Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41995 Brassica carinata HOM05D001415 ORTHO05D001075 4.7e-23 111.3 110 100.0
C08p50550 Brassica napus HOM05D001415 ORTHO05D001075 4.7e-23 111.3 110 100.0
BolC8t52582H Brassica oleracea HOM05D001415 ORTHO05D001075 4.7e-23 111.3 110 100.0
BcaC07g42471 Brassica carinata HOM05D008503 ORTHO05D001075 8.9e-22 107.1 110 91.8
A09p66390 Brassica napus HOM05D008503 ORTHO05D001075 9.2e-19 97.1 110 70.0
BraA09t41975Z Brassica rapa HOM05D008503 ORTHO05D001075 9.2e-19 97.1 110 70.0
A10p06020 Brassica napus HOM05D001415 ORTHO05D001075 1.5e-16 89.7 110 91.8
BraA10t42864Z Brassica rapa HOM05D001415 ORTHO05D001075 1.5e-16 89.7 110 91.8
Thhalv10009168m.g Eutrema salsugineum HOM05D008503 ORTHO05D001075 1.8e-14 82.8 110 80.0
BcaB06g28285 Brassica carinata HOM05D001415 ORTHO05D001075 2.0e-13 79.3 113 61.9
BcaB06g28286 Brassica carinata HOM05D001415 ORTHO05D001075 2.0e-13 79.3 113 61.9
AT1G07490 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 5.8e-13 77.8 110 67.3
A04p22250 Brassica napus HOM05D008503 ORTHO05D001075 7.6e-13 77.4 113 54.9
BraA04t17777Z Brassica rapa HOM05D008503 ORTHO05D001075 7.6e-13 77.4 113 54.9
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 9.9e-13 77.0 107 55.1
Carub.0001s0681 Capsella rubella HOM05D008503 ORTHO05D001075 1.3e-12 76.6 111 71.2
Thecc.09G317800 Theobroma cacao HOM05D001415 ORTHO05D001075 1.3e-12 76.6 107 64.5
Thhalv10017949m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 1.7e-12 76.3 118 64.4
THA.LOC104826316 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 2.9e-12 75.5 111 60.4
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.8e-12 75.1 109 62.4
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.8e-12 75.1 109 62.4
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.8e-12 75.1 109 62.4
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 8.4e-12 73.9 109 55.0
Carub.0004s1014 Capsella rubella HOM05D008503 ORTHO05D001075 1.1e-11 73.6 114 67.5
Sp1g06220 Schrenkiella parvula HOM05D008503 ORTHO05D001075 1.4e-11 73.2 111 83.8
Duzib150G0909 Durio zibethinus HOM05D001415 ORTHO05D001075 1.9e-11 72.8 107 63.6
A08p35630 Brassica napus HOM05D008503 ORTHO05D001075 2.4e-11 72.4 110 68.2
C08p03100 Brassica napus HOM05D008503 ORTHO05D001075 2.4e-11 72.4 110 68.2
BraA08t35469Z Brassica rapa HOM05D008503 ORTHO05D001075 2.4e-11 72.4 110 68.2
Duzib170G0931 Durio zibethinus HOM05D001415 ORTHO05D001075 4.2e-11 71.6 107 61.7
RcHm_v2.0_Chr5g0065921 Rosa chinensis HOM05D001415 ORTHO05D001075 9.3e-11 70.5 109 62.4
Phvul.011G062700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 1.6e-10 69.7 107 65.4
Potri.001G242800 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.1e-10 69.3 107 62.6
AT2G29125 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 2.7e-10 68.9 116 66.4
Sp4g11940 Schrenkiella parvula HOM05D008503 ORTHO05D001075 3.5e-10 68.6 118 69.5
Atru.chr3.3969 Acer truncatum HOM05D001415 ORTHO05D001075 7.8e-10 67.4 109 56.0
AL4G23680 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 7.8e-10 67.4 116 65.5
CARHR122420 Cardamine hirsuta HOM05D008503 ORTHO05D001075 7.8e-10 67.4 30 96.7
Eucgr.B02318 Eucalyptus grandis HOM05D008503 ORTHO05D001075 7.8e-10 67.4 31 90.3
MELO3C025900.2 Cucumis melo HOM05D001415 ORTHO05D001075 1.3e-09 66.6 111 54.1
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.3e-09 66.6 107 60.7
Medtr4g064520 Medicago truncatula HOM05D001415 ORTHO05D001075 1.7e-09 66.2 107 58.9
BcaC02g08109 Brassica carinata HOM05D001415 ORTHO05D001075 3.0e-09 65.5 113 56.6
PGR102G0519 Punica granatum HOM05D001415 ORTHO05D001075 3.0e-09 65.5 30 90.0
Sed0008013 Sechium edule HOM05D001415 ORTHO05D001075 3.0e-09 65.5 107 41.1
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 3.9e-09 65.1 107 57.0
Manes.02G130200 Manihot esculenta HOM05D001415 ORTHO05D001075 3.9e-09 65.1 107 52.3
THA.LOC104800681 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 3.9e-09 65.1 107 70.1
MELO3C020615.2 Cucumis melo HOM05D001415 ORTHO05D001075 5.1e-09 64.7 108 56.5
Manes.01G170700 Manihot esculenta HOM05D001415 ORTHO05D001075 5.1e-09 64.7 107 57.9
ClCG02G019980 Citrullus lanatus HOM05D001415 ORTHO05D001075 6.6e-09 64.3 107 82.2
ClCG03G001360 Citrullus lanatus HOM05D001415 ORTHO05D001075 8.7e-09 63.9 107 61.7
CsaV3_1G034460 Cucumis sativus L. HOM05D001415 ORTHO05D001075 8.7e-09 63.9 107 65.4
Glyma.12G061000 Glycine max HOM05D008503 ORTHO05D001075 1.1e-08 63.5 107 49.5
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.1e-08 63.5 107 40.2
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.5e-08 63.2 107 42.1
Lj3g0014912 Lotus japonicus HOM05D001415 ORTHO05D001075 1.9e-08 62.8 111 47.7
TPR.G23565 Trifolium pratense HOM05D001415 ORTHO05D001075 1.9e-08 62.8 107 46.7
CANSAT54G2158 Cannabis sativa HOM05D001415 ORTHO05D001075 2.5e-08 62.4 30 90.0
Cfa011527 Carpinus fangiana HOM05D001415 ORTHO05D001075 2.5e-08 62.4 30 90.0
CiPaw.14G067100 Carya illinoinensis HOM05D001415 ORTHO05D001075 2.5e-08 62.4 107 72.9
Haze_24132 Corylus avellana HOM05D001415 ORTHO05D001075 2.5e-08 62.4 30 90.0
THA.LOC104815782 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 2.5e-08 62.4 99 43.4
Cpa.g.sc81.113 Carica papaya HOM05D001415 ORTHO05D001075 3.3e-08 62.0 114 50.0
Lalb_Chr03g0026501 Lupinus albus HOM05D001415 ORTHO05D001075 3.3e-08 62.0 107 69.2
Sed0002507 Sechium edule HOM05D001415 ORTHO05D001075 3.3e-08 62.0 29 93.1
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 3.3e-08 62.0 29 93.1
COL.COLO4_18559 Corchorus olitorius HOM05D001415 ORTHO05D001075 4.3e-08 61.6 110 57.3
FvH4_3g04210 Fragaria vesca HOM05D008503 ORTHO05D001075 4.3e-08 61.6 32 84.4
Prupe.6G072200 Prunus persica HOM05D001415 ORTHO05D001075 4.3e-08 61.6 107 54.2
CARHR007270 Cardamine hirsuta HOM05D008503 ORTHO05D001075 9.6e-08 60.5 97 46.4
Medtr2g097570 Medicago truncatula HOM05D001415 ORTHO05D001075 1.3e-07 60.1 30 83.3
TPR.G5599 Trifolium pratense HOM05D001415 ORTHO05D001075 1.3e-07 60.1 30 83.3
CiPaw.13G091000 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.6e-07 59.7 30 86.7
Gohir.A13G227216 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.6e-07 59.7 30 83.3
Gohir.D13G232500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.6e-07 59.7 30 83.3
Gorai.013G263300 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.6e-07 59.7 30 83.3
Glyma.18G076400 Glycine max HOM05D001415 ORTHO05D001075 2.1e-07 59.3 29 86.2
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea HOM05D001415 ORTHO05D001075 2.8e-07 58.9 30 80.0
Glyma.13G338000 Glycine max HOM05D001415 ORTHO05D001075 4.8e-07 58.2 27 88.9
Glyma.15G036400 Glycine max HOM05D001415 ORTHO05D001075 4.8e-07 58.2 27 88.9
arahy.Tifrunner.gnm1.ann1.Z87QWF Arachis hypogaea HOM05D008503 ORTHO05D001075 8.1e-07 57.4 110 46.4
Lalb_Chr01g0003531 Lupinus albus HOM05D008503 ORTHO05D001075 8.1e-07 57.4 107 71.0
Phvul.L007243 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 8.1e-07 57.4 26 88.5
CAN.G141.1 Capsicum annuum HOM05D018369 ORTHO05D001075 1.4e-06 56.6 108 54.6
Solyc06g005610.1 Solanum lycopersicum HOM05D018369 ORTHO05D001075 1.4e-06 56.6 108 59.3
Sopen06g001570 Solanum pennellii HOM05D018369 ORTHO05D001075 1.4e-06 56.6 108 59.3
PGSC0003DMG400002141 Solanum tuberosum HOM05D018369 ORTHO05D001075 1.4e-06 56.6 108 59.3
Hma1.2p1_0757F.1_g213305 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 2.4e-06 55.8 30 73.3
Hma1.2p1_0757F.1_g213310 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 2.4e-06 55.8 30 73.3
MD03G1087500 Malus domestica HOM05D001415 ORTHO05D001075 3.1e-06 55.5 107 50.5
Lj3g0013501 Lotus japonicus HOM05D008503 ORTHO05D001075 4.0e-06 55.1 28 82.1
CARHR285880 Cardamine hirsuta HOM05D008503 ORTHO05D001075 6.9e-06 54.3 30 70.0
PGR119G1246 Punica granatum HOM05D008503 ORTHO05D001075 6.9e-06 54.3 109 60.6


User provided reference genes

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