Gene: AT3G08940

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G08940
  • Transcript Identifier AT3G08940.2
  • Gene Type Coding gene
  • Location Chr3 : 2717717-2718665 : positive

Gene Family Information

  • ID HOM05D000133
  • #Genes/#Species 2666/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G08940.2
  • symbol LHCB4.2
  • uniprot Q9XF88

Descriptions

  • Description light harvesting complex photosystem II
  • Computational description light harvesting complex photosystem II (LHCB4.2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT5G01530.1); Has 1155 Blast hits to 1131 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1079; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
  • Computational description light harvesting complex photosystem II (LHCB4.2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT5G01530.1); Has 2312 Blast hits to 2241 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1976; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015979
IEA
GOA Databasephotosynthesis
GO:0018298
IEA
GOA Databaseprotein-chromophore linkage
GO:0009765
IEA
GOA Databasephotosynthesis, light harvesting
GO:0009765
IEA
InterProphotosynthesis, light harvesting
GO:0009416
IBA
Gene Ontologyresponse to light stimulus1
GO:0009768
IBA
Gene Ontologyphotosynthesis, light harvesting in photosystem I1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016168
IEA
GOA Databasechlorophyll binding
GO:0016168
ISS
Gene Ontologychlorophyll binding
GO:0003729
IDA
Gene OntologymRNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IEA
InterPromembrane
GO:0009579
IDA
IEA
GOA Databasethylakoid
GO:0009579
HDA
Gene Ontologythylakoid3
GO:0009534
IDA
GOA Databasechloroplast thylakoid
GO:0009534
HDA
Gene Ontologychloroplast thylakoid4
GO:0009523
IEA
GOA Databasephotosystem II
GO:0009522
IEA
GOA Databasephotosystem I
GO:0009536
IEA
GOA Databaseplastid
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast5
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
IBA
Gene Ontologychloroplast envelope1 6
GO:0009535
IDA
IEA
GOA Databasechloroplast thylakoid membrane
GO:0009535
HDA
IBA
Gene Ontologychloroplast thylakoid membrane1 7
GO:0005829
HDA
Gene Ontologycytosol8
GO:0010287
IBA
Gene Ontologyplastoglobule1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023329 Chlorophyll a/b binding domain superfamily
IPR022796 Chlorophyll A-B binding protein
IPR001344 Chlorophyll A-B binding protein, plant and chromista
Mapman id Description
1.1.1.1.2 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.component LHCb4