Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 0.0e+00 1189.1 607 100.0
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 0.0e+00 1189.1 607 100.0
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 1.0e-292 1009.6 796 71.1
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 4.4e-288 994.2 789 70.1
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 1.5e-190 670.2 885 51.0
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 7.2e-190 667.9 882 49.9
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 6.1e-189 664.8 892 50.1
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.5e-187 660.2 880 50.0
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 3.7e-186 655.6 892 49.7
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 1.7e-183 646.7 869 50.3
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 2.5e-182 642.9 667 58.9
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 1.2e-179 634.0 878 49.2
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 3.2e-177 625.9 875 47.8
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 9.5e-174 614.4 872 47.4
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 3.1e-172 609.4 871 47.6
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 3.4e-171 605.9 872 47.2
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.4e-169 600.5 809 48.1
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 2.8e-165 586.3 880 46.1
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 1.2e-163 580.9 875 46.5
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 2.1e-152 543.5 860 43.8
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 4.6e-152 542.3 836 45.6
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 9.6e-150 534.6 860 44.3
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 2.0e-123 447.2 882 37.4
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 5.7e-102 375.9 907 33.5
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 8.2e-101 372.1 917 34.4
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 1.2e-99 368.2 880 34.4
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 2.6e-99 367.1 899 34.1
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 1.7e-98 364.4 908 33.0
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 5.0e-98 362.8 903 32.9
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 1.1e-97 361.7 886 34.1
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 1.9e-97 360.9 925 32.9
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 1.9e-97 360.9 896 33.0
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 4.2e-97 359.8 901 33.3
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 2.3e-95 354.0 885 32.8
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 1.1e-94 351.7 821 33.7
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.5e-94 351.3 872 33.5
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 2.6e-94 350.5 896 32.4
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.6e-94 350.5 863 34.4
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 2.6e-94 350.5 886 33.9
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 2.2e-93 347.4 910 33.2
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 2.8e-93 347.1 897 32.1
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 4.8e-93 346.3 871 32.3
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 4.8e-93 346.3 879 32.3
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 8.2e-93 345.5 873 33.1
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 1.1e-92 345.1 897 33.1
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 1.4e-92 344.7 898 33.0
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 3.1e-92 343.6 906 31.8
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 1.2e-91 341.7 887 32.8
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 1.2e-91 341.7 900 32.3
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 1.6e-91 341.3 907 32.1
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.6e-91 341.3 907 32.7
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 1.6e-91 341.3 902 31.8
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 1.6e-91 341.3 899 31.8
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 2.0e-91 340.9 899 32.5
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.6e-91 340.5 895 32.8
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 4.5e-91 339.7 890 32.6
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.3e-90 338.2 874 32.8
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 8.5e-90 335.5 897 32.2
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 8.5e-90 335.5 894 32.2
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.1e-89 335.1 873 32.6
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 9.4e-89 332.0 886 31.7
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 2.7e-88 330.5 901 33.3
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 2.7e-88 330.5 918 31.3
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 8.0e-88 328.9 858 33.1
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.0e-87 328.6 843 31.7
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 1.4e-87 328.2 879 32.0
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 1.4e-87 328.2 925 31.9
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 3.0e-87 327.0 891 31.6
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 3.0e-87 327.0 874 31.6
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 4.0e-87 326.6 828 33.0
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 1.5e-86 324.7 903 31.8
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 2.6e-86 323.9 880 31.8
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 3.4e-86 323.6 901 31.3
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.4e-86 323.6 820 33.5
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 4.4e-86 323.2 879 32.2
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.3e-85 321.6 864 32.9
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.2e-85 320.9 895 32.1
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 6.3e-85 319.3 880 31.4
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 8.3e-85 318.9 890 32.5
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 8.3e-85 318.9 892 32.0
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 5.4e-84 316.2 895 31.1
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 1.6e-83 314.7 864 31.2
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 2.7e-83 313.9 881 31.7
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 1.3e-82 311.6 869 30.6
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 3.8e-82 310.1 869 30.0
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 5.0e-82 309.7 864 31.5
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 8.5e-82 308.9 833 31.9
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 8.5e-82 308.9 873 31.8
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.9e-81 307.8 871 31.2
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 3.2e-81 307.0 863 30.9
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 5.5e-81 306.2 874 31.1
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 2.1e-80 304.3 839 31.2
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 6.1e-80 302.8 893 31.9
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 1.4e-79 301.6 865 30.6
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 4.0e-79 300.1 887 31.6
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 8.8e-79 298.9 860 31.0
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 1.5e-78 298.1 861 30.9
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 7.5e-78 295.8 890 31.7
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 1.7e-77 294.7 881 30.3
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 3.5e-75 287.0 856 31.5
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 4.5e-75 286.6 873 31.0
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.5e-73 281.6 843 30.6
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 5.5e-73 279.6 885 30.1
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 5.2e-71 273.1 862 29.8
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 6.8e-71 272.7 724 32.9
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 1.3e-69 268.5 861 29.8
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 1.0e-66 258.8 859 28.3
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 1.5e-65 255.0 868 29.0
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 3.3e-65 253.8 849 29.2
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 2.1e-64 251.1 725 31.4
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 2.6e-62 244.2 886 27.9
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 7.5e-62 242.7 723 30.3
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.7e-61 240.4 329 43.8
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 1.6e-59 235.0 859 27.8
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 2.0e-59 234.6 738 30.5
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 3.9e-58 230.3 626 31.9
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 7.3e-57 226.1 272 50.0
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 1.2e-54 218.8 355 39.4
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 9.8e-54 215.7 196 61.7
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 4.9e-53 213.4 350 39.7
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 7.1e-52 209.5 354 38.7
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 1.0e-50 205.7 335 41.2
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 1.7e-50 204.9 210 55.2
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 6.8e-47 193.0 781 27.9
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.1e-43 181.4 343 37.9
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 4.3e-41 173.7 169 57.4
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.4e-39 168.7 196 48.0
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.4e-38 164.1 181 49.2
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 7.6e-38 162.9 217 44.2
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 4.9e-37 160.2 158 57.6
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 1.6e-35 155.2 186 49.5
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.1e-33 149.1 313 36.4
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.1e-33 149.1 316 36.4
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 9.6e-33 146.0 241 40.7
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 1.4e-31 142.1 186 42.5
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 1.5e-30 138.7 154 60.4
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 9.9e-30 136.0 175 42.9
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 1.3e-29 135.6 181 44.8
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.3e-29 135.6 180 43.9
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 2.2e-29 134.8 168 54.8
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.9e-29 134.4 229 40.6
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 3.8e-29 134.0 158 44.3
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 7.1e-28 129.8 155 42.6
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 7.1e-28 129.8 155 42.6
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 8.1e-24 116.3 156 43.6
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.4e-23 115.5 314 33.4
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 4.0e-23 114.0 122 53.3
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.5e-22 112.1 189 42.9
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 4.5e-22 110.5 199 43.2
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 4.5e-22 110.5 223 41.3
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 8.4e-21 106.3 179 45.3
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 8.4e-21 106.3 212 35.8
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 4.2e-20 104.0 179 44.7
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 5.1e-18 97.1 131 43.5
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 1.1e-17 95.9 414 24.9
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 2.5e-17 94.7 238 36.6
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 2.5e-17 94.7 170 44.1
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 4.3e-17 94.0 172 44.2
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 9.6e-17 92.8 170 44.1
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 1.5e-14 85.5 156 37.2
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 7.1e-12 76.6 213 34.3
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 6.7e-10 70.1 92 52.2
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.5e-09 68.2 263 29.3
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 4.8e-08 63.9 57 61.4
C04p15890 Brassica napus HOM05D000022 ORTHO05D010270 2.4e-07 61.6 44 75.0
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 1.2e-06 59.3 174 27.6


User provided reference genes

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