Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 5.5e-98 360.9 176 100.0
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 3.5e-84 315.1 191 84.8
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 5.7e-71 271.2 191 75.9
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 5.4e-69 264.6 190 73.2
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 8.6e-67 257.3 216 67.1
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 4.7e-65 251.5 180 74.4
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 4.7e-65 251.5 180 74.4
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 4.7e-65 251.5 180 74.4
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 6.1e-65 251.1 213 66.2
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 5.2e-64 248.1 166 77.1
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 8.8e-64 247.3 166 75.9
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.1e-61 240.4 213 62.9
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 2.7e-60 235.7 215 61.4
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 4.5e-60 235.0 215 61.4
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 4.7e-57 224.9 120 95.0
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 7.5e-55 217.6 132 84.1
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.7e-54 216.5 213 55.4
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 8.3e-54 214.2 159 71.1
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 4.1e-53 211.8 214 55.6
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 7.0e-53 211.1 126 83.3
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 4.3e-50 201.8 211 53.1
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.1e-49 199.5 139 71.9
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 8.9e-48 194.1 211 51.2
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.9e-45 186.4 169 59.2
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 2.0e-44 183.0 207 49.8
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 3.5e-44 182.2 138 65.9
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 3.5e-44 182.2 138 65.9
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.7e-43 179.9 138 65.2
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.7e-43 179.9 138 65.2
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.7e-43 179.9 138 65.2
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 1.5e-42 176.8 138 64.5
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 2.5e-42 176.0 126 69.8
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.2e-41 173.7 138 64.5
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 2.8e-41 172.6 155 57.4
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 6.2e-41 171.4 157 58.6
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 2.3e-40 169.5 162 54.3
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 3.1e-40 169.1 140 61.4
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 6.8e-40 167.9 155 56.1
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.5e-39 166.8 186 47.3
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 2.0e-39 166.4 138 60.1
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 2.0e-39 166.4 157 57.3
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 3.4e-39 165.6 138 63.0
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 5.8e-39 164.9 120 67.5
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.3e-38 163.7 157 54.8
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.3e-38 163.7 212 42.9
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 1.3e-38 163.7 155 54.8
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.7e-38 163.3 159 55.3
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 2.2e-38 162.9 159 55.3
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 2.2e-38 162.9 139 60.4
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.9e-38 162.5 155 53.5
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.7e-38 162.2 136 61.8
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 4.9e-38 161.8 121 66.1
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 4.9e-38 161.8 159 55.3
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 4.9e-38 161.8 180 47.2
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 4.9e-38 161.8 159 52.2
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 6.4e-38 161.4 157 52.2
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 6.4e-38 161.4 155 52.9
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 8.3e-38 161.0 126 63.5
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.9e-37 159.8 138 60.1
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 2.4e-37 159.5 152 52.0
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 2.4e-37 159.5 125 62.4
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.4e-37 159.5 154 57.1
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.4e-37 159.5 175 47.4
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 5.4e-37 158.3 160 55.0
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 7.1e-37 157.9 170 50.0
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 9.2e-37 157.5 171 51.5
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 9.2e-37 157.5 124 63.7
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 9.2e-37 157.5 161 52.8
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.2e-36 157.1 138 57.2
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.2e-36 157.1 138 57.2
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 1.6e-36 156.8 162 53.7
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.6e-36 156.8 164 52.4
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 1.6e-36 156.8 153 52.3
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.1e-36 156.4 123 61.8
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 2.1e-36 156.4 162 51.9
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 2.7e-36 156.0 152 50.7
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 2.7e-36 156.0 135 60.0
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 3.5e-36 155.6 152 50.0
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.5e-36 155.6 125 61.6
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 6.0e-36 154.8 152 50.0
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 7.8e-36 154.5 157 51.6
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 7.8e-36 154.5 157 51.6
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 2.3e-35 152.9 123 61.0
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.0e-35 152.5 137 54.7
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 3.0e-35 152.5 123 60.2
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 3.0e-35 152.5 139 57.6
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 3.0e-35 152.5 138 57.2
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 3.9e-35 152.1 168 48.2
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 5.1e-35 151.8 138 55.1
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 5.1e-35 151.8 132 57.6
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.5e-34 150.2 148 50.0
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.9e-34 149.8 122 59.0
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 5.6e-34 148.3 174 48.9
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 7.3e-34 147.9 174 48.9
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 9.5e-34 147.5 134 56.7
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 9.5e-34 147.5 124 56.5
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 9.5e-34 147.5 148 54.1
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 2.8e-33 146.0 142 52.8
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.8e-33 146.0 126 59.5
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 8.1e-33 144.4 128 58.6
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 1.1e-32 144.1 148 52.0
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.4e-32 143.7 123 59.3
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 2.4e-32 142.9 127 55.9
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 5.2e-32 141.7 149 48.3
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.2e-31 140.6 124 59.7
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 2.0e-31 139.8 124 58.9
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.0e-31 139.8 124 58.9
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.0e-31 139.8 124 58.9
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.6e-31 139.4 124 54.0
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.4e-31 138.7 124 58.9
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 4.4e-31 138.7 123 58.5
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 5.8e-31 138.3 127 55.9
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 7.6e-31 137.9 167 47.9
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 9.9e-31 137.5 126 56.3
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 9.9e-31 137.5 124 53.2
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.3e-30 137.1 127 55.1
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 3.8e-30 135.6 109 63.3
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 4.9e-30 135.2 134 50.7
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.4e-29 132.9 137 48.9
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.4e-29 132.9 168 43.5
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 7.1e-29 131.3 126 51.6
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 7.1e-29 131.3 130 52.3
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 7.1e-29 131.3 119 53.8
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 7.1e-29 131.3 169 45.0
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 2.7e-28 129.4 111 59.5
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 4.6e-28 128.6 120 53.3
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 6.0e-28 128.3 169 42.6
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 6.0e-28 128.3 167 43.7
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.7e-27 126.7 127 50.4
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 2.3e-27 126.3 145 45.5
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 3.9e-27 125.6 135 51.1
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 3.9e-27 125.6 135 51.9
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 6.6e-27 124.8 116 54.3
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 6.6e-27 124.8 111 57.7
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 6.6e-27 124.8 111 57.7
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 8.7e-27 124.4 113 57.5
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.5e-26 122.9 171 41.5
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 3.3e-26 122.5 114 51.8
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 5.6e-26 121.7 117 53.0
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 5.6e-26 121.7 140 50.0
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 7.3e-26 121.3 98 62.2
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 7.3e-26 121.3 158 43.7
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 9.6e-26 120.9 126 51.6
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 6.2e-25 118.2 95 62.1
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 2.4e-24 116.3 132 50.0
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 2.4e-24 116.3 115 50.4
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 9.0e-24 114.4 141 44.0
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.2e-23 114.0 120 47.5
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.1e-18 97.4 98 48.0
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 3.6e-17 92.4 71 59.2
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 2.5e-10 69.7 107 37.4
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 2.5e-10 69.7 117 40.2
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.6e-09 67.0 57 59.6
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.1e-08 62.8 125 38.4
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 6.9e-08 61.6 113 35.4
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 2.0e-07 60.1 42 66.7
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 9.9e-07 57.8 41 61.0
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 3.8e-06 55.8 40 62.5


User provided reference genes

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