Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 1.7e-73 279.3 139 100.0
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 1.7e-73 279.3 139 100.0
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 3.1e-72 275.0 137 99.3
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 3.1e-72 275.0 137 99.3
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 1.4e-56 223.0 143 85.3
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 1.8e-56 222.6 143 83.2
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 2.0e-55 219.2 141 83.0
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 2.7e-55 218.8 143 83.9
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 8.0e-52 207.2 146 82.9
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 1.0e-51 206.8 143 81.1
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 3.7e-49 198.4 141 78.0
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 1.8e-48 196.1 144 75.7
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 9.2e-48 193.7 142 76.8
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 2.1e-44 182.6 142 71.8
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 3.4e-42 175.3 113 81.4
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 7.8e-39 164.1 137 67.2
BolC2t11399H Brassica oleracea HOM05D006427 ORTHO05D008147 5.2e-35 151.4 108 80.6
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 2.4e-32 142.5 132 59.8
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 6.6e-30 134.4 139 52.5
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 8.6e-30 134.0 143 54.5
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 1.9e-29 132.9 142 54.2
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 1.9e-29 132.9 138 55.1
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 5.6e-29 131.3 141 51.1
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 5.6e-29 131.3 128 55.5
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 1.2e-28 130.2 136 55.9
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 1.2e-28 130.2 141 51.1
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 2.8e-28 129.0 131 57.3
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 2.8e-28 129.0 146 52.1
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 6.2e-28 127.9 127 56.7
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 6.2e-28 127.9 139 55.4
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 8.1e-28 127.5 146 51.4
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 1.8e-27 126.3 150 53.3
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 3.1e-27 125.6 144 53.5
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 4.0e-27 125.2 146 50.7
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 6.8e-27 124.4 149 51.0
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 6.8e-27 124.4 134 51.5
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 8.9e-27 124.0 149 49.0
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 8.9e-27 124.0 140 53.6
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 1.2e-26 123.6 139 51.8
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 1.5e-26 123.2 145 53.8
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 2.0e-26 122.9 136 54.4
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 2.6e-26 122.5 145 49.0
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 4.4e-26 121.7 142 49.3
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 7.6e-26 120.9 141 51.8
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 9.9e-26 120.6 144 50.7
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 1.3e-25 120.2 144 52.1
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 1.3e-25 120.2 145 51.7
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 1.7e-25 119.8 144 52.8
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.7e-25 119.8 136 51.5
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 2.2e-25 119.4 144 49.3
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 2.2e-25 119.4 143 53.8
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 2.2e-25 119.4 139 52.5
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 3.7e-25 118.6 136 54.4
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 3.7e-25 118.6 131 51.9
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 3.7e-25 118.6 137 54.7
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 3.7e-25 118.6 140 50.7
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 3.7e-25 118.6 146 52.7
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 4.9e-25 118.2 142 50.7
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 6.4e-25 117.9 147 51.7
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 6.4e-25 117.9 136 50.7
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 1.1e-24 117.1 139 52.5
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 1.1e-24 117.1 142 48.6
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 1.4e-24 116.7 148 50.0
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 1.4e-24 116.7 148 50.0
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 1.4e-24 116.7 97 63.9
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.9e-24 116.3 137 53.3
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 1.9e-24 116.3 137 53.3
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 1.9e-24 116.3 147 51.0
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 3.2e-24 115.5 140 50.0
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 3.2e-24 115.5 147 49.0
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 4.1e-24 115.2 147 47.6
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 5.4e-24 114.8 142 51.4
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 5.4e-24 114.8 143 49.7
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 7.1e-24 114.4 143 51.0
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 9.2e-24 114.0 143 49.0
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 9.2e-24 114.0 145 48.3
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 9.2e-24 114.0 145 49.0
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 1.2e-23 113.6 140 50.7
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 1.6e-23 113.2 162 47.5
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 2.7e-23 112.5 136 47.1
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 3.5e-23 112.1 130 49.2
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 4.6e-23 111.7 167 46.1
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 6.0e-23 111.3 78 67.9
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 7.8e-23 110.9 148 50.0
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 1.3e-22 110.2 79 67.1
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 1.7e-22 109.8 138 47.8
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 2.3e-22 109.4 144 46.5
ECA234G1075 Erigeron canadensis HOM05D006427 ORTHO05D008147 3.0e-22 109.0 96 55.2
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 3.9e-22 108.6 128 50.0
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 8.6e-22 107.5 138 50.0
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 1.1e-21 107.1 140 48.6
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 1.5e-21 106.7 135 48.1
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 2.5e-21 105.9 106 55.7
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 3.3e-21 105.5 90 62.2
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 3.3e-21 105.5 143 49.0
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 9.6e-21 104.0 129 51.2
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 1.2e-20 103.6 135 46.7
SEGI_30338 Sequoiadendron giganteum HOM05D006427 ORTHO05D008147 1.6e-20 103.2 148 42.6
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 2.1e-20 102.8 136 44.9
Solyc09g092110.4 Solanum lycopersicum HOM05D006427 ORTHO05D008147 8.1e-20 100.9 139 45.3
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 1.4e-19 100.1 136 47.1
PGSC0003DMG400026417 Solanum tuberosum HOM05D006427 ORTHO05D008147 1.8e-19 99.8 143 44.1
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 4.0e-19 98.6 122 50.8
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 5.2e-19 98.2 105 48.6
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 6.8e-19 97.8 139 44.6
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 6.8e-19 97.8 139 45.3
HanXRQChr16g0499601 Helianthus annuus HOM05D006427 ORTHO05D008147 2.0e-18 96.3 135 43.0
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 7.6e-18 94.4 143 46.2
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 9.9e-18 94.0 128 43.8
Atru.chr5.1933 Acer truncatum HOM05D006427 ORTHO05D008147 4.9e-17 91.7 77 55.8
Mapoly0029s0093 Marchantia polymorpha HOM05D006427 ORTHO05D008147 5.4e-16 88.2 144 38.9
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 9.3e-16 87.4 68 60.3
CBR_g20422 Chara braunii HOM05D006427 ORTHO05D008147 2.7e-15 85.9 140 38.6
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 6.0e-15 84.7 123 42.3
Aqoxy5G03161 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 1.6e-12 76.6 71 56.3
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 1.6e-12 76.6 122 43.4
Hund04203 Selenicereus undatus HOM05D006427 ORTHO05D008147 4.8e-12 75.1 73 54.8
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 1.1e-11 73.9 121 42.1
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.1e-11 73.9 119 42.9
Zm00001eb138400 Zea mays HOM05D000461 ORTHO05D008147 5.8e-10 68.2 83 39.8
Zm00001eb182180 Zea mays HOM05D006427 ORTHO05D008147 5.8e-10 68.2 80 41.2
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 2.9e-09 65.9 121 43.8
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 6.4e-09 64.7 69 52.2
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 7.1e-08 61.2 116 39.7
EL10Ac6g13399 Beta vulgaris HOM05D006427 ORTHO05D008147 6.0e-07 58.2 120 35.8
Zm00001eb390880 Zea mays HOM05D001191 ORTHO05D000979 1.7e-06 56.6 70 40.0


User provided reference genes

Program Settings