Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p53810 Brassica napus HOM05D013509 ORTHO05D016099 9.1e-122 440.3 224 100.0
BcaC07g42415 Brassica carinata HOM05D013509 ORTHO05D016099 1.1e-119 433.3 224 98.7
BcaC02g11996 Brassica carinata HOM05D013509 ORTHO05D016099 5.7e-116 421.0 222 96.8
C04p34750 Brassica napus HOM05D013509 ORTHO05D016099 6.1e-110 401.0 224 92.0
BolC4t22499H Brassica oleracea HOM05D013509 ORTHO05D016099 9.3e-42 174.5 90 94.4
BolC4t27313H Brassica oleracea HOM05D013509 ORTHO05D016099 2.1e-41 173.3 90 93.3
BolC8t52895H Brassica oleracea HOM05D013509 ORTHO05D016099 2.7e-41 172.9 90 93.3
BolC4t25029H Brassica oleracea HOM05D013509 ORTHO05D016099 3.9e-40 169.1 90 91.1
BolC5t32927H Brassica oleracea HOM05D013509 ORTHO05D016099 4.3e-39 165.6 88 89.8
C09p48380 Brassica napus HOM05D013509 ORTHO05D016099 6.2e-38 161.8 95 90.5
BcaC03g13749 Brassica carinata HOM05D013509 ORTHO05D016099 1.3e-32 144.1 128 68.0
A10p20890 Brassica napus HOM05D000404 ORTHO05D005791 3.7e-22 109.4 86 67.4
A03p09020 Brassica napus HOM05D000404 ORTHO05D005791 8.2e-22 108.2 86 66.3
BraA10t44154Z Brassica rapa HOM05D000404 ORTHO05D005791 1.4e-21 107.5 86 66.3
BraA03t10226Z Brassica rapa HOM05D000404 ORTHO05D005791 1.8e-21 107.1 86 65.1
CARHR194330 Cardamine hirsuta HOM05D000404 ORTHO05D005791 1.8e-21 107.1 80 68.8
Sp6g25670 Schrenkiella parvula HOM05D000404 ORTHO05D005791 4.1e-21 105.9 80 68.8
BcaB01g05257 Brassica carinata HOM05D000404 ORTHO05D005791 6.9e-21 105.1 86 64.0
BcaC04g18656 Brassica carinata HOM05D000404 ORTHO05D005791 6.9e-21 105.1 86 66.3
C03p10500 Brassica napus HOM05D000404 ORTHO05D005791 6.9e-21 105.1 86 64.0
C09p57790 Brassica napus HOM05D000404 ORTHO05D005791 6.9e-21 105.1 86 66.3
BolC3t13532H Brassica oleracea HOM05D000404 ORTHO05D005791 6.9e-21 105.1 86 64.0
BolC9t58648H Brassica oleracea HOM05D000404 ORTHO05D005791 6.9e-21 105.1 86 66.3
Thhalv10013215m.g Eutrema salsugineum HOM05D000404 ORTHO05D005791 1.5e-20 104.0 103 54.4
Carub.0006s1697 Capsella rubella HOM05D000404 ORTHO05D005791 2.0e-20 103.6 80 66.2
AT5G18670 Arabidopsis thaliana HOM05D000404 ORTHO05D005791 2.6e-20 103.2 80 67.5
AL6G29950 Arabidopsis lyrata HOM05D000404 ORTHO05D005791 1.0e-19 101.3 103 54.4
THA.LOC104827120 Tarenaya hassleriana HOM05D000404 ORTHO05D005791 1.7e-19 100.5 85 63.5
Aa31LG11G10950 Aethionema arabicum HOM05D000404 ORTHO05D005791 2.9e-19 99.8 84 59.5
Ca_00575_v3 Cicer arietinum L. HOM05D000404 ORTHO05D005791 6.1e-17 92.0 83 56.6
VMungo0540G0329 Vigna mungo HOM05D000404 ORTHO05D005791 1.3e-16 90.9 83 51.8
Ciclev10004689m.g Citrus clementina HOM05D000404 ORTHO05D005791 3.9e-16 89.4 86 55.8
Medtr2g020240 Medicago truncatula HOM05D000404 ORTHO05D005791 3.9e-16 89.4 80 53.8
FAN07G0337 Fragaria x ananassa HOM05D000404 ORTHO05D005791 4.3e-15 85.9 86 52.3
Psat1g187120 Pisum sativum HOM05D000404 ORTHO05D005791 4.3e-15 85.9 85 52.9
FAN17G2506 Fragaria x ananassa HOM05D000404 ORTHO05D005791 5.7e-15 85.5 86 53.5
Haze_01059 Corylus avellana HOM05D000404 ORTHO05D005791 7.4e-15 85.1 85 52.9
FvH4_4g17180 Fragaria vesca HOM05D000404 ORTHO05D005791 7.4e-15 85.1 86 52.3
FAN12G2473 Fragaria x ananassa HOM05D000404 ORTHO05D005791 7.4e-15 85.1 86 52.3
FAN12G3224 Fragaria x ananassa HOM05D000404 ORTHO05D005791 7.4e-15 85.1 86 52.3
FAN22G2151 Fragaria x ananassa HOM05D000404 ORTHO05D005791 7.4e-15 85.1 86 52.3
LjContig00389g0014251 Lotus japonicus HOM05D000404 ORTHO05D005791 1.6e-14 84.0 117 38.5
Hund24912 Selenicereus undatus HOM05D000404 ORTHO05D005791 1.6e-14 84.0 99 48.5
AL3G17330 Arabidopsis lyrata HOM05D000404 ORTHO05D005791 2.2e-14 83.6 75 57.3
Atru.chr4.2752 Acer truncatum HOM05D000404 ORTHO05D005791 3.7e-14 82.8 86 51.2
Gohir.A10G101605 Gossypium hirsutum HOM05D000404 ORTHO05D005791 4.8e-14 82.4 83 54.2
RcHm_v2.0_Chr4g0420971 Rosa chinensis HOM05D000404 ORTHO05D005791 4.8e-14 82.4 86 51.2
Lalb_Chr20g0118131 Lupinus albus HOM05D000404 ORTHO05D005791 8.2e-14 81.6 83 47.0
Hund24913 Selenicereus undatus HOM05D000404 ORTHO05D005791 8.2e-14 81.6 99 47.5
CiPaw.01G153400 Carya illinoinensis HOM05D000404 ORTHO05D005791 1.1e-13 81.3 86 50.0
Prupe.1G142400 Prunus persica HOM05D000404 ORTHO05D005791 1.1e-13 81.3 86 48.8
PGR015G0006 Punica granatum HOM05D000404 ORTHO05D005791 1.1e-13 81.3 87 50.6
PGR104G0002 Punica granatum HOM05D000404 ORTHO05D005791 1.1e-13 81.3 87 50.6
QL06p007345 Quercus lobata HOM05D000404 ORTHO05D005791 1.1e-13 81.3 86 50.0
Gohir.D10G166400 Gossypium hirsutum HOM05D000404 ORTHO05D005791 1.4e-13 80.9 83 53.0
Phvul.006G161200 Phaseolus vulgaris HOM05D000404 ORTHO05D005791 1.8e-13 80.5 83 45.8
Thecc.04G277400 Theobroma cacao HOM05D000404 ORTHO05D005791 1.8e-13 80.5 88 48.9
Cfa015494 Carpinus fangiana HOM05D000404 ORTHO05D005791 2.4e-13 80.1 88 48.9
COL.COLO4_13931 Corchorus olitorius HOM05D000404 ORTHO05D005791 2.4e-13 80.1 81 53.1
Glyma.13G215000 Glycine max HOM05D000404 ORTHO05D005791 2.4e-13 80.1 83 49.4
Gorai.011G185700 Gossypium raimondii HOM05D000404 ORTHO05D005791 2.4e-13 80.1 83 53.0
Manes.03G191000 Manihot esculenta HOM05D000404 ORTHO05D005791 2.4e-13 80.1 86 51.2
Dinv38327 Davidia involucrata HOM05D000404 ORTHO05D005791 3.1e-13 79.7 85 52.9
Eucgr.H03767 Eucalyptus grandis HOM05D000404 ORTHO05D005791 3.1e-13 79.7 86 50.0
vmacro15257 Vaccinium macrocarpon HOM05D000404 ORTHO05D005791 3.1e-13 79.7 85 51.8
vmacro22596 Vaccinium macrocarpon HOM05D000404 ORTHO05D005791 3.1e-13 79.7 85 51.8
Cfa015495 Carpinus fangiana HOM05D000404 ORTHO05D005791 4.1e-13 79.3 85 49.4
arahy.Tifrunner.gnm1.ann1.I36EUT Arachis hypogaea HOM05D000404 ORTHO05D005791 5.3e-13 79.0 86 48.8
Hma1.2p1_0823F.1_g224600 Hydrangea macrophylla HOM05D000404 ORTHO05D005791 5.3e-13 79.0 84 47.6
arahy.Tifrunner.gnm1.ann1.60DV95 Arachis hypogaea HOM05D000404 ORTHO05D005791 6.9e-13 78.6 86 48.8
Oeu062885.1 Olea europaea HOM05D000404 ORTHO05D005791 6.9e-13 78.6 83 48.2
Lalb_Chr18g0055731 Lupinus albus HOM05D000404 ORTHO05D005791 9.0e-13 78.2 93 41.9
Sabra08G0157500 Salix brachista HOM05D000404 ORTHO05D005791 9.0e-13 78.2 83 50.6
Cpa.g.sc16.112 Carica papaya HOM05D000404 ORTHO05D005791 1.2e-12 77.8 80 47.5
Dinv44427 Davidia involucrata HOM05D000404 ORTHO05D005791 1.2e-12 77.8 86 48.8
Duzib151G0511 Durio zibethinus HOM05D000404 ORTHO05D005791 1.5e-12 77.4 87 49.4
Potri.008G204200 Populus trichocarpa HOM05D000404 ORTHO05D005791 1.5e-12 77.4 83 50.6
DCAR_024613 Daucus carota HOM05D000404 ORTHO05D005791 2.0e-12 77.0 81 51.9
Duzib052G0769 Durio zibethinus HOM05D000404 ORTHO05D005791 2.0e-12 77.0 88 46.6
Glyma.15G098100 Glycine max HOM05D000404 ORTHO05D005791 2.0e-12 77.0 83 47.0
HanXRQChr03g0080071 Helianthus annuus HOM05D000404 ORTHO05D005791 2.6e-12 76.6 79 49.4
Sc19g0004940 Simmondsia chinensis HOM05D000404 ORTHO05D005791 2.6e-12 76.6 86 50.0
TWI73G0089 Tripterygium wilfordii HOM05D000404 ORTHO05D005791 2.6e-12 76.6 112 41.1
Lsat_1_v5_gn_5_50601 Lactuca sativa HOM05D000404 ORTHO05D005791 3.4e-12 76.3 83 48.2
Lj6A669G30 Lonicera japonica HOM05D000404 ORTHO05D005791 3.4e-12 76.3 112 40.2
Nitab4.5_0000191g0030 Nicotiana tabacum HOM05D000404 ORTHO05D005791 3.4e-12 76.3 109 40.4
Nitab4.5_0000784g0030 Nicotiana tabacum HOM05D000404 ORTHO05D005791 3.4e-12 76.3 109 40.4
Sc13g0003610 Simmondsia chinensis HOM05D000404 ORTHO05D005791 3.4e-12 76.3 86 48.8
Nn3g21297 Nelumbo nucifera HOM05D000404 ORTHO05D005791 4.5e-12 75.9 86 47.7
CAN.G223.10 Capsicum annuum HOM05D000404 ORTHO05D005791 5.9e-12 75.5 83 50.6
MD16G1175300 Malus domestica HOM05D000404 ORTHO05D005791 5.9e-12 75.5 86 47.7
MD13G1174000 Malus domestica HOM05D000404 ORTHO05D005791 1.0e-11 74.7 86 46.5
EL10Ac3g06555 Beta vulgaris HOM05D000404 ORTHO05D005791 1.3e-11 74.3 99 43.4
Lsat_1_v5_gn_5_50720 Lactuca sativa HOM05D000404 ORTHO05D005791 1.7e-11 73.9 83 47.0
Oeu007862.1 Olea europaea HOM05D000404 ORTHO05D005791 1.7e-11 73.9 97 42.3
TAR365G0265 Trochodendron aralioides HOM05D000404 ORTHO05D005791 1.7e-11 73.9 112 38.4
PGSC0003DMG400010664 Solanum tuberosum HOM05D000404 ORTHO05D005791 2.2e-11 73.6 97 41.2
ECA240G3803 Erigeron canadensis HOM05D000084 ORTHO05D000363 2.9e-11 73.2 84 46.4
Gohir.D02G052000 Gossypium hirsutum HOM05D000404 ORTHO05D005791 3.8e-11 72.8 86 46.5
Gorai.005G057300 Gossypium raimondii HOM05D000404 ORTHO05D005791 3.8e-11 72.8 86 46.5
Actinidia00051 Actinidia chinensis HOM05D000404 ORTHO05D005791 5.0e-11 72.4 94 42.6
CANSAT78G2211 Cannabis sativa HOM05D000404 ORTHO05D005791 5.0e-11 72.4 86 48.8
ClCG06G005390 Citrullus lanatus HOM05D000404 ORTHO05D005791 6.5e-11 72.0 86 45.3
PSO210G4605 Papaver somniferum HOM05D000404 ORTHO05D005791 6.5e-11 72.0 86 47.7
Peaxi162Scf00386g00222 Petunia axillaris HOM05D000404 ORTHO05D005791 6.5e-11 72.0 97 40.2
Ah.13g074440 Amaranthus hybridus HOM05D000404 ORTHO05D005791 8.5e-11 71.6 99 42.4
MSTRG.10053 Avicennia marina HOM05D000404 ORTHO05D005791 8.5e-11 71.6 97 42.3
Nn4g26029 Nelumbo nucifera HOM05D000404 ORTHO05D005791 8.5e-11 71.6 89 46.1
PSO170G0635 Papaver somniferum HOM05D000404 ORTHO05D005791 8.5e-11 71.6 86 47.7
unitig_32.g11750 Utricularia gibba HOM05D000404 ORTHO05D005791 1.4e-10 70.9 84 46.4
SalBow2G2518 Salvia bowleyana HOM05D000404 ORTHO05D005791 1.9e-10 70.5 88 42.0
unitig_748.g8576 Utricularia gibba HOM05D000404 ORTHO05D005791 1.9e-10 70.5 97 41.2
Sopen01g029610 Solanum pennellii HOM05D000404 ORTHO05D005791 2.5e-10 70.1 97 40.2
Solyc01g067660.3 Solanum lycopersicum HOM05D000404 ORTHO05D005791 3.2e-10 69.7 97 40.2
GSVIVG01017808001 Vitis vinifera HOM05D000404 ORTHO05D005791 3.2e-10 69.7 84 42.9
Sed0000536 Sechium edule HOM05D000404 ORTHO05D005791 4.2e-10 69.3 86 44.2
TPR.G1496 Trifolium pratense HOM05D000404 ORTHO05D005791 4.2e-10 69.3 82 40.2
SalBow5G1198 Salvia bowleyana HOM05D000404 ORTHO05D005791 7.2e-10 68.6 97 40.2
SalBow5G2195 Salvia bowleyana HOM05D000404 ORTHO05D005791 7.2e-10 68.6 97 40.2
CDE12G0716 Ceratophyllum demersum HOM05D000404 ORTHO05D005791 1.2e-09 67.8 109 36.7
Aqoxy2G03092 Aquilegia oxysepala HOM05D000404 ORTHO05D005791 1.6e-09 67.4 99 42.4
CDE01G0466 Ceratophyllum demersum HOM05D000404 ORTHO05D005791 1.6e-09 67.4 109 37.6
Gohir.A02G046300 Gossypium hirsutum HOM05D000404 ORTHO05D005791 1.6e-09 67.4 86 44.2
HPP92_013694 Vanilla planifolia HOM05D000404 ORTHO05D005791 1.6e-09 67.4 104 39.4
MELO3C021362.2 Cucumis melo HOM05D000404 ORTHO05D005791 2.1e-09 67.0 81 45.7
AUR62041243 Chenopodium quinoa HOM05D000404 ORTHO05D005791 2.7e-09 66.6 90 42.2
CsaV3_6G005730 Cucumis sativus L. HOM05D000404 ORTHO05D005791 2.7e-09 66.6 81 45.7
Os03g0351300 Oryza sativa ssp. japonica HOM05D000404 ORTHO05D005791 4.6e-09 65.9 84 42.9
Zm00001eb394710 Zea mays HOM05D000404 ORTHO05D005791 4.6e-09 65.9 85 41.2
Zm00001eb016880 Zea mays HOM05D000404 ORTHO05D005791 7.9e-09 65.1 97 40.2
Zm00001eb016920 Zea mays HOM05D000404 ORTHO05D005791 7.9e-09 65.1 97 40.2
MBI18_g29028_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D005791 1.0e-08 64.7 84 40.5
AUR62014139 Chenopodium quinoa HOM05D000404 ORTHO05D005791 1.4e-08 64.3 90 41.1
BcaC06g34007 Brassica carinata HOM05D000404 ORTHO05D090352 2.3e-08 63.5 165 35.2
MBI18_g42097_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D005791 2.3e-08 63.5 84 39.3
CSS0006318 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D005791 3.9e-08 62.8 80 46.2
CSS0040095 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D005791 3.9e-08 62.8 80 46.2
Cc03_g02380 Coffea canephora HOM05D000404 ORTHO05D005791 6.7e-08 62.0 84 40.5
Oeu054289.1 Olea europaea HOM05D000404 ORTHO05D001765 2.6e-07 60.1 75 42.7
ATR0706G226 Amborella trichopoda HOM05D000404 ORTHO05D005791 3.3e-07 59.7 89 38.2
Sp2g10240 Schrenkiella parvula HOM05D000404 ORTHO05D002003 9.7e-07 58.2 95 36.8
SMO139G0111 Selaginella moellendorffii HOM05D000404 ORTHO05D001765 1.3e-06 57.8 74 41.9
CARHR176840 Cardamine hirsuta HOM05D000404 ORTHO05D002003 1.7e-06 57.4 95 37.9
CDE05G3429 Ceratophyllum demersum HOM05D000404 ORTHO05D005791 1.7e-06 57.4 85 42.4
BcaB07g30462 Brassica carinata HOM05D000404 ORTHO05D002003 2.2e-06 57.0 95 35.8
A02p29020 Brassica napus HOM05D000404 ORTHO05D002003 2.2e-06 57.0 95 35.8
CDE11G0917 Ceratophyllum demersum HOM05D000404 ORTHO05D001765 2.2e-06 57.0 77 37.7
Gohir.A11G029500 Gossypium hirsutum HOM05D000404 ORTHO05D001765 2.2e-06 57.0 76 39.5
Thhalv10001222m.g Eutrema salsugineum HOM05D000404 ORTHO05D002003 2.8e-06 56.6 95 35.8
Migut.A00486 Erythranthe guttata HOM05D000404 ORTHO05D002003 3.7e-06 56.2 77 40.3
Manes.05G034900 Manihot esculenta HOM05D000404 ORTHO05D002003 3.7e-06 56.2 65 44.6
BcaC03g16739 Brassica carinata HOM05D000404 ORTHO05D002003 4.8e-06 55.8 95 34.7
BolC2t10668H Brassica oleracea HOM05D000404 ORTHO05D002003 4.8e-06 55.8 95 34.7
Carub.0008s0285 Capsella rubella HOM05D000404 ORTHO05D002003 4.8e-06 55.8 79 39.2
C02p46120 Brassica napus HOM05D000404 ORTHO05D002003 6.3e-06 55.5 95 34.7
BraA02t07934Z Brassica rapa HOM05D000404 ORTHO05D002003 6.3e-06 55.5 95 34.7
Glyma.09G260100 Glycine max HOM05D000404 ORTHO05D002003 6.3e-06 55.5 65 44.6
Phvul.008G065600 Phaseolus vulgaris HOM05D000404 ORTHO05D002003 6.3e-06 55.5 65 44.6
vmacro00377 Vaccinium macrocarpon HOM05D000404 ORTHO05D001765 6.3e-06 55.5 74 37.8
VMungo1383G0478 Vigna mungo HOM05D000404 ORTHO05D002003 6.3e-06 55.5 65 44.6
ATR0568G143 Amborella trichopoda HOM05D000404 ORTHO05D002003 8.2e-06 55.1 99 34.3
AagrBONN_evm.TU.Sc2ySwM_344.3169 Anthoceros agrestis HOM05D000404 ORTHO05D001765 8.2e-06 55.1 76 36.8
Glyma.18G232400 Glycine max HOM05D000404 ORTHO05D002003 8.2e-06 55.1 65 44.6
Os07g0667100 Oryza sativa ssp. japonica HOM05D000404 ORTHO05D005791 8.2e-06 55.1 97 32.0
Peaxi162Scf00045g01116 Petunia axillaris HOM05D000404 ORTHO05D002003 8.2e-06 55.1 95 33.7
Pp3c5_22190 Physcomitrium patens HOM05D000404 ORTHO05D001765 8.2e-06 55.1 74 36.5
Pp3c6_10130 Physcomitrium patens HOM05D000404 ORTHO05D001765 8.2e-06 55.1 76 34.2
Solyc08g005780.4 Solanum lycopersicum HOM05D000404 ORTHO05D002003 8.2e-06 55.1 95 33.7
Zm00001eb023950 Zea mays HOM05D000404 ORTHO05D001765 8.2e-06 55.1 77 36.4


User provided reference genes

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