Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p04900 Brassica napus HOM05D009323 ORTHO05D012741 7.8e-163 577.0 282 100.0
BolC9t53418H Brassica oleracea HOM05D009323 ORTHO05D012741 1.9e-161 572.4 282 98.9
BraA09t36094Z Brassica rapa HOM05D009323 ORTHO05D012741 4.0e-151 538.1 283 93.6
BcaC04g23767 Brassica carinata HOM05D009323 ORTHO05D012741 1.1e-121 440.3 215 98.6
A09p04590 Brassica napus HOM05D009323 ORTHO05D012741 2.0e-113 412.9 216 93.1
BcaB04g19582 Brassica carinata HOM05D009323 ORTHO05D012741 5.3e-103 378.3 220 87.3
AT5G48657 Arabidopsis thaliana HOM05D009323 ORTHO05D012741 3.8e-85 318.9 278 65.8
A06p39000 Brassica napus HOM05D009323 ORTHO05D012741 1.4e-79 300.4 222 72.1
Thhalv10004864m.g Eutrema salsugineum HOM05D009323 ORTHO05D012741 2.9e-77 292.7 223 69.1
Carub.0008s0835 Capsella rubella HOM05D009323 ORTHO05D012741 2.5e-76 289.7 220 70.0
C07p39330 Brassica napus HOM05D009323 ORTHO05D012741 9.5e-76 287.7 219 70.8
BolC7t44453H Brassica oleracea HOM05D009323 ORTHO05D012741 9.5e-76 287.7 219 70.8
AL8G21710 Arabidopsis lyrata HOM05D009323 ORTHO05D012741 3.0e-74 282.7 220 70.0
CARHR183260 Cardamine hirsuta HOM05D009323 ORTHO05D012741 3.0e-74 282.7 220 67.7
Sp2g19070 Schrenkiella parvula HOM05D009323 ORTHO05D012741 8.3e-72 274.6 223 69.1
BcaC06g30771 Brassica carinata HOM05D009323 ORTHO05D012741 3.4e-65 252.7 224 64.7
BraA06t26814Z Brassica rapa HOM05D009323 ORTHO05D012741 1.7e-64 250.4 190 71.1
Aa31sc571G10 Aethionema arabicum HOM05D009323 ORTHO05D012741 3.0e-53 213.0 226 59.7
Carub.0003s0671 Capsella rubella HOM05D009323 ORTHO05D015248 8.4e-32 141.7 237 44.7
BolC3t16543H Brassica oleracea HOM05D009323 ORTHO05D015248 1.3e-27 127.9 221 43.0
A03p35140 Brassica napus HOM05D009323 ORTHO05D015248 1.6e-27 127.5 221 43.0
THA.LOC104818969 Tarenaya hassleriana HOM05D009323 ORTHO05D012741 2.8e-27 126.7 221 40.7
BraA03t12694Z Brassica rapa HOM05D009323 ORTHO05D015248 1.8e-26 124.0 221 42.5
THA.LOC104802661 Tarenaya hassleriana HOM05D009323 ORTHO05D012741 5.8e-25 119.0 236 40.3
CARHR081840 Cardamine hirsuta HOM05D009323 ORTHO05D015248 1.7e-24 117.5 218 41.7
Thhalv10021478m.g Eutrema salsugineum HOM05D009323 ORTHO05D015248 1.8e-21 107.5 231 40.3
Sp3g06140 Schrenkiella parvula HOM05D009323 ORTHO05D015248 4.3e-20 102.8 218 37.2
BcaC05g29747 Brassica carinata HOM05D002516 ORTHO05D002703 3.7e-19 99.8 228 38.2
Aa31LG5G17760 Aethionema arabicum HOM05D009323 ORTHO05D015248 1.8e-18 97.4 207 37.2
AL3G18460 Arabidopsis lyrata HOM05D009323 ORTHO05D015248 3.4e-17 93.2 237 38.8
BcaC05g29849 Brassica carinata HOM05D002516 ORTHO05D002703 1.9e-15 87.4 213 37.1
AT3G07195 Arabidopsis thaliana HOM05D009323 ORTHO05D015248 4.2e-15 86.3 235 35.7
BolC5t34668H Brassica oleracea HOM05D009323 ORTHO05D015248 4.2e-15 86.3 222 36.0
BraA05t22828Z Brassica rapa HOM05D002516 ORTHO05D002703 4.3e-12 76.3 199 35.7
A05p41010 Brassica napus HOM05D002516 ORTHO05D002703 2.8e-11 73.6 198 35.4
Duzib133G1090 Durio zibethinus HOM05D002186 ORTHO05D002225 1.8e-10 70.9 271 33.6
Thecc.01G221600 Theobroma cacao HOM05D002186 ORTHO05D002225 1.8e-10 70.9 271 31.7
Actinidia09472 Actinidia chinensis HOM05D002186 ORTHO05D002225 9.0e-10 68.6 277 30.7
C03p42750 Brassica napus HOM05D009323 ORTHO05D015248 1.2e-09 68.2 57 57.9
Sabra02G0186700 Salix brachista HOM05D002186 ORTHO05D002225 3.4e-09 66.6 270 31.1
MSTRG.20966 Avicennia marina HOM05D002186 ORTHO05D002225 4.5e-09 66.2 260 33.1
Duzib138G0625 Durio zibethinus HOM05D002186 ORTHO05D002225 5.9e-09 65.9 271 31.0
QL09p051777 Quercus lobata HOM05D002186 ORTHO05D002225 5.9e-09 65.9 270 30.0
Gorai.001G232400 Gossypium raimondii HOM05D002186 ORTHO05D002225 7.6e-09 65.5 266 28.2
Migut.N00628 Erythranthe guttata HOM05D002186 ORTHO05D002225 1.3e-08 64.7 247 29.1
Gohir.D07G206100 Gossypium hirsutum HOM05D002186 ORTHO05D002225 1.7e-08 64.3 266 27.8
MD10G1160600 Malus domestica HOM05D002186 ORTHO05D002225 2.9e-08 63.5 257 31.9
QL09p052490 Quercus lobata HOM05D002186 ORTHO05D002225 2.9e-08 63.5 272 29.4
Dinv19181 Davidia involucrata HOM05D002186 ORTHO05D002225 5.0e-08 62.8 172 37.2
Atru.chr6.1419 Acer truncatum HOM05D002186 ORTHO05D002225 6.5e-08 62.4 266 28.9
PGSC0003DMG400027945 Solanum tuberosum HOM05D002186 ORTHO05D002225 6.5e-08 62.4 264 29.2
TAR636G0289 Trochodendron aralioides HOM05D002186 ORTHO05D002225 8.4e-08 62.0 276 30.4
Gohir.A07G199700 Gossypium hirsutum HOM05D002186 ORTHO05D002225 1.1e-07 61.6 266 28.6
AT3G25070 Arabidopsis thaliana HOM05D002186 ORTHO05D002225 1.4e-07 61.2 237 30.4
Gohir.D08G212670 Gossypium hirsutum HOM05D002186 ORTHO05D002225 1.4e-07 61.2 278 29.9
Gorai.004G226600 Gossypium raimondii HOM05D002186 ORTHO05D002225 1.4e-07 61.2 278 29.9
Gohir.A08G195300 Gossypium hirsutum HOM05D002186 ORTHO05D002225 2.5e-07 60.5 267 30.7
Sopen09g022570 Solanum pennellii HOM05D002186 ORTHO05D002225 2.5e-07 60.5 261 27.2
AL3G40780 Arabidopsis lyrata HOM05D002186 ORTHO05D002225 3.2e-07 60.1 231 30.7
CSS0016957 Camellia sinensis var. sinensis HOM05D002186 ORTHO05D002225 3.2e-07 60.1 261 28.7
CSS0037554 Camellia sinensis var. sinensis HOM05D002186 ORTHO05D002225 3.2e-07 60.1 261 28.7
Carub.0003s2542 Capsella rubella HOM05D002186 ORTHO05D002225 4.2e-07 59.7 231 32.0
RcHm_v2.0_Chr6g0284211 Rosa chinensis HOM05D002186 ORTHO05D002225 4.2e-07 59.7 264 30.3
C05p60160 Brassica napus HOM05D002516 ORTHO05D002703 5.5e-07 59.3 64 54.7
Aa31LG8G11940 Aethionema arabicum HOM05D002186 ORTHO05D002225 7.2e-07 58.9 219 29.2
FvH4_2g18650 Fragaria vesca HOM05D002186 ORTHO05D002225 7.2e-07 58.9 264 29.9
FAN24G2024 Fragaria x ananassa HOM05D002186 ORTHO05D002225 7.2e-07 58.9 264 29.9
THA.LOC104821655 Tarenaya hassleriana HOM05D002186 ORTHO05D002225 9.3e-07 58.5 231 30.7
CARHR101410 Cardamine hirsuta HOM05D002186 ORTHO05D002225 2.1e-06 57.4 234 29.9
BcaC01g03246 Brassica carinata HOM05D002186 ORTHO05D002225 2.7e-06 57.0 227 30.8
Hma1.2p1_0149F.1_g066350 Hydrangea macrophylla HOM05D002186 ORTHO05D002225 3.5e-06 56.6 237 29.1
MSTRG.17997 Avicennia marina HOM05D002186 ORTHO05D002225 6.1e-06 55.8 248 28.6


User provided reference genes

Program Settings