Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 1.2e-71 273.1 140 100.0
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 1.2e-71 273.1 140 100.0
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 1.6e-55 219.5 124 93.5
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 1.8e-30 136.3 88 78.4
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 1.8e-30 136.3 88 79.5
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 2.3e-30 136.0 88 78.4
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 2.5e-29 132.5 88 75.0
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 3.3e-29 132.1 88 75.0
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 5.6e-29 131.3 86 76.7
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 5.6e-29 131.3 86 76.7
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 5.6e-29 131.3 86 76.7
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.6e-28 129.8 88 75.0
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 1.6e-28 129.8 88 72.7
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 1.6e-28 129.8 88 72.7
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 3.6e-28 128.6 88 72.7
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 4.5e-26 121.7 98 64.3
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 5.8e-26 121.3 88 71.6
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 5.8e-26 121.3 88 70.5
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 2.9e-25 119.0 88 68.2
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 4.9e-25 118.2 88 70.5
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 6.4e-25 117.9 98 62.2
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 8.4e-25 117.5 88 65.9
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 1.1e-24 117.1 91 68.1
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 2.4e-24 115.9 94 63.8
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.4e-24 115.9 88 69.3
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 2.4e-24 115.9 91 64.8
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 2.4e-24 115.9 88 67.0
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 7.1e-24 114.4 86 67.4
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 9.3e-24 114.0 91 64.8
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 1.2e-23 113.6 88 65.9
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.2e-23 113.6 88 64.8
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 1.6e-23 113.2 94 61.7
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.6e-23 113.2 91 62.6
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 2.1e-23 112.8 88 67.0
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 2.1e-23 112.8 88 67.0
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 2.1e-23 112.8 88 64.8
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 2.1e-23 112.8 102 58.8
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 2.7e-23 112.5 88 65.9
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 2.7e-23 112.5 109 57.8
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 2.7e-23 112.5 84 67.9
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 3.5e-23 112.1 91 62.6
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 3.5e-23 112.1 91 61.5
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 3.5e-23 112.1 92 65.2
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 3.5e-23 112.1 88 64.8
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 3.5e-23 112.1 85 67.1
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 3.5e-23 112.1 85 67.1
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 3.5e-23 112.1 85 67.1
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 4.6e-23 111.7 91 61.5
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 4.6e-23 111.7 91 63.7
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 7.9e-23 110.9 91 63.7
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 7.9e-23 110.9 109 55.0
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 7.9e-23 110.9 91 62.6
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 7.9e-23 110.9 86 66.3
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 1.0e-22 110.5 91 61.5
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 1.0e-22 110.5 88 64.8
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 1.0e-22 110.5 86 64.0
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 1.3e-22 110.2 86 62.8
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 1.3e-22 110.2 88 63.6
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 1.3e-22 110.2 98 59.2
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 1.3e-22 110.2 86 65.1
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 1.3e-22 110.2 88 62.5
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 1.3e-22 110.2 107 56.1
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 1.8e-22 109.8 91 61.5
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 2.3e-22 109.4 91 62.6
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 2.3e-22 109.4 87 69.0
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 3.0e-22 109.0 99 60.6
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 3.0e-22 109.0 86 66.3
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 3.0e-22 109.0 86 65.1
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 3.9e-22 108.6 91 61.5
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 3.9e-22 108.6 88 64.8
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 3.9e-22 108.6 88 64.8
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 5.1e-22 108.2 86 65.1
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 5.1e-22 108.2 91 62.6
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 5.1e-22 108.2 86 65.1
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 6.7e-22 107.8 89 62.9
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 6.7e-22 107.8 89 62.9
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 6.7e-22 107.8 88 62.5
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 6.7e-22 107.8 88 62.5
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 6.7e-22 107.8 88 62.5
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 6.7e-22 107.8 88 62.5
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 6.7e-22 107.8 88 63.6
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 8.7e-22 107.5 91 60.4
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 8.7e-22 107.5 88 62.5
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 8.7e-22 107.5 84 65.5
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 8.7e-22 107.5 89 61.8
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.1e-21 107.1 84 65.5
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 1.9e-21 106.3 94 56.4
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.9e-21 106.3 86 64.0
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.9e-21 106.3 86 64.0
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 1.9e-21 106.3 88 62.5
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 1.9e-21 106.3 88 59.1
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 2.5e-21 105.9 107 54.2
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 2.5e-21 105.9 91 57.1
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 2.5e-21 105.9 86 64.0
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 3.3e-21 105.5 86 62.8
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 3.3e-21 105.5 91 59.3
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 3.3e-21 105.5 88 63.6
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 4.3e-21 105.1 84 64.3
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 4.3e-21 105.1 92 63.0
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 4.3e-21 105.1 88 62.5
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 5.6e-21 104.8 94 57.4
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 7.4e-21 104.4 88 60.2
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 7.4e-21 104.4 87 59.8
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 7.4e-21 104.4 87 59.8
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 9.6e-21 104.0 85 63.5
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 9.6e-21 104.0 87 59.8
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 9.6e-21 104.0 88 63.6
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 1.3e-20 103.6 86 64.0
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.3e-20 103.6 88 60.2
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 2.1e-20 102.8 86 60.5
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 2.8e-20 102.4 86 61.6
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 3.7e-20 102.1 86 62.8
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 3.7e-20 102.1 86 62.8
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 6.2e-20 101.3 98 55.1
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 1.1e-19 100.5 87 60.9
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 4.0e-19 98.6 90 58.9
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 9.0e-19 97.4 107 53.3
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 1.2e-18 97.1 80 61.2
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 1.5e-18 96.7 96 55.2
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 3.4e-18 95.5 139 43.9
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 6.5e-17 91.3 90 54.4
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 1.1e-16 90.5 86 50.0
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 1.1e-16 90.5 96 53.1
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 1.6e-15 86.7 129 41.9
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 2.1e-15 86.3 152 38.2
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 2.1e-15 86.3 88 47.7
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 2.1e-15 86.3 96 51.0
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 1.0e-14 84.0 144 38.9
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 1.3e-14 83.6 83 49.4
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 3.9e-14 82.0 154 37.7
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 1.9e-13 79.7 88 47.7
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 8.2e-12 74.3 73 58.9
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 1.0e-09 67.4 65 56.9
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 1.0e-09 67.4 84 44.0
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.8e-09 65.5 53 60.4
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 1.1e-08 63.9 182 30.8
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.0e-06 57.4 31 83.9
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 1.3e-06 57.0 50 60.0
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.8e-06 56.6 50 56.0
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 1.8e-06 56.6 58 48.3
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 3.9e-06 55.5 39 69.2
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 5.1e-06 55.1 99 35.4
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 8.7e-06 54.3 50 56.0


User provided reference genes

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