Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p05930 Brassica napus HOM05D000115 ORTHO05D011879 7.3e-22 106.3 53 100.0
BcaB04g19689 Brassica carinata HOM05D000115 ORTHO05D000464 5.6e-14 80.1 62 72.6
Sp2g20960 Schrenkiella parvula HOM05D000115 ORTHO05D000464 2.8e-13 77.8 62 71.0
BcaNung04747 Brassica carinata HOM05D000115 ORTHO05D000464 4.8e-13 77.0 62 71.0
A06p37300 Brassica napus HOM05D000115 ORTHO05D000464 4.8e-13 77.0 62 71.0
BraA06t26653Z Brassica rapa HOM05D000115 ORTHO05D000464 4.8e-13 77.0 62 71.0
C07p41160 Brassica napus HOM05D000115 ORTHO05D000464 8.1e-13 76.3 62 71.0
BolC7t44644H Brassica oleracea HOM05D000115 ORTHO05D000464 8.1e-13 76.3 62 71.0
Thhalv10004612m.g Eutrema salsugineum HOM05D000115 ORTHO05D000464 2.4e-12 74.7 62 69.4
AL6G39100 Arabidopsis lyrata HOM05D000115 ORTHO05D000464 9.0e-12 72.8 62 71.0
AT5G27840 Arabidopsis thaliana HOM05D000115 ORTHO05D000464 9.0e-12 72.8 62 71.0
Aa31LG11G9590 Aethionema arabicum HOM05D000115 ORTHO05D000464 1.5e-11 72.0 62 64.5
BcaB07g34205 Brassica carinata HOM05D000115 ORTHO05D000464 3.4e-11 70.9 62 69.4
BcaC03g17809 Brassica carinata HOM05D000115 ORTHO05D000464 3.4e-11 70.9 62 69.4
A02p38780 Brassica napus HOM05D000115 ORTHO05D000464 3.4e-11 70.9 62 69.4
C02p58330 Brassica napus HOM05D000115 ORTHO05D000464 3.4e-11 70.9 62 69.4
BolC2t11897H Brassica oleracea HOM05D000115 ORTHO05D000464 3.4e-11 70.9 62 69.4
BraA02t08854Z Brassica rapa HOM05D000115 ORTHO05D000464 3.4e-11 70.9 62 69.4
AL3G16210 Arabidopsis lyrata HOM05D000115 ORTHO05D000464 2.9e-10 67.8 62 66.1
Carub.0003s0489 Capsella rubella HOM05D000115 ORTHO05D000464 2.9e-10 67.8 62 66.1
CARHR080010 Cardamine hirsuta HOM05D000115 ORTHO05D000464 2.9e-10 67.8 62 66.1
Thhalv10021158m.g Eutrema salsugineum HOM05D000115 ORTHO05D000464 2.9e-10 67.8 62 66.1
Sp3g04450 Schrenkiella parvula HOM05D000115 ORTHO05D000464 2.9e-10 67.8 62 66.1
THA.LOC104802792 Tarenaya hassleriana HOM05D000115 ORTHO05D000464 2.9e-10 67.8 63 65.1
BcaC09g47831 Brassica carinata HOM05D000115 ORTHO05D000464 3.8e-10 67.4 62 66.1
A03p34210 Brassica napus HOM05D000115 ORTHO05D000464 3.8e-10 67.4 62 66.1
BolC1t05685H Brassica oleracea HOM05D000115 ORTHO05D000464 3.8e-10 67.4 62 66.1
BolC3t16441H Brassica oleracea HOM05D000115 ORTHO05D000464 3.8e-10 67.4 62 66.1
BraA01t04481Z Brassica rapa HOM05D000115 ORTHO05D000464 3.8e-10 67.4 62 66.1
BraA03t12595Z Brassica rapa HOM05D000115 ORTHO05D000464 3.8e-10 67.4 62 66.1
THA.LOC104818727 Tarenaya hassleriana HOM05D000115 ORTHO05D000464 4.9e-10 67.0 63 66.7
AT3G05580 Arabidopsis thaliana HOM05D000115 ORTHO05D000464 6.4e-10 66.6 62 64.5
BcaB04g19256 Brassica carinata HOM05D000115 ORTHO05D000464 6.4e-10 66.6 62 64.5
C03p41600 Brassica napus HOM05D000115 ORTHO05D000464 6.4e-10 66.6 62 66.1
BcaB04g21438 Brassica carinata HOM05D000115 ORTHO05D000464 1.1e-09 65.9 62 64.5
Manes.09G171600 Manihot esculenta HOM05D000115 ORTHO05D000464 1.1e-09 65.9 62 64.5
Nitab4.5_0005982g0010 Nicotiana tabacum HOM05D000115 ORTHO05D000464 1.4e-09 65.5 66 60.6
Aa31LG5G16000 Aethionema arabicum HOM05D000115 ORTHO05D000464 1.9e-09 65.1 62 64.5
BcaC05g30107 Brassica carinata HOM05D000115 ORTHO05D000464 1.9e-09 65.1 62 64.5
C05p61630 Brassica napus HOM05D000115 ORTHO05D000464 1.9e-09 65.1 62 64.5
BolC5t34821H Brassica oleracea HOM05D000115 ORTHO05D000464 1.9e-09 65.1 62 64.5
BraA05t22957Z Brassica rapa HOM05D000115 ORTHO05D000464 1.9e-09 65.1 62 64.5
Cpa.g.sc48.102 Carica papaya HOM05D000115 ORTHO05D000464 9.3e-09 62.8 59 62.7
MSTRG.20406 Avicennia marina HOM05D000115 ORTHO05D000464 1.2e-08 62.4 61 65.6
Oeu043333.2 Olea europaea HOM05D000115 ORTHO05D000464 1.2e-08 62.4 61 63.9
Peaxi162Scf00471g00810 Petunia axillaris HOM05D000115 ORTHO05D000464 2.1e-08 61.6 61 60.7
Sabra05G0029500 Salix brachista HOM05D000115 ORTHO05D000464 2.1e-08 61.6 63 60.3
CsaV3_2G006670 Cucumis sativus L. HOM05D000115 ORTHO05D000464 2.7e-08 61.2 64 60.9
Manes.08G116400 Manihot esculenta HOM05D000115 ORTHO05D000464 2.7e-08 61.2 61 57.4
Peaxi162Scf00037g01324 Petunia axillaris HOM05D000115 ORTHO05D000464 2.7e-08 61.2 61 59.0
Potri.005G024100 Populus trichocarpa HOM05D000115 ORTHO05D000464 2.7e-08 61.2 62 61.3
Solyc01g099860.3 Solanum lycopersicum HOM05D000115 ORTHO05D000464 2.7e-08 61.2 61 59.0
Sopen01g043370 Solanum pennellii HOM05D000115 ORTHO05D000464 2.7e-08 61.2 61 59.0
PGSC0003DMG402024761 Solanum tuberosum HOM05D000115 ORTHO05D000464 2.7e-08 61.2 61 59.0
MSTRG.27975 Avicennia marina HOM05D000115 ORTHO05D000464 3.5e-08 60.8 61 62.3
MSTRG.5115 Avicennia marina HOM05D000115 ORTHO05D000464 3.5e-08 60.8 61 62.3
CAN.G1459.24 Capsicum annuum HOM05D000115 ORTHO05D000464 3.5e-08 60.8 61 59.0
SGA_v2.0_scaffold81G26099 Striga asiatica HOM05D000115 ORTHO05D011879 4.6e-08 60.5 64 60.9
Thecc.05G314500 Theobroma cacao HOM05D000115 ORTHO05D000464 4.6e-08 60.5 66 57.6
EL10Ac4g09900 Beta vulgaris HOM05D000115 ORTHO05D000464 6.0e-08 60.1 62 58.1
ClCG02G015410 Citrullus lanatus HOM05D000115 ORTHO05D000464 6.0e-08 60.1 65 60.0
Oeu017268.1 Olea europaea HOM05D000115 ORTHO05D000464 6.0e-08 60.1 61 62.3
MELO3C004221.2 Cucumis melo HOM05D000115 ORTHO05D000464 7.9e-08 59.7 64 60.9
Migut.N02093 Erythranthe guttata HOM05D000115 ORTHO05D000464 7.9e-08 59.7 61 62.3
SGA_v2.0_scaffold172G38994 Striga asiatica HOM05D000115 ORTHO05D000464 7.9e-08 59.7 61 60.7
Nitab4.5_0003113g0090 Nicotiana tabacum HOM05D000115 ORTHO05D000464 1.0e-07 59.3 61 57.4
Nitab4.5_0007800g0040 Nicotiana tabacum HOM05D000115 ORTHO05D000464 1.0e-07 59.3 61 57.4
SalBow3G2165 Salvia bowleyana HOM05D000115 ORTHO05D000464 1.0e-07 59.3 61 59.0
Hund21719 Selenicereus undatus HOM05D000115 ORTHO05D000464 1.0e-07 59.3 63 60.3
Ca_09347_v3 Cicer arietinum L. HOM05D000115 ORTHO05D000464 1.3e-07 58.9 60 58.3
Gorai.007G301000 Gossypium raimondii HOM05D000115 ORTHO05D000464 1.8e-07 58.5 67 55.2
AUR62000744 Chenopodium quinoa HOM05D000115 ORTHO05D000464 2.3e-07 58.2 63 60.3
AUR62005220 Chenopodium quinoa HOM05D000115 ORTHO05D000464 2.3e-07 58.2 63 60.3
COL.COLO4_10537 Corchorus olitorius HOM05D000115 ORTHO05D000464 2.3e-07 58.2 66 56.1
Dinv40352 Davidia involucrata HOM05D000115 ORTHO05D000464 2.3e-07 58.2 64 59.4
Ciclev10001659m.g Citrus clementina HOM05D000115 ORTHO05D000464 3.0e-07 57.8 67 55.2
Cc02_g34320 Coffea canephora HOM05D000115 ORTHO05D000464 3.0e-07 57.8 55 63.6
Duzib177G0540 Durio zibethinus HOM05D000115 ORTHO05D000464 3.0e-07 57.8 66 54.5
Migut.B01015 Erythranthe guttata HOM05D000115 ORTHO05D000464 3.0e-07 57.8 61 59.0
Gohir.A11G294000 Gossypium hirsutum HOM05D000115 ORTHO05D000464 3.0e-07 57.8 61 54.1
Potri.013G014700 Populus trichocarpa HOM05D000115 ORTHO05D000464 3.0e-07 57.8 62 58.1
Haze_04126 Corylus avellana HOM05D000115 ORTHO05D011879 3.9e-07 57.4 62 58.1
Gohir.A11G268750 Gossypium hirsutum HOM05D000115 ORTHO05D000464 3.9e-07 57.4 66 54.5
Lj5C370G3 Lonicera japonica HOM05D000115 ORTHO05D000464 3.9e-07 57.4 65 56.9
arahy.Tifrunner.gnm1.ann1.DP3C2W Arachis hypogaea HOM05D000115 ORTHO05D000464 5.1e-07 57.0 62 59.7
arahy.Tifrunner.gnm1.ann1.UMM9A2 Arachis hypogaea HOM05D000115 ORTHO05D000464 5.1e-07 57.0 62 59.7
Cfa006641 Carpinus fangiana HOM05D000115 ORTHO05D000464 5.1e-07 57.0 62 58.1
Gohir.D11G278800 Gossypium hirsutum HOM05D000115 ORTHO05D000464 5.1e-07 57.0 66 54.5
Lalb_Chr04g0260651 Lupinus albus HOM05D000115 ORTHO05D000464 5.1e-07 57.0 62 59.7
Lalb_Chr18g0045831 Lupinus albus HOM05D000115 ORTHO05D000464 5.1e-07 57.0 62 59.7
Medtr7g112870 Medicago truncatula HOM05D000115 ORTHO05D000464 5.1e-07 57.0 65 58.5
Hund07107 Selenicereus undatus HOM05D000115 ORTHO05D000464 5.1e-07 57.0 62 58.1
CSS0005998 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D000464 6.7e-07 56.6 65 56.9
Lj9A180G102 Lonicera japonica HOM05D000115 ORTHO05D000464 6.7e-07 56.6 65 55.4
TPR.G1628 Trifolium pratense HOM05D000115 ORTHO05D000464 6.7e-07 56.6 62 56.5
TAR365G0125 Trochodendron aralioides HOM05D000115 ORTHO05D000464 6.7e-07 56.6 63 57.1
CSS0048412 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D000464 8.7e-07 56.2 58 60.3
Duzib128G1017 Durio zibethinus HOM05D000115 ORTHO05D000464 8.7e-07 56.2 66 53.0
Gohir.D11G309000 Gossypium hirsutum HOM05D000115 ORTHO05D000464 8.7e-07 56.2 61 52.5
Gorai.007G340900 Gossypium raimondii HOM05D000115 ORTHO05D000464 8.7e-07 56.2 61 52.5
PSO210G7131 Papaver somniferum HOM05D000115 ORTHO05D000464 8.7e-07 56.2 69 52.2
PSO832G3973 Papaver somniferum HOM05D000115 ORTHO05D000464 8.7e-07 56.2 69 52.2
QL03p019887 Quercus lobata HOM05D000115 ORTHO05D000464 8.7e-07 56.2 58 62.1
Ah.06g189890 Amaranthus hybridus HOM05D000115 ORTHO05D000464 1.1e-06 55.8 63 57.1
Duzib106G1973 Durio zibethinus HOM05D000115 ORTHO05D000464 1.1e-06 55.8 67 53.7
ECA234G1191 Erigeron canadensis HOM05D000115 ORTHO05D000464 1.1e-06 55.8 65 55.4
Eucgr.B01909 Eucalyptus grandis HOM05D000115 ORTHO05D000464 1.1e-06 55.8 63 58.7
FvH4_6g06810 Fragaria vesca HOM05D000115 ORTHO05D000464 1.1e-06 55.8 63 57.1
FAN02G2798 Fragaria x ananassa HOM05D000115 ORTHO05D000464 1.1e-06 55.8 63 57.1
FAN09G2818 Fragaria x ananassa HOM05D000115 ORTHO05D000464 1.1e-06 55.8 63 57.1
FAN14G2390 Fragaria x ananassa HOM05D000115 ORTHO05D000464 1.1e-06 55.8 63 57.1
RcHm_v2.0_Chr3g0456301 Rosa chinensis HOM05D000115 ORTHO05D000464 1.1e-06 55.8 64 56.2
vmacro19697 Vaccinium macrocarpon HOM05D000115 ORTHO05D000464 1.1e-06 55.8 65 55.4
Ah.04g161360 Amaranthus hybridus HOM05D000115 ORTHO05D000464 1.5e-06 55.5 62 58.1
CiPaw.07G022800 Carya illinoinensis HOM05D000115 ORTHO05D000464 1.5e-06 55.5 58 60.3
Eucgr.H04547 Eucalyptus grandis HOM05D000115 ORTHO05D000464 1.5e-06 55.5 55 58.2
Glyma.03G234700 Glycine max HOM05D000115 ORTHO05D000464 1.5e-06 55.5 57 61.4
Glyma.19G232300 Glycine max HOM05D000115 ORTHO05D000464 1.5e-06 55.5 57 61.4
Hma1.2p1_1021F.1_g248640 Hydrangea macrophylla HOM05D000115 ORTHO05D000464 1.5e-06 55.5 65 56.9
PGR083G1035 Punica granatum HOM05D000115 ORTHO05D000464 1.5e-06 55.5 63 55.6
VMungo0540G1850 Vigna mungo HOM05D000115 ORTHO05D000464 1.5e-06 55.5 60 55.0
Actinidia21501 Actinidia chinensis HOM05D000115 ORTHO05D000464 1.9e-06 55.1 65 55.4
CiPaw.08G160900 Carya illinoinensis HOM05D000115 ORTHO05D000464 1.9e-06 55.1 58 60.3
DCAR_029385 Daucus carota HOM05D000115 ORTHO05D000464 1.9e-06 55.1 65 52.3
HanXRQChr11g0339831 Helianthus annuus HOM05D000115 ORTHO05D000464 1.9e-06 55.1 65 53.8
Lj9C186G10 Lonicera japonica HOM05D000115 ORTHO05D000464 1.9e-06 55.1 64 54.7
Lj1g0025519 Lotus japonicus HOM05D000115 ORTHO05D000464 1.9e-06 55.1 57 61.4
Nn3g21518 Nelumbo nucifera HOM05D000115 ORTHO05D000464 1.9e-06 55.1 69 53.6
Rhsim05G0137700 Rhododendron simsii HOM05D000115 ORTHO05D000464 1.9e-06 55.1 65 55.4
Phvul.006G088900 Phaseolus vulgaris HOM05D000115 ORTHO05D000464 2.5e-06 54.7 54 59.3
SalBow7G0476 Salvia bowleyana HOM05D000115 ORTHO05D000464 2.5e-06 54.7 48 64.6
TWI36G0532 Tripterygium wilfordii HOM05D000115 ORTHO05D000464 2.5e-06 54.7 67 55.2
TWI56G0644 Tripterygium wilfordii HOM05D000115 ORTHO05D000464 2.5e-06 54.7 68 54.4
TAR636G1694 Trochodendron aralioides HOM05D000115 ORTHO05D002564 2.5e-06 54.7 60 56.7
Dinv30827 Davidia involucrata HOM05D000115 ORTHO05D000464 3.3e-06 54.3 63 55.6
HanXRQChr10g0299351 Helianthus annuus HOM05D000115 ORTHO05D000464 3.3e-06 54.3 65 55.4
HanXRQChr16g0513501 Helianthus annuus HOM05D000115 ORTHO05D000464 3.3e-06 54.3 65 55.4
Lsat_1_v5_gn_5_147300 Lactuca sativa HOM05D000115 ORTHO05D000464 3.3e-06 54.3 65 55.4
MD12G1210900 Malus domestica HOM05D000115 ORTHO05D000464 3.3e-06 54.3 65 55.4
Sed0027230 Sechium edule HOM05D000115 ORTHO05D000464 3.3e-06 54.3 64 56.2
SMO347G0046 Selaginella moellendorffii HOM05D000115 ORTHO05D000464 3.3e-06 54.3 64 50.0
Aqoxy204s001 Aquilegia oxysepala HOM05D000115 ORTHO05D000464 4.3e-06 53.9 68 51.5
Aqoxy2G02930 Aquilegia oxysepala HOM05D000115 ORTHO05D000464 4.3e-06 53.9 68 51.5
Gorai.004G239200 Gossypium raimondii HOM05D000115 ORTHO05D000464 4.3e-06 53.9 65 53.8
MD04G1083500 Malus domestica HOM05D000115 ORTHO05D011879 4.3e-06 53.9 61 57.4
MD04G1198300 Malus domestica HOM05D000115 ORTHO05D000464 4.3e-06 53.9 61 57.4
GSVIVG01031180001 Vitis vinifera HOM05D000115 ORTHO05D000464 4.3e-06 53.9 64 54.7
Prupe.6G318800 Prunus persica HOM05D000115 ORTHO05D000464 5.6e-06 53.5 58 55.2
Rhsim13G0076400 Rhododendron simsii HOM05D000115 ORTHO05D000464 5.6e-06 53.5 55 54.5
Sc06g0003900 Simmondsia chinensis HOM05D000115 ORTHO05D000464 5.6e-06 53.5 63 54.0
DCAR_003367 Daucus carota HOM05D000115 ORTHO05D000464 7.4e-06 53.1 62 53.2
SEGI_30460 Sequoiadendron giganteum HOM05D000115 ORTHO05D000464 7.4e-06 53.1 59 54.2
Sc16g0008770 Simmondsia chinensis HOM05D000115 ORTHO05D000464 7.4e-06 53.1 63 57.1
HPP92_017225 Vanilla planifolia HOM05D000115 ORTHO05D000464 9.6e-06 52.8 51 56.9


User provided reference genes

Program Settings