Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 1.9e-19 98.2 51 100.0
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 8.9e-17 89.4 51 94.1
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 3.1e-09 64.3 34 94.1
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 3.1e-09 64.3 34 94.1
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 3.1e-09 64.3 34 94.1
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 3.1e-09 64.3 34 94.1
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 3.1e-09 64.3 34 94.1
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 3.1e-09 64.3 34 94.1
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 3.1e-09 64.3 34 94.1
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 3.1e-09 64.3 34 94.1
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 3.1e-09 64.3 34 94.1
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 3.1e-09 64.3 34 94.1
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 3.1e-09 64.3 34 94.1
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 3.1e-09 64.3 34 94.1
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 4.0e-09 63.9 34 91.2
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 4.0e-09 63.9 34 91.2
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 4.0e-09 63.9 34 91.2
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 4.0e-09 63.9 34 91.2
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 4.0e-09 63.9 34 91.2
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 4.0e-09 63.9 34 91.2
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 4.0e-09 63.9 34 91.2
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 4.0e-09 63.9 34 91.2
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 4.0e-09 63.9 34 91.2
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 4.0e-09 63.9 34 91.2
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 4.0e-09 63.9 34 91.2
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 4.0e-09 63.9 34 91.2
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 4.0e-09 63.9 34 91.2
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 9.0e-09 62.8 34 91.2
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 9.0e-09 62.8 34 88.2
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 9.0e-09 62.8 34 91.2
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 9.0e-09 62.8 34 88.2
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 1.2e-08 62.4 34 91.2
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 1.2e-08 62.4 34 91.2
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 1.2e-08 62.4 34 88.2
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 1.5e-08 62.0 34 88.2
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 1.5e-08 62.0 34 88.2
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 1.5e-08 62.0 34 88.2
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 1.5e-08 62.0 34 88.2
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 1.5e-08 62.0 34 88.2
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 1.5e-08 62.0 34 88.2
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 2.6e-08 61.2 34 85.3
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 3.4e-08 60.8 34 85.3
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.4e-08 60.8 34 85.3
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.4e-08 60.8 34 85.3
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 3.4e-08 60.8 34 88.2
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 3.4e-08 60.8 34 85.3
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 3.4e-08 60.8 34 85.3
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 3.4e-08 60.8 34 88.2
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.4e-08 60.8 34 85.3
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 4.4e-08 60.5 34 85.3
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 4.4e-08 60.5 34 85.3
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 5.8e-08 60.1 34 85.3
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 5.8e-08 60.1 34 88.2
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 5.8e-08 60.1 34 85.3
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 5.8e-08 60.1 34 88.2
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 5.8e-08 60.1 34 88.2
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 5.8e-08 60.1 34 88.2
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 5.8e-08 60.1 34 88.2
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 5.8e-08 60.1 34 85.3
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 5.8e-08 60.1 34 85.3
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 5.8e-08 60.1 34 85.3
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 7.6e-08 59.7 34 85.3
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 7.6e-08 59.7 34 85.3
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 7.6e-08 59.7 33 87.9
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 7.6e-08 59.7 34 85.3
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 7.6e-08 59.7 34 85.3
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 7.6e-08 59.7 34 85.3
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 7.6e-08 59.7 34 85.3
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 7.6e-08 59.7 34 85.3
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 7.6e-08 59.7 34 85.3
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 7.6e-08 59.7 34 85.3
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 7.6e-08 59.7 34 85.3
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 9.9e-08 59.3 34 85.3
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 1.3e-07 58.9 34 85.3
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 1.3e-07 58.9 34 85.3
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.3e-07 58.9 34 85.3
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.3e-07 58.9 34 85.3
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.3e-07 58.9 34 85.3
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.3e-07 58.9 34 85.3
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.3e-07 58.9 34 85.3
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 1.3e-07 58.9 34 85.3
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 1.3e-07 58.9 34 85.3
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 1.3e-07 58.9 34 85.3
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 1.7e-07 58.5 34 85.3
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 1.7e-07 58.5 34 82.4
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 1.7e-07 58.5 34 85.3
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 1.7e-07 58.5 34 88.2
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 2.2e-07 58.2 34 82.4
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 2.2e-07 58.2 34 85.3
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 2.2e-07 58.2 34 82.4
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 2.2e-07 58.2 34 82.4
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 2.9e-07 57.8 34 82.4
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 6.4e-07 56.6 34 76.5
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 8.4e-07 56.2 34 82.4
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 2.4e-06 54.7 34 73.5
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 2.4e-06 54.7 34 73.5
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 2.4e-06 54.7 34 79.4
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 3.2e-06 54.3 34 73.5
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 3.2e-06 54.3 34 76.5
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 3.2e-06 54.3 34 76.5
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 9.3e-06 52.8 34 70.6


User provided reference genes

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