Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1636.3 811 100.0
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1610.1 811 98.4
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1590.1 812 97.5
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1573.1 811 96.5
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1563.5 812 96.3
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1536.9 811 94.3
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1484.2 818 90.6
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1474.1 818 90.1
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1470.7 818 89.9
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1468.4 818 89.7
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1467.6 818 90.2
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1330.5 795 84.3
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 0.0e+00 1275.4 686 91.5
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1210.3 775 75.5
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1209.9 747 77.4
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1209.1 775 75.4
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1207.2 795 73.8
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1207.2 811 73.5
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1204.1 811 73.1
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1203.0 775 75.1
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1200.7 800 72.9
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1198.7 811 72.9
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1198.7 758 75.6
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1196.8 786 73.4
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1196.8 810 72.3
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1192.6 807 72.9
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1191.4 801 72.7
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1189.5 776 73.3
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1188.3 801 72.4
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1187.9 773 75.0
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1187.6 810 72.1
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1185.6 812 72.4
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1185.2 803 72.5
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1181.0 745 76.4
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1180.6 747 75.8
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1179.5 768 73.3
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1179.1 789 71.9
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1178.7 812 71.6
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1176.8 789 72.9
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1172.9 817 71.5
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1172.1 752 74.1
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1171.8 768 73.8
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1171.8 801 71.0
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1170.2 790 72.4
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1169.8 761 74.0
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1169.5 747 74.8
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1169.1 798 71.1
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1167.5 754 73.9
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1166.8 769 73.0
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1165.2 770 72.6
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1162.9 786 71.9
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1162.9 804 71.6
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1162.5 749 73.6
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1161.0 749 73.4
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1161.0 799 70.5
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1160.6 751 74.2
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1160.2 805 71.3
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1158.7 818 70.0
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1158.7 752 73.8
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1157.9 821 71.1
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1156.7 778 72.6
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1155.6 795 69.9
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1154.0 804 70.9
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1153.7 742 73.6
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1149.8 769 72.8
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1149.4 800 69.2
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1148.7 780 70.1
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1140.6 811 68.7
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1140.6 810 67.8
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1136.7 798 69.8
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1135.9 746 72.4
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1135.9 824 69.3
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1131.3 804 70.1
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1124.4 783 70.9
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1122.8 816 69.2
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1118.2 805 68.2
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1112.1 805 68.9
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1099.7 764 69.4
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1083.6 761 69.0
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1083.6 768 70.1
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1082.4 820 64.4
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 2.3e-308 1062.0 699 72.5
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 5.7e-307 1057.4 664 76.1
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 4.8e-306 1054.3 844 63.4
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 4.1e-305 1051.2 685 73.6
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 6.9e-305 1050.4 695 72.1
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 4.5e-304 1047.7 687 73.5
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 5.0e-303 1044.3 809 65.3
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 7.2e-294 1013.8 758 66.8
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 3.0e-292 1008.4 738 66.8
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.1e-289 1000.0 888 59.3
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 2.7e-280 968.8 745 62.1
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 6.5e-279 964.1 740 60.9
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 4.0e-276 954.9 625 73.9
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 7.2e-270 934.1 748 59.0
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 2.5e-254 882.5 607 70.0
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 1.4e-249 866.7 635 65.2
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 3.5e-232 808.9 623 62.3
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 8.7e-231 804.3 688 60.3
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-213 745.7 677 53.3
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 1.9e-201 706.8 523 64.6
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 6.5e-170 602.1 792 42.9
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 5.4e-148 529.3 351 68.7
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 1.2e-136 491.5 595 47.4
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 8.6e-122 442.2 339 63.7
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 8.4e-93 345.9 264 63.6
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 6.1e-83 313.2 286 59.1
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 1.2e-75 288.9 223 63.7
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 7.4e-73 279.6 254 57.5
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 5.2e-58 230.3 150 72.7
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 3.5e-46 191.0 122 73.8
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 1.8e-39 168.7 123 66.7
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 2.0e-38 165.2 138 58.7
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 1.0e-37 162.9 134 62.7
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 1.0e-26 126.3 94 61.7
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 4.0e-26 124.4 157 43.9
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 1.0e-21 109.8 107 46.7
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 1.4e-18 99.4 114 53.5
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 3.7e-16 91.3 62 71.0
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 8.3e-16 90.1 56 78.6
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 6.6e-13 80.5 48 77.1
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 5.6e-12 77.4 43 74.4
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 2.0e-09 68.9 41 80.5
A03p30560 Brassica napus HOM05D000161 ORTHO05D042129 9.9e-09 66.6 44 79.5
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 3.7e-08 64.7 74 51.4
Medtr5g010890 Medicago truncatula HOM05D000161 ORTHO05D036718 3.5e-06 58.2 49 63.3
BraA03t12236Z Brassica rapa HOM05D000161 ORTHO05D042129 4.6e-06 57.8 38 78.9


User provided reference genes

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