Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p43160 Brassica napus HOM05D000133 ORTHO05D101788 3.0e-54 214.9 107 100.0
AT3G08940 Arabidopsis thaliana HOM05D000133 ORTHO05D003668 7.9e-07 57.4 47 68.1
AT5G01530 Arabidopsis thaliana HOM05D000133 ORTHO05D003668 7.9e-07 57.4 47 68.1
BcaB05g21919 Brassica carinata HOM05D000133 ORTHO05D003668 7.9e-07 57.4 47 68.1
BcaC01g04206 Brassica carinata HOM05D000133 ORTHO05D003668 7.9e-07 57.4 47 68.1
BcaC03g13080 Brassica carinata HOM05D000133 ORTHO05D003668 7.9e-07 57.4 47 68.1
BcaC03g13081 Brassica carinata HOM05D000133 ORTHO05D003668 7.9e-07 57.4 47 68.1
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 7.9e-07 57.4 47 68.1
A05p39910 Brassica napus HOM05D000133 ORTHO05D003668 7.9e-07 57.4 47 68.1
C02p00130 Brassica napus HOM05D000133 ORTHO05D003668 7.9e-07 57.4 47 68.1
C05p58950 Brassica napus HOM05D000133 ORTHO05D003668 7.9e-07 57.4 47 68.1
BolC2t06010H Brassica oleracea HOM05D000133 ORTHO05D003668 7.9e-07 57.4 47 68.1
BolC5t34548H Brassica oleracea HOM05D000133 ORTHO05D003668 7.9e-07 57.4 47 68.1
BraA02t04683Z Brassica rapa HOM05D000133 ORTHO05D003668 7.9e-07 57.4 47 68.1
BraSC256t45933Z Brassica rapa HOM05D000133 ORTHO05D003668 7.9e-07 57.4 47 68.1
Thhalv10014055m.g Eutrema salsugineum HOM05D000133 ORTHO05D003668 7.9e-07 57.4 47 68.1
Thhalv10021263m.g Eutrema salsugineum HOM05D000133 ORTHO05D003668 7.9e-07 57.4 47 68.1
Sp3g07330 Schrenkiella parvula HOM05D000133 ORTHO05D003668 7.9e-07 57.4 47 68.1
AL3G19940 Arabidopsis lyrata HOM05D000133 ORTHO05D003668 1.0e-06 57.0 47 66.0
AL6G10520 Arabidopsis lyrata HOM05D000133 ORTHO05D003668 1.0e-06 57.0 47 66.0
Carub.0003s0807 Capsella rubella HOM05D000133 ORTHO05D003668 1.0e-06 57.0 47 66.0
Sp6g40810 Schrenkiella parvula HOM05D000133 ORTHO05D003668 1.0e-06 57.0 47 66.0
SGA_v2.0_scaffold429G51546 Striga asiatica HOM05D000133 ORTHO05D003668 1.3e-06 56.6 47 66.0
CARHR211890 Cardamine hirsuta HOM05D000133 ORTHO05D003668 1.8e-06 56.2 47 66.0
Medtr4g015570 Medicago truncatula HOM05D000133 ORTHO05D003668 1.8e-06 56.2 47 66.0
Psat7g245920 Pisum sativum HOM05D000133 ORTHO05D003668 1.8e-06 56.2 47 66.0
TPR.G13339 Trifolium pratense HOM05D000133 ORTHO05D003668 1.8e-06 56.2 47 66.0
Carub.0006s0030 Capsella rubella HOM05D000133 ORTHO05D003668 2.3e-06 55.8 47 63.8
CARHR083270 Cardamine hirsuta HOM05D000133 ORTHO05D003668 2.3e-06 55.8 47 63.8
Aa31LG5G18890 Aethionema arabicum HOM05D000133 ORTHO05D003668 3.0e-06 55.5 47 63.8
ClCG10G022080 Citrullus lanatus HOM05D000133 ORTHO05D003668 3.0e-06 55.5 47 66.0
Hund03012 Selenicereus undatus HOM05D000133 ORTHO05D003668 3.0e-06 55.5 47 66.0
THA.LOC104827056 Tarenaya hassleriana HOM05D000133 ORTHO05D003668 3.0e-06 55.5 47 66.0
Atru.chr8.2228 Acer truncatum HOM05D000133 ORTHO05D003668 3.9e-06 55.1 47 66.0
CANSAT56G2620 Cannabis sativa HOM05D000133 ORTHO05D003668 3.9e-06 55.1 47 63.8
COL.COLO4_14545 Corchorus olitorius HOM05D000133 ORTHO05D003668 3.9e-06 55.1 47 66.0
Manes.08G091700 Manihot esculenta HOM05D000133 ORTHO05D003668 3.9e-06 55.1 47 66.0
Os07g0558400 Oryza sativa ssp. japonica HOM05D000133 ORTHO05D003668 3.9e-06 55.1 47 66.0
Zm00001eb324090 Zea mays HOM05D000133 ORTHO05D003668 3.9e-06 55.1 47 66.0
Actinidia11596 Actinidia chinensis HOM05D000133 ORTHO05D003668 5.1e-06 54.7 47 63.8
Actinidia29107 Actinidia chinensis HOM05D000133 ORTHO05D003668 5.1e-06 54.7 47 63.8
CSS0006414 Camellia sinensis var. sinensis HOM05D000133 ORTHO05D003668 6.7e-06 54.3 47 63.8
CSS0014124 Camellia sinensis var. sinensis HOM05D000133 ORTHO05D003668 6.7e-06 54.3 47 63.8
Ciclev10012370m.g Citrus clementina HOM05D000133 ORTHO05D003668 6.7e-06 54.3 47 63.8
CsaV3_4G026100 Cucumis sativus L. HOM05D000133 ORTHO05D003668 6.7e-06 54.3 47 63.8
Dinv23128 Davidia involucrata HOM05D000133 ORTHO05D003668 6.7e-06 54.3 47 63.8
Dinv23130 Davidia involucrata HOM05D000133 ORTHO05D003668 6.7e-06 54.3 47 63.8
Hma1.2p1_0362F.1_g136150 Hydrangea macrophylla HOM05D000133 ORTHO05D003668 6.7e-06 54.3 47 63.8
Lj2A76T79 Lonicera japonica HOM05D000133 ORTHO05D003668 6.7e-06 54.3 47 63.8
Oeu030511.1 Olea europaea HOM05D000133 ORTHO05D003668 6.7e-06 54.3 47 63.8
Prupe.6G276200 Prunus persica HOM05D000133 ORTHO05D003668 6.7e-06 54.3 47 63.8
PGR004G0948 Punica granatum HOM05D000133 ORTHO05D003668 6.7e-06 54.3 47 63.8
QL07p035805 Quercus lobata HOM05D000133 ORTHO05D003668 6.7e-06 54.3 47 63.8
Sabra16G0111100 Salix brachista HOM05D000133 ORTHO05D003668 6.7e-06 54.3 47 63.8
TPR.G2535 Trifolium pratense HOM05D000133 ORTHO05D003668 6.7e-06 54.3 43 69.8
vmacro20256 Vaccinium macrocarpon HOM05D000133 ORTHO05D003668 6.7e-06 54.3 47 63.8
CAN.G154.14 Capsicum annuum HOM05D000133 ORTHO05D003668 8.7e-06 53.9 47 63.8
Cpa.g.sc163.22 Carica papaya HOM05D000133 ORTHO05D003668 8.7e-06 53.9 47 61.7
Glyma.01G115900 Glycine max HOM05D000133 ORTHO05D003668 8.7e-06 53.9 47 63.8
Glyma.03G060300 Glycine max HOM05D000133 ORTHO05D003668 8.7e-06 53.9 47 63.8
Nitab4.5_0000335g0220 Nicotiana tabacum HOM05D000133 ORTHO05D003668 8.7e-06 53.9 47 63.8
Nitab4.5_0011597g0020 Nicotiana tabacum HOM05D000133 ORTHO05D003668 8.7e-06 53.9 47 63.8
Oeu015026.1 Olea europaea HOM05D000133 ORTHO05D003668 8.7e-06 53.9 47 63.8
Peaxi162Scf00009g01816 Petunia axillaris HOM05D000133 ORTHO05D003668 8.7e-06 53.9 41 70.7
Sabra06G0076400 Salix brachista HOM05D000133 ORTHO05D003668 8.7e-06 53.9 47 63.8
Solyc09g014520.3 Solanum lycopersicum HOM05D000133 ORTHO05D003668 8.7e-06 53.9 47 63.8
Sopen09g007360 Solanum pennellii HOM05D000133 ORTHO05D003668 8.7e-06 53.9 47 63.8
PGSC0003DMG400008488 Solanum tuberosum HOM05D000133 ORTHO05D003668 8.7e-06 53.9 47 63.8
SGA_v2.0_scaffold85G26746 Striga asiatica HOM05D000054 ORTHO05D003668 8.7e-06 53.9 47 63.8
TWI77G0763 Tripterygium wilfordii HOM05D000133 ORTHO05D003668 8.7e-06 53.9 47 63.8
VMungo0331G1932 Vigna mungo HOM05D000133 ORTHO05D003668 8.7e-06 53.9 47 63.8
Zm00001eb106810 Zea mays HOM05D000133 ORTHO05D003668 8.7e-06 53.9 47 63.8


User provided reference genes

Program Settings