Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p43400 Brassica napus HOM05D000173 ORTHO05D013392 1.0e-38 162.9 82 100.0
BcaC07g41329 Brassica carinata HOM05D003541 ORTHO05D004095 1.7e-25 119.0 62 96.8
BolC8t51888H Brassica oleracea HOM05D003541 ORTHO05D004095 9.6e-21 103.2 51 100.0
BcaB03g12979 Brassica carinata HOM05D003541 ORTHO05D004095 5.8e-18 94.0 51 92.2
BcaB07g31853 Brassica carinata HOM05D000173 ORTHO05D004400 5.8e-18 94.0 51 92.2
BcaC05g25737 Brassica carinata HOM05D000173 ORTHO05D004400 5.8e-18 94.0 51 92.2
BcaNung05445 Brassica carinata HOM05D000173 ORTHO05D004400 5.8e-18 94.0 51 92.2
A06p14500 Brassica napus HOM05D000173 ORTHO05D004400 5.8e-18 94.0 51 92.2
A08p30410 Brassica napus HOM05D000173 ORTHO05D004400 5.8e-18 94.0 51 92.2
C05p16720 Brassica napus HOM05D000173 ORTHO05D004400 5.8e-18 94.0 51 92.2
C08p18620 Brassica napus HOM05D000173 ORTHO05D004400 5.8e-18 94.0 51 92.2
BolC5t30372H Brassica oleracea HOM05D000173 ORTHO05D004400 5.8e-18 94.0 51 92.2
BolC8t49489H Brassica oleracea HOM05D003541 ORTHO05D004095 5.8e-18 94.0 51 92.2
BraA06t24575Z Brassica rapa HOM05D000173 ORTHO05D004400 5.8e-18 94.0 51 92.2
BraA08t34974Z Brassica rapa HOM05D000173 ORTHO05D004400 5.8e-18 94.0 51 92.2
CARHR019060 Cardamine hirsuta HOM05D000173 ORTHO05D004400 5.8e-18 94.0 51 92.2
Thhalv10007641m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 5.8e-18 94.0 51 92.2
Sp1g16390 Schrenkiella parvula HOM05D000173 ORTHO05D004400 5.8e-18 94.0 51 92.2
Aa31LG7G3120 Aethionema arabicum HOM05D000173 ORTHO05D004400 7.6e-18 93.6 51 92.2
Thhalv10018569m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 7.6e-18 93.6 51 92.2
Sp5g29110 Schrenkiella parvula HOM05D000173 ORTHO05D004400 7.6e-18 93.6 51 92.2
AL1G30880 Arabidopsis lyrata HOM05D000173 ORTHO05D004400 1.3e-17 92.8 51 90.2
AT1G18450 Arabidopsis thaliana HOM05D000173 ORTHO05D004400 1.3e-17 92.8 51 90.2
Carub.0001s1805 Capsella rubella HOM05D000173 ORTHO05D004400 1.3e-17 92.8 51 90.2
Carub.0001s1808 Capsella rubella HOM05D000173 ORTHO05D004400 1.3e-17 92.8 51 90.2
ClCG06G014940 Citrullus lanatus HOM05D000173 ORTHO05D004400 1.9e-16 89.0 52 82.7
FvH4_3g17390 Fragaria vesca HOM05D000173 ORTHO05D004400 1.9e-16 89.0 51 86.3
FAN11G2015 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.9e-16 89.0 51 86.3
FAN16G2607 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.9e-16 89.0 51 86.3
FAN21G3174 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.9e-16 89.0 51 86.3
FAN25G2209 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.9e-16 89.0 51 86.3
RcHm_v2.0_Chr5g0028921 Rosa chinensis HOM05D000173 ORTHO05D004400 1.9e-16 89.0 51 86.3
Sc04g0003650 Simmondsia chinensis HOM05D000173 ORTHO05D004400 1.9e-16 89.0 51 86.3
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 2.5e-16 88.6 54 81.5
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 2.5e-16 88.6 54 81.5
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 3.2e-16 88.2 51 86.3
Aqoxy5G04178 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 4.2e-16 87.8 51 84.3
EL10Ac5g11421 Beta vulgaris HOM05D000173 ORTHO05D004400 4.2e-16 87.8 51 84.3
CANSAT35G1697 Cannabis sativa HOM05D000173 ORTHO05D004400 4.2e-16 87.8 51 84.3
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 4.2e-16 87.8 51 84.3
CiPaw.16G084900 Carya illinoinensis HOM05D000173 ORTHO05D004400 4.2e-16 87.8 51 84.3
AUR62029850 Chenopodium quinoa HOM05D000173 ORTHO05D004400 4.2e-16 87.8 51 84.3
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 4.2e-16 87.8 51 84.3
Hma1.2p1_0340F.1_g129760 Hydrangea macrophylla HOM05D000173 ORTHO05D004400 4.2e-16 87.8 51 84.3
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 4.2e-16 87.8 51 84.3
Prupe.4G154200 Prunus persica HOM05D000173 ORTHO05D004400 4.2e-16 87.8 51 84.3
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 4.2e-16 87.8 51 84.3
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 4.2e-16 87.8 51 84.3
Ah.09g233670 Amaranthus hybridus HOM05D000173 ORTHO05D004400 5.5e-16 87.4 51 84.3
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 5.5e-16 87.4 51 82.4
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 7.1e-16 87.0 51 84.3
COL.COLO4_38438 Corchorus olitorius HOM05D000173 ORTHO05D004400 9.3e-16 86.7 51 82.4
Duzib150G1369 Durio zibethinus HOM05D000173 ORTHO05D004400 9.3e-16 86.7 51 82.4
Duzib168G1916 Durio zibethinus HOM05D000173 ORTHO05D004400 9.3e-16 86.7 51 82.4
Gohir.A13G215300 Gossypium hirsutum HOM05D000173 ORTHO05D004400 9.3e-16 86.7 51 82.4
Gohir.D13G219000 Gossypium hirsutum HOM05D000173 ORTHO05D004400 9.3e-16 86.7 51 82.4
Gorai.013G249800 Gossypium raimondii HOM05D000173 ORTHO05D004400 9.3e-16 86.7 51 82.4
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 9.3e-16 86.7 51 84.3
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 9.3e-16 86.7 51 82.4
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 9.3e-16 86.7 51 82.4
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 9.3e-16 86.7 51 82.4
Thecc.09G221900 Theobroma cacao HOM05D000173 ORTHO05D004400 9.3e-16 86.7 51 82.4
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
Ca_14793_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
CsaV3_1G003700 Cucumis sativus L. HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
DCAR_011346 Daucus carota HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 84.3
Dinv07362 Davidia involucrata HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
Migut.D01593 Erythranthe guttata HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
Medtr5g066400 Medicago truncatula HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
Medtr8g007440 Medicago truncatula HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
Medtr8g464900 Medicago truncatula HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
Nitab4.5_0000208g0190 Nicotiana tabacum HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 84.3
Psat4g222600 Pisum sativum HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
SalBow5G1565 Salvia bowleyana HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
SalBow5G1673 Salvia bowleyana HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
TPR.G32123 Trifolium pratense HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 82.4
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 1.2e-15 86.3 54 79.6
vmacro22486 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 1.2e-15 86.3 54 79.6
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 1.2e-15 86.3 51 84.3
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 1.6e-15 85.9 54 77.8
CSS0036356 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D013392 1.6e-15 85.9 52 82.7
FvH4_6g50670 Fragaria vesca HOM05D000173 ORTHO05D004400 1.6e-15 85.9 51 82.4
MD03G1252000 Malus domestica HOM05D000173 ORTHO05D004400 1.6e-15 85.9 51 82.4
PSO017G6263 Papaver somniferum HOM05D000173 ORTHO05D004400 2.1e-15 85.5 51 80.4
PSO063G4537 Papaver somniferum HOM05D000173 ORTHO05D004400 2.1e-15 85.5 51 80.4
TWI81G0665 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 2.1e-15 85.5 51 80.4
Ciclev10020836m.g Citrus clementina HOM05D000173 ORTHO05D004400 2.7e-15 85.1 54 75.9
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 2.7e-15 85.1 51 82.4
THA.LOC104813899 Tarenaya hassleriana HOM05D000173 ORTHO05D004400 2.7e-15 85.1 51 82.4
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 3.5e-15 84.7 51 82.4
Glyma.07G118800 Glycine max HOM05D000173 ORTHO05D004400 3.5e-15 84.7 51 80.4
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 3.5e-15 84.7 51 80.4
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 3.5e-15 84.7 51 80.4
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 3.5e-15 84.7 51 80.4
SGA_v2.0_scaffold62G21627 Striga asiatica HOM05D000173 ORTHO05D004400 3.5e-15 84.7 51 80.4
CARHR067020 Cardamine hirsuta HOM05D000173 ORTHO05D004400 4.6e-15 84.3 50 84.0
CDE04G0761 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 4.6e-15 84.3 51 82.4
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 4.6e-15 84.3 51 82.4
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 4.6e-15 84.3 51 82.4
Manes.01G012800 Manihot esculenta HOM05D000173 ORTHO05D004400 6.0e-15 84.0 51 80.4
Solyc12g037980.2 Solanum lycopersicum HOM05D000173 ORTHO05D004400 6.0e-15 84.0 51 80.4
Sopen12g017690 Solanum pennellii HOM05D000173 ORTHO05D004400 6.0e-15 84.0 51 80.4
PGSC0003DMG400021766 Solanum tuberosum HOM05D000173 ORTHO05D004400 6.0e-15 84.0 51 80.4
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 7.9e-15 83.6 51 80.4
Potri.012G061300 Populus trichocarpa HOM05D000173 ORTHO05D004400 7.9e-15 83.6 51 80.4
MSTRG.9268 Avicennia marina HOM05D000173 ORTHO05D004400 1.0e-14 83.2 51 78.4
ATR0064G093 Amborella trichopoda HOM05D000173 ORTHO05D004400 1.3e-14 82.8 51 80.4
arahy.Tifrunner.gnm1.ann1.DFGQ2J Arachis hypogaea HOM05D000173 ORTHO05D004400 1.3e-14 82.8 51 80.4
arahy.Tifrunner.gnm1.ann1.NI3B5C Arachis hypogaea HOM05D000173 ORTHO05D004400 1.3e-14 82.8 51 80.4
MSTRG.4553 Avicennia marina HOM05D000173 ORTHO05D004400 1.3e-14 82.8 51 76.5
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 1.3e-14 82.8 51 80.4
Mapoly0063s0059 Marchantia polymorpha HOM05D000173 ORTHO05D004400 1.3e-14 82.8 51 78.4
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 1.3e-14 82.8 51 78.4
Os08g0137200 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D004400 1.3e-14 82.8 51 80.4
unitig_736.g22474 Utricularia gibba HOM05D000173 ORTHO05D004400 1.3e-14 82.8 51 76.5
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 1.8e-14 82.4 51 78.4
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 1.8e-14 82.4 51 78.4
Lsat_1_v5_gn_8_109740 Lactuca sativa HOM05D000173 ORTHO05D004400 1.8e-14 82.4 51 78.4
Pp3c15_24010 Physcomitrium patens HOM05D000173 ORTHO05D004400 1.8e-14 82.4 51 80.4
HPP92_025882 Vanilla planifolia HOM05D000173 ORTHO05D004400 1.8e-14 82.4 51 78.4
AagrBONN_evm.TU.Sc2ySwM_228.3208 Anthoceros agrestis HOM05D000173 ORTHO05D004400 2.3e-14 82.0 51 80.4
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 2.3e-14 82.0 51 80.4
Sabra15G0075200 Salix brachista HOM05D000173 ORTHO05D004400 2.3e-14 82.0 51 80.4
Actinidia18939 Actinidia chinensis HOM05D000173 ORTHO05D013392 3.9e-14 81.3 56 71.4
VMungo0251G1487 Vigna mungo HOM05D000173 ORTHO05D004400 3.9e-14 81.3 51 80.4
CBR_g46675 Chara braunii HOM05D000173 ORTHO05D004400 1.1e-13 79.7 51 76.5
CBR_g46712 Chara braunii HOM05D000173 ORTHO05D004400 1.1e-13 79.7 51 76.5
CSS0004352 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 1.5e-13 79.3 68 64.7
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 1.9e-13 79.0 51 76.5
Glyma.05G232900 Glycine max HOM05D000173 ORTHO05D004400 2.5e-13 78.6 55 70.9
Lalb_Chr05g0222631 Lupinus albus HOM05D000173 ORTHO05D004400 2.5e-13 78.6 51 74.5
Zm00001eb000800 Zea mays HOM05D000173 ORTHO05D004400 3.3e-13 78.2 51 74.5
SMO347G0056 Selaginella moellendorffii HOM05D000173 ORTHO05D004400 5.7e-13 77.4 51 74.5
Pp3c9_24230 Physcomitrium patens HOM05D000173 ORTHO05D004400 1.8e-11 72.4 54 70.4
TWI15G1235 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 2.4e-11 72.0 44 77.3
GSVIVG01003099001 Vitis vinifera HOM05D000173 ORTHO05D000316 1.1e-08 63.2 92 35.9
AUR62025878 Chenopodium quinoa HOM05D000173 ORTHO05D004400 1.9e-08 62.4 36 83.3
Haze_26538 Corylus avellana HOM05D000173 ORTHO05D000316 3.2e-08 61.6 51 54.9
Migut.C00434 Erythranthe guttata HOM05D000173 ORTHO05D000316 3.2e-08 61.6 94 33.0
GSVIVG01033494001 Vitis vinifera HOM05D000173 ORTHO05D000316 4.2e-08 61.2 93 34.4
Cc04_g07390 Coffea canephora HOM05D000173 ORTHO05D004400 1.2e-07 59.7 35 82.9
PRCOL_00006066 Prasinoderma coloniale HOM05D000173 ORTHO05D004400 3.5e-07 58.2 50 52.0
BraA09t41366Z Brassica rapa HOM05D003541 ORTHO05D004095 4.6e-07 57.8 51 68.6
Sabra15G0073100 Salix brachista HOM05D000173 ORTHO05D004400 6.1e-07 57.4 124 35.5
Haze_04565 Corylus avellana HOM05D000173 ORTHO05D013392 1.8e-06 55.8 36 77.8


User provided reference genes

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