Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 2.8e-307 1057.7 528 100.0
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 5.0e-296 1020.4 531 96.2
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 2.8e-291 1004.6 534 94.6
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 2.7e-289 998.0 528 95.8
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 3.5e-289 997.7 528 95.8
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 4.4e-268 927.5 532 90.2
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 4.7e-262 907.5 544 84.7
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 2.3e-261 905.2 540 85.0
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 2.8e-254 881.7 538 81.8
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 1.5e-252 875.9 483 89.9
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 2.0e-252 875.5 534 81.6
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.4e-250 869.4 478 89.7
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.4e-250 869.4 478 89.7
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 2.1e-249 865.5 477 89.7
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 6.0e-249 864.0 477 89.5
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.0e-248 863.2 538 80.1
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 4.3e-247 857.8 540 78.5
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 2.8e-246 855.1 548 77.6
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 2.8e-246 855.1 477 88.5
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 8.1e-230 800.4 548 73.5
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 5.1e-216 754.6 497 73.0
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 1.9e-215 752.7 557 67.9
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 2.5e-215 752.3 494 73.1
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.3e-214 750.0 497 72.6
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 4.8e-214 748.0 475 75.6
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 9.0e-213 743.8 539 69.4
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 1.2e-212 743.4 475 74.5
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.2e-212 743.4 475 74.9
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 2.2e-211 739.2 479 74.3
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 2.5e-210 735.7 475 73.5
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 5.5e-210 734.6 544 66.9
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 7.2e-210 734.2 492 72.4
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 9.4e-210 733.8 539 66.8
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.0e-208 728.8 550 65.8
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 3.0e-208 728.8 478 73.4
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 5.1e-208 728.0 475 72.0
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 6.7e-208 727.6 493 71.0
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.5e-207 726.5 474 73.8
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.9e-207 726.1 534 67.6
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 4.8e-206 721.5 497 69.0
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.1e-205 720.3 475 71.6
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 1.1e-205 720.3 473 71.7
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 3.1e-205 718.8 474 72.6
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 6.9e-205 717.6 506 68.6
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 6.9e-205 717.6 473 71.9
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.4e-204 715.3 493 69.6
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 5.9e-204 714.5 543 65.6
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 7.7e-204 714.1 466 71.5
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.0e-203 713.8 544 66.2
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 1.7e-203 713.0 501 69.3
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 2.2e-203 712.6 511 66.5
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 2.2e-203 712.6 557 64.6
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 1.1e-202 710.3 515 66.4
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 2.1e-201 706.1 502 67.7
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 2.7e-201 705.7 514 66.3
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 4.7e-201 704.9 474 71.3
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 6.1e-201 704.5 525 65.9
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.0e-200 703.7 560 63.4
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.3e-200 702.6 516 67.1
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 2.3e-200 702.6 544 65.4
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 5.1e-200 701.4 545 64.2
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 6.7e-200 701.0 474 69.8
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 8.8e-200 700.7 521 67.8
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 5.7e-199 698.0 565 62.3
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 5.7e-199 698.0 544 63.6
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.3e-198 696.8 502 66.7
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.3e-198 696.8 463 71.1
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 1.3e-198 696.8 467 70.9
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 2.2e-198 696.0 573 62.3
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 2.8e-198 695.7 530 64.7
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 8.2e-198 694.1 489 68.9
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.8e-197 693.0 476 69.3
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 4.1e-197 691.8 543 65.4
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.2e-196 690.3 532 64.1
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.5e-196 689.9 535 64.5
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 4.5e-196 688.3 487 68.0
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.9e-194 682.9 532 63.7
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.5e-194 682.6 523 65.2
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 4.2e-194 681.8 533 62.5
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.0e-193 677.6 513 65.7
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 8.0e-193 677.6 523 64.2
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 8.0e-193 677.6 572 60.3
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.8e-192 676.4 513 65.7
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.5e-191 673.3 532 62.6
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 2.6e-191 672.5 456 70.0
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 4.4e-191 671.8 539 61.0
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 4.4e-191 671.8 555 60.7
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 1.7e-190 669.8 478 65.7
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.7e-190 669.8 497 66.4
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 2.8e-190 669.1 459 70.4
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 3.7e-190 668.7 486 66.9
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.3e-190 667.9 512 64.6
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 6.3e-190 667.9 458 69.7
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.8e-189 666.4 466 68.2
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.4e-189 666.0 544 61.8
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 5.3e-189 664.8 471 65.8
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 5.3e-189 664.8 545 62.2
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 7.0e-189 664.5 549 62.3
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 9.1e-189 664.1 487 65.3
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.2e-188 663.7 490 65.3
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.3e-187 660.2 467 69.8
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.1e-186 657.1 549 61.7
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.1e-186 657.1 620 57.6
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 1.9e-186 656.4 473 66.8
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 4.7e-185 651.7 471 66.9
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.8e-184 649.8 513 63.7
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.8e-184 649.8 521 62.4
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 2.3e-184 649.4 470 65.1
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.7e-183 644.8 467 68.1
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 2.8e-182 642.5 486 64.0
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 3.1e-181 639.0 651 51.5
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 3.5e-172 609.0 506 62.3
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 5.9e-172 608.2 599 55.8
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.3e-171 607.1 498 59.2
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 5.0e-163 578.6 524 58.6
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.6e-161 573.5 363 76.0
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 1.6e-156 557.0 390 68.7
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 6.0e-156 555.1 366 72.1
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.3e-155 553.9 467 58.9
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 7.0e-149 531.6 549 52.5
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 3.0e-147 526.2 464 55.2
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.7e-142 510.4 461 55.5
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 6.4e-142 508.4 478 57.1
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.4e-141 507.3 361 67.9
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.0e-139 499.6 520 51.3
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 5.8e-135 485.3 326 71.8
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 5.4e-133 478.8 358 65.9
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 2.1e-132 476.9 378 64.0
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 7.6e-127 458.4 373 59.8
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 6.9e-120 435.3 289 69.9
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.1e-109 401.4 482 45.6
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 4.6e-108 396.0 472 45.6
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 3.3e-106 389.8 360 56.1
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 3.1e-104 383.3 249 71.9
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 4.5e-103 379.4 329 58.7
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 7.7e-95 352.1 219 74.4
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 7.2e-93 345.5 215 74.4
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 2.1e-92 344.0 245 68.6
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 3.6e-92 343.2 216 74.5
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 1.3e-89 334.7 225 71.6
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 6.3e-89 332.4 454 41.4
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 7.7e-87 325.5 272 57.0
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.0e-86 325.1 267 61.8
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 3.9e-83 313.2 227 64.8
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 5.0e-78 296.2 462 36.8
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 5.5e-77 292.7 204 65.7
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.2e-76 291.6 185 75.7
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 1.1e-72 278.5 266 50.8
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 7.0e-64 249.2 225 56.4
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.9e-62 243.8 279 49.5
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.8e-59 234.6 490 33.7
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.0e-59 233.8 184 65.8
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 3.8e-54 216.9 161 62.7
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 6.1e-52 209.5 277 44.8
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 1.4e-51 208.4 104 93.3
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 2.3e-51 207.6 155 69.0
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.1e-48 196.8 131 69.5
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.6e-44 184.9 114 78.1
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.3e-43 181.0 125 64.8
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 9.2e-40 169.1 124 62.9
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.2e-39 168.7 321 39.9
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 2.7e-39 167.5 354 35.3
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.3e-38 165.2 134 56.0
C06p44380 Brassica napus HOM05D002285 ORTHO05D004192 1.5e-34 151.8 93 86.0
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 5.1e-30 136.7 95 67.4
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 1.1e-29 135.6 88 69.3
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.3e-29 134.0 76 80.3
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 8.1e-28 129.4 100 65.0
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.8e-27 128.3 182 43.4
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 5.2e-27 126.7 77 77.9
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 3.4e-26 124.0 102 60.8
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 4.9e-25 120.2 64 87.5
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 6.0e-23 113.2 64 78.1
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 1.9e-21 108.2 94 55.3
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.9e-21 108.2 71 70.4
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 9.6e-21 105.9 79 63.3
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 4.0e-19 100.5 94 47.9
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 5.2e-19 100.1 48 95.8
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 3.8e-17 94.0 65 63.1
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 6.4e-17 93.2 80 55.0
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 3.2e-16 90.9 84 54.8
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 3.3e-13 80.9 64 56.2
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.6e-13 80.1 161 37.9
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 8.1e-12 76.3 48 72.9
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 5.3e-11 73.6 51 62.7
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.4e-10 70.9 111 42.3
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.7e-07 61.2 158 32.3


User provided reference genes

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