Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p00860 Brassica napus HOM05D000492 ORTHO05D027584 8.8e-31 136.3 70 100.0
C09p00010 Brassica napus HOM05D000492 ORTHO05D027584 8.8e-31 136.3 70 100.0
BraA09t35676Z Brassica rapa HOM05D000492 ORTHO05D027584 8.8e-31 136.3 70 100.0
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 1.7e-21 105.5 68 83.8
BcaC06g36394 Brassica carinata HOM05D000492 ORTHO05D005571 1.7e-21 105.5 68 83.8
A07p02440 Brassica napus HOM05D000492 ORTHO05D005571 1.7e-21 105.5 68 82.4
BolC7t40860H Brassica oleracea HOM05D000492 ORTHO05D005571 1.7e-21 105.5 68 83.8
BcaB03g16616 Brassica carinata HOM05D000492 ORTHO05D005571 2.8e-21 104.8 68 80.9
BraA07t28040Z Brassica rapa HOM05D000492 ORTHO05D005571 4.8e-21 104.0 68 80.9
C07p04590 Brassica napus HOM05D000492 ORTHO05D005571 6.3e-21 103.6 68 82.4
BcaC01g05767 Brassica carinata HOM05D000492 ORTHO05D027584 4.1e-20 100.9 68 83.8
BcaB08g34802 Brassica carinata HOM05D000492 ORTHO05D005571 6.9e-20 100.1 68 75.0
A06p33320 Brassica napus HOM05D000492 ORTHO05D005571 1.0e-18 96.3 68 72.1
C03p59060 Brassica napus HOM05D000492 ORTHO05D005571 3.8e-18 94.4 68 70.6
BraA06t26261Z Brassica rapa HOM05D000492 ORTHO05D005571 3.8e-18 94.4 68 72.1
BolC3t18167H Brassica oleracea HOM05D000492 ORTHO05D005571 5.0e-18 94.0 68 70.6
AL3G51530 Arabidopsis lyrata HOM05D000492 ORTHO05D005571 6.1e-16 87.0 74 68.9
AT2G18260 Arabidopsis thaliana HOM05D000492 ORTHO05D005571 1.8e-15 85.5 74 67.6
Carub.0003s3244 Capsella rubella HOM05D000492 ORTHO05D005571 1.8e-15 85.5 74 67.6
Thhalv10022793m.g Eutrema salsugineum HOM05D000492 ORTHO05D005571 1.8e-15 85.5 74 67.6
Sp3g31680 Schrenkiella parvula HOM05D000492 ORTHO05D005571 3.0e-15 84.7 74 66.2
CARHR108860 Cardamine hirsuta HOM05D000492 ORTHO05D005571 6.7e-15 83.6 74 63.5
Aa31LG8G15750 Aethionema arabicum HOM05D000492 ORTHO05D005571 5.7e-14 80.5 70 58.6
THA.LOC104807460 Tarenaya hassleriana HOM05D000492 ORTHO05D005571 4.2e-09 64.3 77 48.1
ATR0568G018 Amborella trichopoda HOM05D000492 ORTHO05D005571 3.6e-08 61.2 76 46.1
Cpa.g.sc6.136 Carica papaya HOM05D000492 ORTHO05D005571 4.7e-08 60.8 77 42.9
Lsat_1_v5_gn_3_76040 Lactuca sativa HOM05D000492 ORTHO05D005571 8.0e-08 60.1 77 39.0
Eucgr.I02426 Eucalyptus grandis HOM05D000492 ORTHO05D005571 1.8e-07 58.9 77 36.4
Atru.chr3.606 Acer truncatum HOM05D000492 ORTHO05D005571 2.3e-07 58.5 75 41.3
Hma1.2p1_0789F.1_g218260 Hydrangea macrophylla HOM05D000492 ORTHO05D005571 3.0e-07 58.2 77 40.3
TAR625G0261 Trochodendron aralioides HOM05D000492 ORTHO05D005571 3.0e-07 58.2 77 39.0
Sabra07G0020100 Salix brachista HOM05D000492 ORTHO05D005571 4.0e-07 57.8 77 40.3
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 5.2e-07 57.4 77 42.9
DCAR_017301 Daucus carota HOM05D000492 ORTHO05D005571 6.7e-07 57.0 79 36.7
COL.COLO4_22051 Corchorus olitorius HOM05D000001 ORTHO05D000003 1.2e-06 56.2 77 41.6
Nitab4.5_0003526g0050 Nicotiana tabacum HOM05D000492 ORTHO05D005571 1.2e-06 56.2 71 39.4
Potri.005G121300 Populus trichocarpa HOM05D000492 ORTHO05D005571 1.5e-06 55.8 75 38.7
TAR381G0129 Trochodendron aralioides HOM05D000492 ORTHO05D005571 2.0e-06 55.5 77 36.4
Nitab4.5_0000178g0230 Nicotiana tabacum HOM05D000492 ORTHO05D005571 2.6e-06 55.1 79 36.7
Potri.007G023100 Populus trichocarpa HOM05D000492 ORTHO05D005571 2.6e-06 55.1 77 37.7
TPR.G2376 Trifolium pratense HOM05D000492 ORTHO05D005571 2.6e-06 55.1 77 36.4
Ca_24862_v3 Cicer arietinum L. HOM05D000492 ORTHO05D005571 3.3e-06 54.7 77 36.4
Ciclev10027293m.g Citrus clementina HOM05D000492 ORTHO05D005571 3.3e-06 54.7 77 35.1
Dinv13510 Davidia involucrata HOM05D000492 ORTHO05D005571 3.3e-06 54.7 79 36.7
Duzib187G0814 Durio zibethinus HOM05D000492 ORTHO05D005571 3.3e-06 54.7 77 42.9
Manes.01G136800 Manihot esculenta HOM05D000492 ORTHO05D005571 3.3e-06 54.7 75 40.0
Medtr5g020670 Medicago truncatula HOM05D000492 ORTHO05D005571 3.3e-06 54.7 77 36.4
unitig_22.g6862 Utricularia gibba HOM05D000492 ORTHO05D005571 3.3e-06 54.7 73 38.4
AUR62006025 Chenopodium quinoa HOM05D000492 ORTHO05D000499 4.4e-06 54.3 74 40.5
Dinv23507 Davidia involucrata HOM05D000492 ORTHO05D005571 4.4e-06 54.3 74 40.5
Nitab4.5_0000308g0280 Nicotiana tabacum HOM05D000492 ORTHO05D005571 4.4e-06 54.3 71 45.1
Cc02_g17400 Coffea canephora HOM05D000492 ORTHO05D005571 5.7e-06 53.9 74 45.9
Hma1.2p1_0064F.1_g034590 Hydrangea macrophylla HOM05D000492 ORTHO05D000499 5.7e-06 53.9 72 37.5
Peaxi162Scf00016g00064 Petunia axillaris HOM05D000492 ORTHO05D005571 5.7e-06 53.9 71 39.4
Psat2g158400 Pisum sativum HOM05D000492 ORTHO05D005571 5.7e-06 53.9 77 33.8
Solyc01g109750.2 Solanum lycopersicum HOM05D000492 ORTHO05D005571 5.7e-06 53.9 69 46.4
Sopen01g051940 Solanum pennellii HOM05D000492 ORTHO05D005571 5.7e-06 53.9 69 46.4
ATR0661G536 Amborella trichopoda HOM05D000492 ORTHO05D067845 7.5e-06 53.5 73 41.1
CSS0039477 Camellia sinensis var. sinensis HOM05D000492 ORTHO05D000499 7.5e-06 53.5 75 37.3
unitig_699.g19879 Utricularia gibba HOM05D000492 ORTHO05D005571 7.5e-06 53.5 73 35.6
BcaC07g38401 Brassica carinata HOM05D000492 ORTHO05D000499 9.7e-06 53.1 71 39.4
C08p11570 Brassica napus HOM05D000492 ORTHO05D000499 9.7e-06 53.1 71 39.4
COL.COLO4_25950 Corchorus olitorius HOM05D000492 ORTHO05D005571 9.7e-06 53.1 71 39.4
Migut.H00963 Erythranthe guttata HOM05D000492 ORTHO05D005571 9.7e-06 53.1 74 36.5
Nitab4.5_0006115g0010 Nicotiana tabacum HOM05D000492 ORTHO05D005571 9.7e-06 53.1 79 35.4
PGSC0003DMG400000733 Solanum tuberosum HOM05D000492 ORTHO05D005571 9.7e-06 53.1 74 36.5


User provided reference genes

Program Settings