.5
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.3e-124 450.3 325 66.2
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 1.3e-124 450.3 331 64.7
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 2.2e-124 449.5 331 62.8
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 3.8e-124 448.7 293 74.7
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 3.8e-124 448.7 331 62.8
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 6.4e-124 448.0 255 85.9
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 1.4e-123 446.8 327 63.6
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 2.4e-123 446.0 324 64.5
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 2.4e-123 446.0 331 64.0
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 4.2e-123 445.3 326 64.1
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 5.5e-123 444.9 331 63.7
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 4.6e-122 441.8 320 66.2
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 7.9e-122 441.0 319 65.2
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 1.0e-121 440.7 326 64.4
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.0e-121 440.7 332 63.6
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.3e-121 440.3 324 63.6
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 5.1e-121 438.3 327 63.3
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 2.1e-119 433.0 333 63.1
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 2.8e-119 432.6 270 77.8
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 4.8e-119 431.8 331 61.0
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 8.2e-119 431.0 326 63.8
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 1.1e-118 430.6 326 63.8
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 1.4e-118 430.3 331 61.3
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 5.3e-118 428.3 327 62.1
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 1.2e-117 427.2 310 64.8
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 2.5e-115 419.5 335 59.1
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.2e-115 419.1 330 60.3
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 7.1e-115 417.9 322 63.0
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 7.1e-115 417.9 333 59.8
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 9.3e-115 417.5 330 60.3
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 2.1e-114 416.4 311 64.0
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 1.8e-113 413.3 320 62.5
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 2.3e-113 412.9 239 79.9
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 5.1e-113 411.8 321 62.0
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 3.3e-112 409.1 326 59.8
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 3.3e-112 409.1 326 59.8
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 5.7e-112 408.3 396 52.3
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 1.8e-110 403.3 333 57.4
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 2.4e-110 402.9 326 59.5
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 5.3e-110 401.7 326 59.8
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 2.0e-109 399.8 328 58.5
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 2.6e-109 399.4 333 60.7
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 3.4e-109 399.1 320 60.0
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 5.9e-109 398.3 321 58.6
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 1.3e-108 397.1 332 59.0
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 2.2e-108 396.4 343 57.4
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 2.2e-108 396.4 333 58.3
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 2.9e-108 396.0 328 56.7
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 5.0e-108 395.2 331 58.9
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 8.5e-108 394.4 333 58.6
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 1.1e-107 394.0 334 59.3
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 5.1e-105 385.2 319 58.3
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 1.1e-104 384.0 273 64.5
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 1.1e-104 384.0 273 64.5
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 1.1e-104 384.0 329 57.8
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 3.3e-104 382.5 296 60.1
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 5.7e-104 381.7 261 66.3
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 4.8e-103 378.6 326 58.6
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 2.4e-102 376.3 327 58.1
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 2.4e-102 376.3 270 66.7
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 1.2e-101 374.0 294 61.9
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 4.5e-101 372.1 334 53.0
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 2.2e-100 369.8 327 54.4
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 3.8e-100 369.0 272 61.0
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 9.4e-99 364.4 335 53.4
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 7.9e-98 361.3 267 62.5
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 5.7e-96 355.1 321 53.9
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 9.7e-96 354.4 334 53.0
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 3.8e-92 342.4 270 58.5
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 4.7e-90 335.5 205 78.0
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 6.7e-89 331.6 312 54.5
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 8.8e-89 331.3 251 63.3
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 3.3e-88 329.3 323 49.8
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 9.7e-88 327.8 346 51.2
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 2.2e-87 326.6 299 54.2
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 3.7e-87 325.9 356 49.4
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 5.3e-86 322.0 275 54.9
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 5.2e-81 305.4 274 52.6
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 1.6e-77 293.9 329 44.1
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 8.5e-76 288.1 197 67.0
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 4.4e-72 275.8 176 71.6
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.9e-67 260.4 198 61.6
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.1e-62 244.6 212 54.7
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 1.8e-62 243.8 245 49.4
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.0e-61 240.4 304 43.8
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 1.0e-60 238.0 289 40.5
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 1.0e-57 228.0 340 40.0
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 7.5e-56 221.9 208 60.6
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 1.1e-54 218.0 208 60.1
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 3.3e-51 206.5 139 66.9
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 5.6e-51 205.7 256 42.2
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 7.3e-51 205.3 278 39.6
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 1.1e-49 201.4 157 61.8
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.2e-48 198.0 168 57.7
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 1.2e-45 188.0 204 49.0
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 4.6e-45 186.0 295 36.9
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 8.3e-39 165.2 129 61.2
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 3.9e-36 156.4 296 35.8
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 6.2e-34 149.1 155 47.7
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 3.9e-28 129.8 80 71.2
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 9.6e-27 125.2 120 52.5
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 2.1e-21 107.5 264 29.2
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 1.9e-19 100.9 112 45.5
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 4.3e-19 99.8 118 44.1
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 2.2e-15 87.4 92 48.9
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 2.2e-15 87.4 92 48.9
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.2e-14 83.6 112 39.3
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 7.4e-11 72.4 48 64.6
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 8.1e-10 68.9 68 52.9
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 2.0e-08 64.3 48 60.4
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 1.3e-07 61.6 71 43.7


User provided reference genes

Program Settings