Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p45790 Brassica napus HOM05D003202 ORTHO05D003534 1.0e-111 406.8 206 100.0
BolC8t52132H Brassica oleracea HOM05D003202 ORTHO05D003534 6.2e-93 344.4 206 87.9
Sp1g12720 Schrenkiella parvula HOM05D003202 ORTHO05D003534 8.7e-71 270.8 201 71.1
Thhalv10007659m.g Eutrema salsugineum HOM05D003202 ORTHO05D003534 6.5e-66 254.6 201 66.2
BraA06t24217Z Brassica rapa HOM05D003202 ORTHO05D003534 7.9e-64 247.7 203 69.0
BcaC05g25334 Brassica carinata HOM05D003202 ORTHO05D003534 1.8e-63 246.5 203 68.0
C05p12150 Brassica napus HOM05D003202 ORTHO05D003534 1.8e-63 246.5 203 68.0
A06p10350 Brassica napus HOM05D003202 ORTHO05D003534 5.1e-63 245.0 203 68.0
BolC5t29968H Brassica oleracea HOM05D003202 ORTHO05D003534 5.1e-63 245.0 203 68.0
Carub.0001s1405 Capsella rubella HOM05D003202 ORTHO05D003534 1.2e-59 233.8 201 62.2
CARHR014790 Cardamine hirsuta HOM05D003202 ORTHO05D003534 2.0e-59 233.0 203 63.1
AL1G26240 Arabidopsis lyrata HOM05D003202 ORTHO05D003534 1.4e-57 226.9 202 62.4
AT1G14350 Arabidopsis thaliana HOM05D003202 ORTHO05D003534 1.4e-57 226.9 201 62.2
BcaC07g41578 Brassica carinata HOM05D003202 ORTHO05D003534 1.6e-56 223.4 112 100.0
BcaB02g06485 Brassica carinata HOM05D003202 ORTHO05D003534 2.3e-55 219.5 202 62.4
Sp2g13920 Schrenkiella parvula HOM05D003202 ORTHO05D003534 2.7e-48 196.1 220 52.7
Thhalv10004109m.g Eutrema salsugineum HOM05D003202 ORTHO05D003534 3.6e-48 195.7 227 50.7
THA.LOC104805146 Tarenaya hassleriana HOM05D003202 ORTHO05D003534 1.4e-47 193.7 222 50.5
AT2G02820 Arabidopsis thaliana HOM05D003202 ORTHO05D003534 1.8e-47 193.4 224 51.8
Aa31LG2G7450 Aethionema arabicum HOM05D003202 ORTHO05D003534 7.5e-46 188.0 221 50.2
Carub.0005s0173 Capsella rubella HOM05D003202 ORTHO05D003534 9.7e-46 187.6 220 50.0
AL5G12030 Arabidopsis lyrata HOM05D003202 ORTHO05D003534 2.8e-45 186.0 222 50.9
BcaB07g30321 Brassica carinata HOM05D003202 ORTHO05D003534 4.8e-45 185.3 217 51.6
CARHR145260 Cardamine hirsuta HOM05D003202 ORTHO05D003534 1.4e-44 183.7 206 53.4
THA.LOC104824084 Tarenaya hassleriana HOM05D003202 ORTHO05D003534 2.4e-44 183.0 211 51.2
BcaC06g31215 Brassica carinata HOM05D003202 ORTHO05D003534 2.0e-43 179.9 221 49.8
BcaC03g17170 Brassica carinata HOM05D003202 ORTHO05D003534 7.7e-43 177.9 223 50.7
A02p33130 Brassica napus HOM05D003202 ORTHO05D003534 7.7e-43 177.9 224 50.9
BraA02t08336Z Brassica rapa HOM05D003202 ORTHO05D003534 1.3e-42 177.2 224 50.4
C02p50930 Brassica napus HOM05D003202 ORTHO05D003534 1.7e-42 176.8 223 49.3
BolC2t11184H Brassica oleracea HOM05D003202 ORTHO05D003534 2.9e-42 176.0 223 50.2
BcaC06g34034 Brassica carinata HOM05D003202 ORTHO05D003534 6.5e-42 174.9 203 53.2
C07p33510 Brassica napus HOM05D003202 ORTHO05D003534 6.5e-42 174.9 203 53.2
BolC7t43861H Brassica oleracea HOM05D003202 ORTHO05D003534 6.5e-42 174.9 203 53.2
A06p43460 Brassica napus HOM05D003202 ORTHO05D003534 1.8e-39 166.8 201 49.3
BraA06t27231Z Brassica rapa HOM05D003202 ORTHO05D003534 1.8e-39 166.8 201 49.3
CANSAT64G1870 Cannabis sativa HOM05D003202 ORTHO05D003534 3.8e-34 149.1 230 41.7
Duzib251G0052 Durio zibethinus HOM05D003202 ORTHO05D003534 8.6e-34 147.9 227 42.7
Hma1.2p1_0598F.1_g186820 Hydrangea macrophylla HOM05D003202 ORTHO05D003534 2.5e-33 146.4 228 40.4
Thecc.02G352100 Theobroma cacao HOM05D003202 ORTHO05D003534 5.5e-33 145.2 227 43.2
COL.COLO4_22970 Corchorus olitorius HOM05D003202 ORTHO05D003534 7.2e-33 144.8 226 43.8
GSVIVG01020038001 Vitis vinifera HOM05D003202 ORTHO05D003534 7.2e-33 144.8 230 39.6
Atru.chr11.1835 Acer truncatum HOM05D003202 ORTHO05D003534 3.6e-32 142.5 226 42.0
Aa31LG1G690 Aethionema arabicum HOM05D003202 ORTHO05D003534 4.7e-32 142.1 197 46.2
Gohir.A03G098800 Gossypium hirsutum HOM05D003202 ORTHO05D003534 1.0e-31 141.0 226 41.6
RcHm_v2.0_Chr4g0440161 Rosa chinensis HOM05D003202 ORTHO05D003534 1.0e-31 141.0 231 41.1
FvH4_4g31660 Fragaria vesca HOM05D003202 ORTHO05D003534 1.8e-31 140.2 230 40.4
FAN12G1936 Fragaria x ananassa HOM05D003202 ORTHO05D003534 1.8e-31 140.2 230 40.4
Gohir.A13G072500 Gossypium hirsutum HOM05D003202 ORTHO05D003534 1.8e-31 140.2 224 42.0
Duzib268G1601 Durio zibethinus HOM05D003202 ORTHO05D003534 3.0e-31 139.4 227 43.6
FAN07G0867 Fragaria x ananassa HOM05D003202 ORTHO05D003534 4.0e-31 139.0 230 40.4
FAN22G0720 Fragaria x ananassa HOM05D003202 ORTHO05D003534 4.0e-31 139.0 230 40.4
Gorai.005G139500 Gossypium raimondii HOM05D003202 ORTHO05D003534 4.0e-31 139.0 227 41.4
Gohir.D02G114500 Gossypium hirsutum HOM05D003202 ORTHO05D003534 5.2e-31 138.7 227 42.3
Gorai.013G083300 Gossypium raimondii HOM05D003202 ORTHO05D003534 5.2e-31 138.7 227 43.6
QL03p064932 Quercus lobata HOM05D003202 ORTHO05D003534 5.2e-31 138.7 230 38.7
Gohir.D13G072600 Gossypium hirsutum HOM05D003202 ORTHO05D003534 8.9e-31 137.9 227 43.2
Cpa.g.sc183.27 Carica papaya HOM05D003202 ORTHO05D003534 1.5e-30 137.1 231 40.3
FAN17G2873 Fragaria x ananassa HOM05D003202 ORTHO05D003534 2.6e-30 136.3 230 40.4
Dinv24972 Davidia involucrata HOM05D003202 ORTHO05D003534 3.4e-30 136.0 230 40.4
Dinv34175 Davidia involucrata HOM05D003202 ORTHO05D003534 3.4e-30 136.0 230 39.6
Ciclev10031405m.g Citrus clementina HOM05D003202 ORTHO05D003534 4.4e-30 135.6 228 41.2
Lj6C792T7 Lonicera japonica HOM05D003202 ORTHO05D003534 1.3e-29 134.0 227 39.6
CSS0013069 Camellia sinensis var. sinensis HOM05D003202 ORTHO05D003534 1.7e-29 133.7 230 37.4
CSS0022785 Camellia sinensis var. sinensis HOM05D003202 ORTHO05D003534 2.2e-29 133.3 238 37.4
CSS0005353 Camellia sinensis var. sinensis HOM05D003202 ORTHO05D003534 2.8e-29 132.9 230 37.4
Manes.05G098700 Manihot esculenta HOM05D003202 ORTHO05D003534 1.1e-28 131.0 231 41.1
Sed0001429 Sechium edule HOM05D003202 ORTHO05D003534 1.4e-28 130.6 228 39.5
Manes.01G188000 Manihot esculenta HOM05D003202 ORTHO05D003534 1.8e-28 130.2 230 38.3
Actinidia04029 Actinidia chinensis HOM05D003202 ORTHO05D003534 2.4e-28 129.8 228 38.2
vmacro16338 Vaccinium macrocarpon HOM05D003202 ORTHO05D003534 2.4e-28 129.8 229 35.8
Sed0020688 Sechium edule HOM05D003202 ORTHO05D003534 9.2e-28 127.9 228 37.7
Ah.03g135320 Amaranthus hybridus HOM05D003202 ORTHO05D003534 1.2e-27 127.5 203 41.4
Prupe.1G271100 Prunus persica HOM05D003202 ORTHO05D003534 1.2e-27 127.5 229 37.6
Sabra08G0113000 Salix brachista HOM05D003202 ORTHO05D003534 1.2e-27 127.5 230 39.1
Lj3A1041G81 Lonicera japonica HOM05D003202 ORTHO05D003534 1.6e-27 127.1 229 36.7
Cfa009008 Carpinus fangiana HOM05D003202 ORTHO05D003534 2.0e-27 126.7 231 38.1
CSS0015674 Camellia sinensis var. sinensis HOM05D003202 ORTHO05D003534 4.5e-27 125.6 202 39.6
Nitab4.5_0003062g0070 Nicotiana tabacum HOM05D003202 ORTHO05D003534 4.5e-27 125.6 218 38.1
Potri.008G148400 Populus trichocarpa HOM05D003202 ORTHO05D003534 4.5e-27 125.6 231 39.4
PGR119G0965 Punica granatum HOM05D003202 ORTHO05D003534 5.9e-27 125.2 213 40.4
Nn3g17166 Nelumbo nucifera HOM05D003202 ORTHO05D003534 7.8e-27 124.8 228 36.4
Potri.010G093000 Populus trichocarpa HOM05D003202 ORTHO05D003534 7.8e-27 124.8 231 37.7
Haze_12037 Corylus avellana HOM05D003202 ORTHO05D003534 1.3e-26 124.0 231 38.1
CiPaw.05G138200 Carya illinoinensis HOM05D003202 ORTHO05D003534 1.7e-26 123.6 229 36.2
Hund25259 Selenicereus undatus HOM05D003202 ORTHO05D003534 1.7e-26 123.6 207 39.1
ClCG05G024470 Citrullus lanatus HOM05D003202 ORTHO05D003534 2.9e-26 122.9 229 37.6
MELO3C012077.2 Cucumis melo HOM05D003202 ORTHO05D003534 2.9e-26 122.9 230 38.3
Peaxi162Scf00503g00613 Petunia axillaris HOM05D003202 ORTHO05D003534 6.6e-26 121.7 234 36.8
Rhsim12G0131400 Rhododendron simsii HOM05D003202 ORTHO05D003534 8.6e-26 121.3 229 34.5
CsaV3_5G032490 Cucumis sativus L. HOM05D003202 ORTHO05D003534 1.5e-25 120.6 230 38.3
Nitab4.5_0007777g0020 Nicotiana tabacum HOM05D003202 ORTHO05D003534 1.9e-25 120.2 233 35.6
Sabra10G0065500 Salix brachista HOM05D003202 ORTHO05D003534 1.9e-25 120.2 237 38.4
CAN.G512.9 Capsicum annuum HOM05D003202 ORTHO05D003534 5.6e-25 118.6 233 36.9
Solyc05g007160.3 Solanum lycopersicum HOM05D003202 ORTHO05D003534 5.6e-25 118.6 233 36.1
RhsimUnG0242100 Rhododendron simsii HOM05D003202 ORTHO05D003534 7.3e-25 118.2 229 35.4
Sopen05g003120 Solanum pennellii HOM05D003202 ORTHO05D003534 7.3e-25 118.2 233 34.8
SalBow2G0575 Salvia bowleyana HOM05D003202 ORTHO05D003534 9.5e-25 117.9 229 34.9
TWI75G0627 Tripterygium wilfordii HOM05D003202 ORTHO05D003534 9.5e-25 117.9 228 37.7
Nn4g23087 Nelumbo nucifera HOM05D003202 ORTHO05D003534 1.6e-24 117.1 228 38.6
EL10Ac6g13174 Beta vulgaris HOM05D003202 ORTHO05D003534 2.8e-24 116.3 205 39.0
ECA234G1152 Erigeron canadensis HOM05D003202 ORTHO05D003534 3.6e-24 115.9 209 37.8
SalBow2G2383 Salvia bowleyana HOM05D003202 ORTHO05D003534 3.6e-24 115.9 229 34.9
Sc14g0008310 Simmondsia chinensis HOM05D003202 ORTHO05D003534 8.0e-24 114.8 204 39.7
VMungo1215G0151 Vigna mungo HOM05D003202 ORTHO05D003534 8.0e-24 114.8 224 38.4
TPR.G4084 Trifolium pratense HOM05D003202 ORTHO05D003534 1.0e-23 114.4 225 36.0
MSTRG.2355 Avicennia marina HOM05D003202 ORTHO05D003534 1.8e-23 113.6 230 34.8
Lj2g0000716 Lotus japonicus HOM05D003202 ORTHO05D003534 3.0e-23 112.8 223 35.9
TAR374G1148 Trochodendron aralioides HOM05D003202 ORTHO05D003534 3.0e-23 112.8 230 36.5
Lsat_1_v5_gn_8_53780 Lactuca sativa HOM05D003202 ORTHO05D003534 4.0e-23 112.5 205 38.0
Lalb_Chr10g0098091 Lupinus albus HOM05D003202 ORTHO05D003534 4.0e-23 112.5 218 37.6
AUR62028814 Chenopodium quinoa HOM05D003202 ORTHO05D003534 8.9e-23 111.3 212 37.7
Eucgr.B03417 Eucalyptus grandis HOM05D003202 ORTHO05D003534 8.9e-23 111.3 230 35.2
Phvul.002G088900 Phaseolus vulgaris HOM05D003202 ORTHO05D003534 8.9e-23 111.3 224 37.9
SGA_v2.0_scaffold53G19435 Striga asiatica HOM05D003202 ORTHO05D003534 8.9e-23 111.3 228 32.9
MSTRG.683 Avicennia marina HOM05D003202 ORTHO05D003534 1.2e-22 110.9 229 34.5
Glyma.02G019300 Glycine max HOM05D003202 ORTHO05D003534 1.2e-22 110.9 224 37.1
Cc11_g13330 Coffea canephora HOM05D003202 ORTHO05D003534 2.0e-22 110.2 230 35.7
DCAR_027399 Daucus carota HOM05D003202 ORTHO05D003534 2.6e-22 109.8 232 34.5
Ah.02g131270 Amaranthus hybridus HOM05D003202 ORTHO05D003534 3.4e-22 109.4 208 38.9
CiPaw.06G082400 Carya illinoinensis HOM05D003202 ORTHO05D003534 5.8e-22 108.6 230 38.3
AUR62005744 Chenopodium quinoa HOM05D003202 ORTHO05D003534 5.8e-22 108.6 212 36.8
MD16G1076100 Malus domestica HOM05D003202 ORTHO05D003534 7.5e-22 108.2 227 35.2
MSTRG.7819 Avicennia marina HOM05D003202 ORTHO05D003534 9.8e-22 107.8 229 34.1
Glyma.01G044300 Glycine max HOM05D003202 ORTHO05D003534 9.8e-22 107.8 223 36.3
TAR371G0708 Trochodendron aralioides HOM05D003202 ORTHO05D003534 2.2e-21 106.7 141 42.6
Medtr5g038910 Medicago truncatula HOM05D003202 ORTHO05D003534 2.9e-21 106.3 224 33.9
PGR102G2966 Punica granatum HOM05D003202 ORTHO05D003534 6.4e-21 105.1 226 35.8
Lalb_Chr04g0256211 Lupinus albus HOM05D003202 ORTHO05D003534 1.8e-20 103.6 225 36.4
MD13G1075000 Malus domestica HOM05D003202 ORTHO05D003534 4.1e-20 102.4 230 36.1
Ca_04759_v3 Cicer arietinum L. HOM05D003202 ORTHO05D003534 7.0e-20 101.7 224 33.0
Hund05899 Selenicereus undatus HOM05D003202 ORTHO05D003534 1.2e-19 100.9 210 34.8
Eucgr.G02522 Eucalyptus grandis HOM05D003202 ORTHO05D003534 1.6e-19 100.5 230 36.1
HanXRQChr15g0485621 Helianthus annuus HOM05D003202 ORTHO05D003534 1.6e-19 100.5 202 37.1
TAR629G1941 Trochodendron aralioides HOM05D003202 ORTHO05D003534 1.6e-19 100.5 232 33.2
SalBow8G2806 Salvia bowleyana HOM05D003202 ORTHO05D003534 2.7e-19 99.8 206 36.9
HanXRQChr12g0382891 Helianthus annuus HOM05D003202 ORTHO05D003534 7.8e-19 98.2 209 35.9
HanXRQChr14g0429291 Helianthus annuus HOM05D003202 ORTHO05D003534 7.8e-19 98.2 209 35.9
Psat2g121880 Pisum sativum HOM05D003202 ORTHO05D003534 7.8e-19 98.2 226 34.5
arahy.Tifrunner.gnm1.ann1.X2MKKS Arachis hypogaea HOM05D003202 ORTHO05D003534 1.3e-18 97.4 228 35.1
MBI02_g05732_MAGBIO Magnolia biondii HOM05D003202 ORTHO05D003534 2.3e-18 96.7 131 44.3
Duzib248G0847 Durio zibethinus HOM05D003202 ORTHO05D003534 3.9e-18 95.9 111 47.7
Migut.K00887 Erythranthe guttata HOM05D003202 ORTHO05D003534 3.9e-18 95.9 202 37.1
Oeu000624.1 Olea europaea HOM05D003202 ORTHO05D003534 3.9e-18 95.9 219 35.2
Migut.L01322 Erythranthe guttata HOM05D003202 ORTHO05D003534 5.0e-18 95.5 213 32.9
Oeu045418.2 Olea europaea HOM05D003202 ORTHO05D003534 5.0e-18 95.5 178 38.8
arahy.Tifrunner.gnm1.ann1.XU3QCQ Arachis hypogaea HOM05D003202 ORTHO05D003534 2.5e-17 93.2 224 33.9
PSO591G0240 Papaver somniferum HOM05D003202 ORTHO05D003534 5.6e-17 92.0 251 29.1
SGA_v2.0_scaffold87G26950 Striga asiatica HOM05D003202 ORTHO05D003534 5.6e-17 92.0 204 35.3
Phvul.003G067800 Phaseolus vulgaris HOM05D003202 ORTHO05D003534 7.3e-17 91.7 225 33.8
MBI05_g00392_MAGBIO Magnolia biondii HOM05D003202 ORTHO05D003534 9.5e-17 91.3 230 33.5
DCAR_031036 Daucus carota HOM05D003202 ORTHO05D003534 4.7e-16 89.0 238 30.7
PSO832G0571 Papaver somniferum HOM05D003202 ORTHO05D003534 1.4e-15 87.4 250 27.2
HanXRQChr17g0570481 Helianthus annuus HOM05D003202 ORTHO05D003534 6.8e-15 85.1 212 32.1
arahy.Tifrunner.gnm1.ann1.FBF79B Arachis hypogaea HOM05D003202 ORTHO05D003534 1.5e-14 84.0 224 34.4
arahy.Tifrunner.gnm1.ann1.WMRY2G Arachis hypogaea HOM05D003202 ORTHO05D003534 1.5e-14 84.0 242 33.5
Lsat_1_v5_gn_4_8620 Lactuca sativa HOM05D003202 ORTHO05D003534 3.4e-14 82.8 206 34.0
Hma1.2p1_0028F.1_g017840 Hydrangea macrophylla HOM05D003202 ORTHO05D003534 4.4e-14 82.4 112 42.0
Aqoxy3G03326 Aquilegia oxysepala HOM05D003202 ORTHO05D003534 5.8e-14 82.0 148 35.8
VMungo0251G2157 Vigna mungo HOM05D003202 ORTHO05D003534 7.5e-14 81.6 224 33.5
Lalb_Chr17g0340491 Lupinus albus HOM05D003202 ORTHO05D003534 2.2e-13 80.1 210 34.8
unitig_8.g3200 Utricularia gibba HOM05D003202 ORTHO05D003534 2.2e-13 80.1 240 32.5
arahy.Tifrunner.gnm1.ann1.TP47QD Arachis hypogaea HOM05D003202 ORTHO05D003534 8.3e-13 78.2 223 35.9
PGSC0003DMG400025612 Solanum tuberosum HOM05D003202 ORTHO05D003534 8.3e-13 78.2 112 39.3
Psat3g183440 Pisum sativum HOM05D003202 ORTHO05D003534 5.4e-12 75.5 125 38.4
HPP92_018584 Vanilla planifolia HOM05D003202 ORTHO05D003534 1.3e-10 70.9 204 32.8
Glyma.08G298200 Glycine max HOM05D003202 ORTHO05D003534 3.0e-10 69.7 106 39.6
PGSC0003DMG400026758 Solanum tuberosum HOM05D003202 ORTHO05D003534 1.9e-09 67.0 230 29.6
arahy.Tifrunner.gnm1.ann1.03W370 Arachis hypogaea HOM05D003202 ORTHO05D003534 2.5e-09 66.6 224 28.6
FAN07G0887 Fragaria x ananassa HOM05D003202 ORTHO05D003534 3.3e-09 66.2 66 57.6
arahy.Tifrunner.gnm1.ann1.BY5KCT Arachis hypogaea HOM05D003202 ORTHO05D003534 7.3e-09 65.1 224 28.1
ATR0564G017 Amborella trichopoda HOM05D003202 ORTHO05D003534 2.1e-08 63.5 225 27.6
Oeu001583.1 Olea europaea HOM05D003202 ORTHO05D003534 2.1e-08 63.5 150 31.3
Sopen04g001760 Solanum pennellii HOM05D003202 ORTHO05D003534 2.1e-08 63.5 230 30.0
PGSC0003DMG400002828 Solanum tuberosum HOM05D003202 ORTHO05D003534 2.1e-08 63.5 230 29.1
Actinidia31195 Actinidia chinensis HOM05D003202 ORTHO05D003534 6.2e-08 62.0 40 75.0
Glyma.18G123600 Glycine max HOM05D003202 ORTHO05D003534 8.1e-08 61.6 106 37.7
unitig_22.g6526 Utricularia gibba HOM05D003202 ORTHO05D003534 8.1e-08 61.6 230 28.7
Ca_24255_v3 Cicer arietinum L. HOM05D003202 ORTHO05D003534 7.5e-06 55.1 223 28.3


User provided reference genes

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