Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 3.0e-265 917.9 455 100.0
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 1.5e-261 905.6 455 98.2
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 1.5e-261 905.6 455 98.2
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 7.0e-254 880.2 437 99.3
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 2.7e-242 841.6 460 92.2
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 1.0e-236 823.2 409 98.8
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 1.9e-235 818.9 411 98.1
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 2.5e-235 818.5 410 98.3
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 2.5e-235 818.5 410 98.5
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 1.0e-233 813.1 409 97.6
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.4e-233 812.8 409 97.1
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 3.0e-233 811.6 409 97.6
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 6.8e-233 810.4 409 97.1
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 1.2e-232 809.7 409 97.1
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 8.9e-225 783.5 409 92.9
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 4.9e-223 777.7 411 94.6
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 8.0e-218 760.4 409 89.2
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 3.7e-215 751.5 406 88.7
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 4.9e-215 751.1 407 87.2
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 8.3e-215 750.4 409 88.5
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.4e-214 749.6 409 87.8
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 7.0e-214 747.3 410 88.3
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 7.0e-214 747.3 410 87.8
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 3.5e-213 745.0 406 88.9
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 3.5e-213 745.0 407 87.2
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 4.6e-213 744.6 409 86.6
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 6.0e-213 744.2 409 86.8
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 6.0e-213 744.2 406 88.4
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 7.8e-213 743.8 406 88.7
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 7.8e-213 743.8 409 87.0
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.0e-212 743.4 409 86.6
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.0e-212 743.4 406 88.9
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 1.0e-212 743.4 409 87.5
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 1.0e-212 743.4 409 87.3
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.7e-212 742.7 406 88.2
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.7e-212 742.7 409 87.3
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 2.3e-212 742.3 409 86.3
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.3e-212 742.3 408 87.3
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 3.9e-212 741.5 406 88.4
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 3.9e-212 741.5 407 88.2
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 3.9e-212 741.5 409 86.1
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 5.0e-212 741.1 409 86.1
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 5.0e-212 741.1 409 87.3
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 5.0e-212 741.1 409 87.5
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 5.0e-212 741.1 407 86.7
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 5.0e-212 741.1 408 86.5
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 6.6e-212 740.7 409 86.8
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 1.1e-211 740.0 406 87.7
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 1.1e-211 740.0 408 86.3
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 1.9e-211 739.2 410 87.6
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 1.9e-211 739.2 421 85.3
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 2.5e-211 738.8 410 87.3
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 2.5e-211 738.8 407 86.5
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 2.5e-211 738.8 409 87.0
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.5e-211 738.8 409 87.0
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 4.3e-211 738.0 409 86.6
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 5.6e-211 737.6 409 87.3
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 7.3e-211 737.3 409 87.0
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 7.3e-211 737.3 409 86.6
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 7.3e-211 737.3 406 87.9
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 9.5e-211 736.9 411 87.6
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 9.5e-211 736.9 407 86.2
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.2e-210 736.5 425 84.7
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 2.1e-210 735.7 409 86.3
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 2.8e-210 735.3 409 87.0
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.8e-210 735.3 409 86.1
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 4.7e-210 734.6 409 85.6
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.7e-210 734.6 406 87.7
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 4.7e-210 734.6 410 86.3
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 6.2e-210 734.2 409 86.8
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 8.1e-210 733.8 409 85.1
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 8.1e-210 733.8 409 85.6
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 1.4e-209 733.0 407 85.5
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 2.3e-209 732.3 407 85.5
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 3.1e-209 731.9 409 85.6
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 3.1e-209 731.9 409 85.8
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 4.0e-209 731.5 410 85.4
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 5.2e-209 731.1 409 85.3
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 5.2e-209 731.1 409 85.8
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 6.8e-209 730.7 407 87.0
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 8.9e-209 730.3 408 85.3
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 1.2e-208 729.9 410 86.1
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.2e-208 729.9 409 84.8
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.6e-208 728.8 452 79.4
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 3.4e-208 728.4 409 85.6
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 3.4e-208 728.4 358 99.2
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 3.4e-208 728.4 409 86.6
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 4.4e-208 728.0 409 85.3
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 4.4e-208 728.0 436 81.9
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 9.9e-208 726.9 407 85.5
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 2.9e-207 725.3 413 84.7
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 3.7e-207 724.9 409 85.1
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 8.3e-207 723.8 409 83.6
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 1.4e-206 723.0 410 84.1
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.4e-206 723.0 409 85.1
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 1.9e-206 722.6 410 84.1
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.4e-206 722.2 451 79.4
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 4.1e-206 721.5 409 85.3
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 4.1e-206 721.5 409 84.8
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 5.4e-206 721.1 406 85.5
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 7.1e-206 720.7 409 85.3
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 1.2e-205 719.9 409 85.3
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 1.6e-205 719.5 409 82.6
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 4.6e-205 718.0 409 84.6
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 6.0e-205 717.6 400 87.0
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 6.0e-205 717.6 409 84.1
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 7.8e-205 717.2 476 75.8
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 7.3e-203 710.7 412 83.7
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 9.5e-203 710.3 412 83.7
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 4.7e-202 708.0 405 82.2
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 5.2e-201 704.5 405 82.7
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.6e-200 702.2 383 89.0
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 2.4e-198 695.7 388 87.1
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 4.1e-198 694.9 380 88.2
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 2.7e-197 692.2 452 74.3
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 4.6e-197 691.4 520 68.8
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 3.3e-195 685.3 385 85.5
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 9.0e-193 677.2 413 79.2
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 9.0e-193 677.2 358 90.2
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 9.3e-190 667.2 415 78.1
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 7.8e-189 664.1 356 89.0
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 1.6e-186 656.4 402 79.4
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 4.8e-186 654.8 401 78.6
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 2.6e-184 649.0 408 75.5
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 1.2e-181 640.2 409 78.7
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 8.1e-178 627.5 437 76.0
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 1.3e-175 620.2 406 74.6
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 3.8e-175 618.6 405 71.9
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 4.2e-174 615.1 404 72.5
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 6.9e-169 597.8 393 71.5
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 5.8e-168 594.7 322 87.0
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 6.3e-162 574.7 400 69.5
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 4.1e-153 545.4 387 70.8
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.2e-144 517.3 345 74.2
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.1e-139 500.7 309 79.3
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 6.3e-138 495.0 400 62.0
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 9.1e-129 464.5 245 90.6
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 1.6e-125 453.8 258 83.7
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 1.0e-124 451.1 368 61.4
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 2.2e-122 443.4 285 81.4
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 4.5e-120 435.6 385 56.4
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 1.8e-116 423.7 239 84.5
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.1e-113 414.5 228 87.7
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 1.6e-93 347.4 197 84.8
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 3.3e-78 296.6 420 41.2
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 4.2e-73 279.6 392 42.9
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 9.0e-68 261.9 183 71.0
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 3.0e-63 246.9 180 66.7
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 1.9e-57 227.6 141 75.2
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 3.2e-57 226.9 140 75.7
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 1.3e-55 221.5 130 82.3
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 8.4e-50 202.2 121 81.0
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 9.1e-20 102.4 128 46.9
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.6e-19 100.9 58 75.9
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 5.9e-11 73.2 337 23.1


User provided reference genes

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